ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22n08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009272.1| Triticum aestivum clone wlk8.pk0011.e10:fis, full insert mRNA sequence Length = 1878 Score = 987 bits (498), Expect = 0.0 Identities = 556/574 (96%), Gaps = 1/574 (0%) Strand = Plus / Minus Query: 62 tatagcatatcagcgaaacatcttacagtatgtgcctgcaataagaaactattgacaaag 121 ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1793 tatagcatatcagcgaagcatcttacagtatgtgcctgcaataagaaactatcgacaaag 1734 Query: 122 ttcccatattctgtaaaatgcttggattccttttacataagatggcgcttcatcatggat 181 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct: 1733 ttcccatattctgtaaaatgcttggattccttttacatatggtggcgcttcatcatggat 1674 Query: 182 ctattgtttacatggacttgtcctcagttgtgcttcctgtttgcttcctt-gctgttgaa 240 ||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| Sbjct: 1673 ctattgtttacatggacttgtcctcagctgtgcttcttgtttgcttcctttgctgttgaa 1614 Query: 241 acacagcagtgcttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 300 |||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 1613 acacagcagttcttagttcttgtacttcatggtctccttctcgaatccaattgttgggaa 1554 Query: 301 ttgttttgcatattcctccacatcgtggcgaagctttgcaatttcagcttggatgttgct 360 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1553 ttgtttcgcatattcctccacatcgtggcgaagctttgcaatttcagcttggatgttgct 1494 Query: 361 gtcggattgcaaagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaac 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1493 gtcggattgcaaagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaac 1434 Query: 421 cttcaaagccaagttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctc 480 |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1433 cttcaaggccaagttcactgccgaatcgaagaagtcagcaaccttggcgaagtcctcctc 1374 Query: 481 aacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagc 540 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1373 aacaaatcctcttgatgtaagtgcgggggttcccatcctgatgcctccgggtaccatagc 1314 Query: 541 tgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaaacctt 600 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1313 tgaaacatcaccaggaaccgtgttcttgtttgctgcaatatgcacattttctaaaacctt 1254 Query: 601 ctccactcttgaaccatctattccctttttcttg 634 |||||| | ||||||||||||||||||||||||| Sbjct: 1253 ctccacacgtgaaccatctattccctttttcttg 1220
>ref|XM_469653.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2052 Score = 476 bits (240), Expect = e-131 Identities = 342/376 (90%) Strand = Plus / Minus Query: 252 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 311 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 1675 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1616 Query: 312 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 371 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 1615 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1556 Query: 372 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 431 ||||||||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 1555 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1496 Query: 432 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 491 |||||||||| | ||||||||| || |||||||| || |||||||||||||||||||||| Sbjct: 1495 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1436 Query: 492 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 551 |||| || || || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1435 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1376 Query: 552 caggaacagtgttcttgtttgctgcaatatgcacattttctaaaaccttctccactcttg 611 ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 1375 caggaactgtgttcttgtttgctgcaatgtgcacgttttctaaaaccttctccactcttg 1316 Query: 612 aaccatctattccctt 627 |||||||||| ||||| Sbjct: 1315 aaccatctatgccctt 1300 Score = 54.0 bits (27), Expect = 6e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 78 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 137 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 1876 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1818 Query: 138 aatg-cttggattccttttacataagatggc 167 |||| | || | |||||||||||||||||| Sbjct: 1817 aatgccaggggtcccttttacataagatggc 1787
>dbj|AK061913.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A08, full insert sequence Length = 1402 Score = 476 bits (240), Expect = e-131 Identities = 342/376 (90%) Strand = Plus / Minus Query: 252 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 311 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 1128 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1069 Query: 312 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 371 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 1068 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1009 Query: 372 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 431 ||||||||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 1008 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 949 Query: 432 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 491 |||||||||| | ||||||||| || |||||||| || |||||||||||||||||||||| Sbjct: 948 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 889 Query: 492 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 551 |||| || || || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 888 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 829 Query: 552 caggaacagtgttcttgtttgctgcaatatgcacattttctaaaaccttctccactcttg 611 ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 828 caggaactgtgttcttgtttgctgcaatgtgcacgttttctaaaaccttctccactcttg 769 Query: 612 aaccatctattccctt 627 |||||||||| ||||| Sbjct: 768 aaccatctatgccctt 753 Score = 54.0 bits (27), Expect = 6e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 78 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 137 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 1329 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1271 Query: 138 aatgcttggattcc-ttttacataagatggc 167 ||||| || ||| |||||||||||||||| Sbjct: 1270 aatgccaggggtcccttttacataagatggc 1240
>dbj|AK119226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H12, full insert sequence Length = 1923 Score = 476 bits (240), Expect = e-131 Identities = 342/376 (90%) Strand = Plus / Minus Query: 252 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 311 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 1598 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1539 Query: 312 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 371 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 1538 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1479 Query: 372 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 431 ||||||||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 1478 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1419 Query: 432 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 491 |||||||||| | ||||||||| || |||||||| || |||||||||||||||||||||| Sbjct: 1418 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1359 Query: 492 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 551 |||| || || || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1358 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1299 Query: 552 caggaacagtgttcttgtttgctgcaatatgcacattttctaaaaccttctccactcttg 611 ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 1298 caggaactgtgttcttgtttgctgcaatgtgcacgttttctaaaaccttctccactcttg 1239 Query: 612 aaccatctattccctt 627 |||||||||| ||||| Sbjct: 1238 aaccatctatgccctt 1223 Score = 54.0 bits (27), Expect = 6e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 78 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 137 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 1799 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1741 Query: 138 aatg-cttggattccttttacataagatggc 167 |||| | || | |||||||||||||||||| Sbjct: 1740 aatgccaggggtcccttttacataagatggc 1710
>dbj|AK100404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086P20, full insert sequence Length = 1976 Score = 476 bits (240), Expect = e-131 Identities = 342/376 (90%) Strand = Plus / Minus Query: 252 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 311 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 1599 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1540 Query: 312 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 371 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 1539 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1480 Query: 372 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 431 ||||||||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 1479 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1420 Query: 432 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 491 |||||||||| | ||||||||| || |||||||| || |||||||||||||||||||||| Sbjct: 1419 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1360 Query: 492 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 551 |||| || || || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1359 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1300 Query: 552 caggaacagtgttcttgtttgctgcaatatgcacattttctaaaaccttctccactcttg 611 ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 1299 caggaactgtgttcttgtttgctgcaatgtgcacgttttctaaaaccttctccactcttg 1240 Query: 612 aaccatctattccctt 627 |||||||||| ||||| Sbjct: 1239 aaccatctatgccctt 1224 Score = 54.0 bits (27), Expect = 6e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 78 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 137 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 1800 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1742 Query: 138 aatg-cttggattccttttacataagatggc 167 |||| | || | |||||||||||||||||| Sbjct: 1741 aatgccaggggtcccttttacataagatggc 1711
>dbj|AK060674.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A01, full insert sequence Length = 1844 Score = 476 bits (240), Expect = e-131 Identities = 342/376 (90%) Strand = Plus / Minus Query: 252 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 311 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 1591 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1532 Query: 312 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 371 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 1531 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1472 Query: 372 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 431 ||||||||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 1471 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1412 Query: 432 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 491 |||||||||| | ||||||||| || |||||||| || |||||||||||||||||||||| Sbjct: 1411 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1352 Query: 492 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 551 |||| || || || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1351 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1292 Query: 552 caggaacagtgttcttgtttgctgcaatatgcacattttctaaaaccttctccactcttg 611 ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 1291 caggaactgtgttcttgtttgctgcaatgtgcacgttttctaaaaccttctccactcttg 1232 Query: 612 aaccatctattccctt 627 |||||||||| ||||| Sbjct: 1231 aaccatctatgccctt 1216 Score = 54.0 bits (27), Expect = 6e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 78 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 137 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 1792 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1734 Query: 138 aatg-cttggattccttttacataagatggc 167 |||| | || | |||||||||||||||||| Sbjct: 1733 aatgccaggggtcccttttacataagatggc 1703
>gb|AY105738.1| Zea mays PCO070960 mRNA sequence Length = 1476 Score = 391 bits (197), Expect = e-105 Identities = 339/385 (88%), Gaps = 6/385 (1%) Strand = Plus / Minus Query: 253 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcata 312 |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| | Sbjct: 1231 ttagttcttgtatttcatggtctctttctcaaatccaattgttgggaattgttttgcaaa 1172 Query: 313 ttcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgcaa 372 |||||| ||||| ||||||||||||||||| ||| |||||||| || || |||||||| Sbjct: 1171 ttcctctacatcatggcgaagctttgcaatctcaacttggatg---ctatcagattgcaa 1115 Query: 373 agtggcaacaaagtccttcagtttggt---acctgctgctgcagctttaaccttcaaagc 429 ||||||||||||||||||||| || || ||||| | |||||| |||| |||||| || Sbjct: 1114 agtggcaacaaagtccttcagctttgttccacctgtcgttgcagccttaatcttcaaggc 1055 Query: 430 caagttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcc 489 || |||||||| | ||||||||| || ||||| || ||||| || || ||||||||||| Sbjct: 1054 cagattcactgctgcatcgaagaagtcagcaactttagcgaaatcttcttcaacaaatcc 995 Query: 490 tcttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatc 549 ||| || ||||| || ||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 994 tctcgacgtaagggctggggttcccatcctgatgcctcctggcaccatagctgaaacatc 935 Query: 550 accaggaacagtgttcttgtttgctgcaatatgcacattttctaaaaccttctccactct 609 ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct: 934 accaggaactgtgttcttgtttgctgcaatatgcacactttctaaaaccttctccaccct 875 Query: 610 tgaaccatctattccctttttcttg 634 |||||||||||| ||||| |||||| Sbjct: 874 tgaaccatctatccccttattcttg 850
>gb|AF439728.1|AF439728 Zea mays serine hydroxymethyltransferase mRNA, partial cds Length = 1028 Score = 200 bits (101), Expect = 4e-48 Identities = 122/129 (94%) Strand = Plus / Minus Query: 506 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 565 ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| Sbjct: 1025 ggggttcccatcctgatgcctcctggcaccatagctgaaacatcaccaggaactgtgttc 966 Query: 566 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 625 ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||| Sbjct: 965 ttgtttgctgcaatatgcacactttctaaaaccttctccacccttgaaccatctatcccc 906 Query: 626 tttttcttg 634 || |||||| Sbjct: 905 ttattcttg 897
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 188 bits (95), Expect = 2e-44 Identities = 110/115 (95%) Strand = Plus / Minus Query: 512 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 571 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 30010834 cccatcctgatgcctcctggtaccatagctgaaacatcaccaggaactgtgttcttgttt 30010775 Query: 572 gctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccct 626 |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 30010774 gctgcaatgtgcacgttttctaaaaccttctccactcttgaaccatctatgccct 30010720 Score = 176 bits (89), Expect = 6e-41 Identities = 131/145 (90%) Strand = Plus / Minus Query: 252 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 311 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 30011320 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 30011261 Query: 312 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 371 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 30011260 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 30011201 Query: 372 aagtggcaacaaagtccttcagttt 396 ||||||||||||||||||||||||| Sbjct: 30011200 aagtggcaacaaagtccttcagttt 30011176 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Minus Query: 405 ctgctgcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaacct 464 |||||||||| |||||||||||||||||||||||||| | ||||||||| || ||||||| Sbjct: 30011026 ctgctgcagccttaaccttcaaagccaagttcactgctgcatcgaagaaatcagcaacct 30010967 Query: 465 tggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcc 513 | || |||||||||||||||||||||||||| || || || |||||||| Sbjct: 30010966 tagcaaagtcctcctcaacaaatcctcttgaggtcagtgctggggttcc 30010918 Score = 54.0 bits (27), Expect = 6e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 78 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 137 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 30011757 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 30011699 Query: 138 aatgcttggattcc-ttttacataagatggc 167 ||||| || ||| |||||||||||||||| Sbjct: 30011698 aatgccaggggtcccttttacataagatggc 30011668
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 188 bits (95), Expect = 2e-44 Identities = 110/115 (95%) Strand = Plus / Plus Query: 512 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 571 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 96917 cccatcctgatgcctcctggtaccatagctgaaacatcaccaggaactgtgttcttgttt 96976 Query: 572 gctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccct 626 |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 96977 gctgcaatgtgcacgttttctaaaaccttctccactcttgaaccatctatgccct 97031 Score = 176 bits (89), Expect = 6e-41 Identities = 131/145 (90%) Strand = Plus / Plus Query: 252 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 311 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 96431 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 96490 Query: 312 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 371 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 96491 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 96550 Query: 372 aagtggcaacaaagtccttcagttt 396 ||||||||||||||||||||||||| Sbjct: 96551 aagtggcaacaaagtccttcagttt 96575 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Plus Query: 405 ctgctgcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaacct 464 |||||||||| |||||||||||||||||||||||||| | ||||||||| || ||||||| Sbjct: 96725 ctgctgcagccttaaccttcaaagccaagttcactgctgcatcgaagaaatcagcaacct 96784 Query: 465 tggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcc 513 | || |||||||||||||||||||||||||| || || || |||||||| Sbjct: 96785 tagcaaagtcctcctcaacaaatcctcttgaggtcagtgctggggttcc 96833 Score = 54.0 bits (27), Expect = 6e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Plus Query: 78 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 137 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 95994 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 96052 Query: 138 aatg-cttggattccttttacataagatggc 167 |||| | || | |||||||||||||||||| Sbjct: 96053 aatgccaggggtcccttttacataagatggc 96083
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 188 bits (95), Expect = 2e-44 Identities = 110/115 (95%) Strand = Plus / Minus Query: 512 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 571 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 30102256 cccatcctgatgcctcctggtaccatagctgaaacatcaccaggaactgtgttcttgttt 30102197 Query: 572 gctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccct 626 |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 30102196 gctgcaatgtgcacgttttctaaaaccttctccactcttgaaccatctatgccct 30102142 Score = 176 bits (89), Expect = 6e-41 Identities = 131/145 (90%) Strand = Plus / Minus Query: 252 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 311 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 30102742 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 30102683 Query: 312 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 371 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 30102682 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 30102623 Query: 372 aagtggcaacaaagtccttcagttt 396 ||||||||||||||||||||||||| Sbjct: 30102622 aagtggcaacaaagtccttcagttt 30102598 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Minus Query: 405 ctgctgcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaacct 464 |||||||||| |||||||||||||||||||||||||| | ||||||||| || ||||||| Sbjct: 30102448 ctgctgcagccttaaccttcaaagccaagttcactgctgcatcgaagaaatcagcaacct 30102389 Query: 465 tggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcc 513 | || |||||||||||||||||||||||||| || || || |||||||| Sbjct: 30102388 tagcaaagtcctcctcaacaaatcctcttgaggtcagtgctggggttcc 30102340 Score = 54.0 bits (27), Expect = 6e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 78 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 137 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 30103179 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 30103121 Query: 138 aatg-cttggattccttttacataagatggc 167 |||| | || | |||||||||||||||||| Sbjct: 30103120 aatgccaggggtcccttttacataagatggc 30103090
>ref|NM_180750.1| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780 transcript variant AT5G26780.2 mRNA, complete cds Length = 1966 Score = 135 bits (68), Expect = 2e-28 Identities = 131/152 (86%) Strand = Plus / Minus Query: 476 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 535 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1483 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1424 Query: 536 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 595 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 1423 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 1364 Query: 596 accttctccactcttgaaccatctattccctt 627 || || ||||||||||| |||||||||||||| Sbjct: 1363 actttttccactcttgatccatctattccctt 1332 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 267 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 315 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1692 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1644
>ref|NM_122560.2| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780 transcript variant AT5G26780.3 mRNA, complete cds Length = 2072 Score = 135 bits (68), Expect = 2e-28 Identities = 131/152 (86%) Strand = Plus / Minus Query: 476 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 535 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1483 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1424 Query: 536 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 595 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 1423 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 1364 Query: 596 accttctccactcttgaaccatctattccctt 627 || || ||||||||||| |||||||||||||| Sbjct: 1363 actttttccactcttgatccatctattccctt 1332 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 267 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 315 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1692 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1644
>ref|NM_180749.2| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780 transcript variant AT5G26780.1 mRNA, complete cds Length = 1962 Score = 135 bits (68), Expect = 2e-28 Identities = 131/152 (86%) Strand = Plus / Minus Query: 476 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 535 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1435 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1376 Query: 536 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 595 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 1375 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 1316 Query: 596 accttctccactcttgaaccatctattccctt 627 || || ||||||||||| |||||||||||||| Sbjct: 1315 actttttccactcttgatccatctattccctt 1284 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 267 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 315 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1644 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1596
>gb|BT001097.1| Arabidopsis thaliana clone C104687 (D) putative glycine hydroxymethyltransferase (At5g26780) mRNA, complete cds Length = 1633 Score = 135 bits (68), Expect = 2e-28 Identities = 131/152 (86%) Strand = Plus / Minus Query: 476 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 535 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1379 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1320 Query: 536 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 595 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 1319 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 1260 Query: 596 accttctccactcttgaaccatctattccctt 627 || || ||||||||||| |||||||||||||| Sbjct: 1259 actttttccactcttgatccatctattccctt 1228 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 267 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 315 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1588 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1540
>dbj|AK220785.1| Arabidopsis thaliana mRNA for glycine hydroxymethyltransferase -like protein, complete cds, clone: RAFL22-26-M08 Length = 909 Score = 135 bits (68), Expect = 2e-28 Identities = 131/152 (86%) Strand = Plus / Minus Query: 476 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 535 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 343 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 284 Query: 536 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 595 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 283 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 224 Query: 596 accttctccactcttgaaccatctattccctt 627 || || ||||||||||| |||||||||||||| Sbjct: 223 actttttccactcttgatccatctattccctt 192 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 267 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 315 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 552 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 504
>emb|BX830710.1|CNS09YQU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZG06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1960 Score = 135 bits (68), Expect = 2e-28 Identities = 131/152 (86%) Strand = Plus / Minus Query: 476 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 535 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1429 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1370 Query: 536 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 595 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 1369 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 1310 Query: 596 accttctccactcttgaaccatctattccctt 627 || || ||||||||||| |||||||||||||| Sbjct: 1309 actttttccactcttgatccatctattccctt 1278 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 267 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 315 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1639 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1591
>gb|BT001113.1| Arabidopsis thaliana clone C104687 (D) putative glycine hydroxymethyltransferase (At5g26780) mRNA, complete cds Length = 1633 Score = 135 bits (68), Expect = 2e-28 Identities = 131/152 (86%) Strand = Plus / Minus Query: 476 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 535 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1379 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1320 Query: 536 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 595 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 1319 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 1260 Query: 596 accttctccactcttgaaccatctattccctt 627 || || ||||||||||| |||||||||||||| Sbjct: 1259 actttttccactcttgatccatctattccctt 1228 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 267 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 315 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1588 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1540
>gb|AY035117.1| Arabidopsis thaliana putative glycine hydroxymethyltransferase (At5g26780) mRNA, complete cds Length = 1933 Score = 127 bits (64), Expect = 5e-26 Identities = 130/152 (85%) Strand = Plus / Minus Query: 476 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 535 ||||||| |||||||||||||| || || || |||||||| |||||| ||||| ||| Sbjct: 1434 tcctcaatgaatcctcttgatgtgagggctggtgttcccatatggatgccaccgggaacc 1375 Query: 536 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 595 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 1374 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 1315 Query: 596 accttctccactcttgaaccatctattccctt 627 || || ||||||||||| |||||||||||||| Sbjct: 1314 actttttccactcttgatccatctattccctt 1283 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 267 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 315 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1643 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1595
>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence Length = 110946 Score = 109 bits (55), Expect = 1e-20 Identities = 94/107 (87%) Strand = Plus / Minus Query: 520 gatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgtttgctgcaat 579 |||||| ||||| ||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct: 22521 gatgccaccgggaaccatggcagaaacatcaccaggaacagtattcttgtttgctgcaat 22462 Query: 580 atgcacattttctaaaaccttctccactcttgaaccatctattccct 626 ||| || |||||| || || ||||||||||| ||||||||||||| Sbjct: 22461 atgtactaattctaatactttttccactcttgatccatctattccct 22415 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 267 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 315 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 23145 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 23097
>emb|Z25860.1|FPGHMT2 Flaveria pringlei mRNA for glycine hydroxymethyltransferase Length = 1779 Score = 101 bits (51), Expect = 3e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 255 agttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatatt 314 |||| ||||| |||||||| |||||||| || |||||||||||||||||||| ||||| | Sbjct: 1576 agtttttgtatttcatggtttctttctcaaacccgattgttgggaattgtttggcatact 1517 Query: 315 cctccacatcgtggcgaagctttgcaatttc 345 ||||||| |||||||| ||||||| |||||| Sbjct: 1516 cctccacgtcgtggcgtagctttgaaatttc 1486 Score = 97.6 bits (49), Expect = 4e-17 Identities = 133/161 (82%) Strand = Plus / Minus Query: 473 tcctcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggt 532 ||||| ||||||||||| || || || || || ||||||||||| |||||||| || || Sbjct: 1361 tcctcttcaacaaatcccctagaagtgagagcaggggttcccattctgatgccaccagga 1302 Query: 533 accatagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttct 592 ||||| || || |||||||||||||||||||| || || |||||||| || ||| ||| Sbjct: 1301 accatggcagacacatcaccaggaacagtgtttttattggctgcaatgtgaacagcttcc 1242 Query: 593 aaaaccttctccactcttgaaccatctattccctttttctt 633 || ||||| || || ||||||||||| |||||||| ||||| Sbjct: 1241 aacaccttttcaacccttgaaccatcaattcccttattctt 1201
>emb|Z25859.1|FPGHMT1 Flaveria pringlei mRNA for glycine hydroxymethyltransferase Length = 1746 Score = 95.6 bits (48), Expect = 2e-16 Identities = 90/104 (86%) Strand = Plus / Minus Query: 252 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 311 ||||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||| || | Sbjct: 1588 cttagtttttgtatttcatggtttctttctcaaatccgattgtcgggaattgtttcgcgt 1529 Query: 312 attcctccacatcgtggcgaagctttgcaatttcagcttggatg 355 |||||||||| || ||||| ||||||| ||||| | ||||||| Sbjct: 1528 attcctccacgtcatggcgtagctttgagatttctgattggatg 1485 Score = 85.7 bits (43), Expect = 2e-13 Identities = 103/123 (83%) Strand = Plus / Minus Query: 457 ggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcccat 516 |||||| || || |||||||| ||||||||||| || || || || || ||||||||||| Sbjct: 1386 ggcaactttagcaaagtcctcttcaacaaatcccctagaggtgagagcaggggttcccat 1327 Query: 517 cctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgtttgctgc 576 |||||||| || || ||||| || || |||||||||||||||||||| || || ||||| Sbjct: 1326 tctgatgccaccaggaaccatggcagagacatcaccaggaacagtgtttttattggctgc 1267 Query: 577 aat 579 ||| Sbjct: 1266 aat 1264
>gb|M87649.1|PEASHMTA Pisum sativum serine hydroxymethyltransferase mRNA, complete cds Length = 1803 Score = 93.7 bits (47), Expect = 7e-16 Identities = 98/115 (85%) Strand = Plus / Minus Query: 468 cgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctc 527 |||| ||||||||||||||||| ||||| |||||||| || ||||||||||||||||| | Sbjct: 1363 cgaaatcctcctcaacaaatccccttgaagtaagcgcaggagttcccatcctgatgccac 1304 Query: 528 cgggtaccatagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatg 582 | || |||||||| || ||||| || ||||| ||||| || || || |||||||| Sbjct: 1303 caggaaccatagcagacacatctcctggaactgtgtttttattagcagcaatatg 1249 Score = 42.1 bits (21), Expect = 2.2 Identities = 54/65 (83%) Strand = Plus / Minus Query: 260 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctcc 319 |||||||||||||| |||| || || || || ||||| |||||||||||| | ||||| Sbjct: 1571 ttgtacttcatggttgctttttcaaaaccaatggttggaaattgttttgcaaactcctca 1512 Query: 320 acatc 324 ||||| Sbjct: 1511 acatc 1507
>gb|BT013569.1| Lycopersicon esculentum clone 132307R, mRNA sequence Length = 1923 Score = 85.7 bits (43), Expect = 2e-13 Identities = 127/155 (81%) Strand = Plus / Minus Query: 473 tcctcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggt 532 |||||||||||||| ||||| || || || || ||||| ||||| | ||||| || ||| Sbjct: 1376 tcctcctcaacaaaacctctagaagtgagagctggggtgcccatgcgaatgccaccaggt 1317 Query: 533 accatagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttct 592 ||||| || || ||||||||||| ||||| ||||| || |||||||||||||| ||| Sbjct: 1316 accatggcagatacatcaccaggcacagtattcttattggctgcaatatgcaccgactct 1257 Query: 593 aaaaccttctccactcttgaaccatctattccctt 627 ||||||||||| ||||| || ||||| || ||||| Sbjct: 1256 aaaaccttctcaactctagatccatcaataccctt 1222 Score = 44.1 bits (22), Expect = 0.55 Identities = 52/62 (83%) Strand = Plus / Minus Query: 257 ttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcc 316 |||||||| ||||| || ||||||||||| || | || ||||||||||| ||||| ||| Sbjct: 1592 ttcttgtatttcattgtttctttctcgaaaccaacagtagggaattgtttggcatagtcc 1533 Query: 317 tc 318 || Sbjct: 1532 tc 1531
>emb|Z25863.1|STGHMT S.tuberosum mRNA for glycine hydroxymethyltransferase Length = 1745 Score = 79.8 bits (40), Expect = 1e-11 Identities = 82/96 (85%) Strand = Plus / Minus Query: 252 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 311 ||||||| |||||||||||||| |||||||| || || ||||| ||||| || || |||| Sbjct: 1563 cttagtttttgtacttcatggtttctttctcaaacccaattgtagggaactgcttagcat 1504 Query: 312 attcctccacatcgtggcgaagctttgcaatttcag 347 | ||||||||||| || || || ||||||||||||| Sbjct: 1503 actcctccacatcatgacggagttttgcaatttcag 1468 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 509 gttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttg 568 |||||||| |||||||| || || ||||| || || ||||| |||||||| ||||||||| Sbjct: 1306 gttcccattctgatgccaccagggaccatggcagatacatctccaggaacggtgttcttg 1247 Query: 569 tttgctgcaatatg 582 || ||||||||||| Sbjct: 1246 ttggctgcaatatg 1233
>ref|NM_119954.2| Arabidopsis thaliana SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase AT4G37930 (SHM1) mRNA, complete cds Length = 1822 Score = 75.8 bits (38), Expect = 2e-10 Identities = 146/182 (80%) Strand = Plus / Minus Query: 446 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 505 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1484 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1425 Query: 506 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 565 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1424 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1365 Query: 566 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 625 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1364 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1305 Query: 626 tt 627 || Sbjct: 1304 tt 1303 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 253 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 300 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1677 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1630
>emb|AJ271726.1|ATH271726 Arabidopsis thaliana mRNA for serine hydroxymethyl transferase (shm1 gene) Length = 1797 Score = 75.8 bits (38), Expect = 2e-10 Identities = 146/182 (80%) Strand = Plus / Minus Query: 446 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 505 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1460 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1401 Query: 506 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 565 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1400 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1341 Query: 566 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 625 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1340 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1281 Query: 626 tt 627 || Sbjct: 1280 tt 1279 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 253 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 300 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1653 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1606
>gb|AY070726.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1775 Score = 75.8 bits (38), Expect = 2e-10 Identities = 146/182 (80%) Strand = Plus / Minus Query: 446 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 505 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1468 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1409 Query: 506 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 565 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1408 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1349 Query: 566 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 625 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1348 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1289 Query: 626 tt 627 || Sbjct: 1288 tt 1287 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 253 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 300 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1661 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1614
>gb|AY057645.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1716 Score = 75.8 bits (38), Expect = 2e-10 Identities = 146/182 (80%) Strand = Plus / Minus Query: 446 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 505 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1414 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1355 Query: 506 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 565 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1354 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1295 Query: 566 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 625 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1294 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1235 Query: 626 tt 627 || Sbjct: 1234 tt 1233 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 253 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 300 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1607 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1560
>gb|AF428388.1|AF428388 Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1730 Score = 75.8 bits (38), Expect = 2e-10 Identities = 146/182 (80%) Strand = Plus / Minus Query: 446 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 505 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1415 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1356 Query: 506 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 565 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1355 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1296 Query: 566 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 625 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1295 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1236 Query: 626 tt 627 || Sbjct: 1235 tt 1234 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 253 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 300 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1608 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1561
>gb|AY054254.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1770 Score = 75.8 bits (38), Expect = 2e-10 Identities = 146/182 (80%) Strand = Plus / Minus Query: 446 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 505 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1468 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1409 Query: 506 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 565 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1408 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1349 Query: 566 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 625 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1348 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1289 Query: 626 tt 627 || Sbjct: 1288 tt 1287 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 253 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 300 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1661 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1614
>gb|BT006353.1| Arabidopsis thaliana At4g37930/F20D10_50 gene, complete cds Length = 1554 Score = 75.8 bits (38), Expect = 2e-10 Identities = 146/182 (80%) Strand = Plus / Minus Query: 446 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 505 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1361 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1302 Query: 506 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 565 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1301 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1242 Query: 566 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 625 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1241 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1182 Query: 626 tt 627 || Sbjct: 1181 tt 1180 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 253 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 300 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1554 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1507
>emb|BX828432.1|CNS0A3VV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZH08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1771 Score = 75.8 bits (38), Expect = 2e-10 Identities = 146/182 (80%) Strand = Plus / Minus Query: 446 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 505 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1457 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1398 Query: 506 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 565 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1397 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1338 Query: 566 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 625 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1337 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1278 Query: 626 tt 627 || Sbjct: 1277 tt 1276 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 253 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 300 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1650 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1603
>gb|AY089107.1| Arabidopsis thaliana clone 33799 mRNA, complete sequence Length = 1725 Score = 75.8 bits (38), Expect = 2e-10 Identities = 146/182 (80%) Strand = Plus / Minus Query: 446 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 505 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1423 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1364 Query: 506 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 565 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1363 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1304 Query: 566 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 625 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1303 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1244 Query: 626 tt 627 || Sbjct: 1243 tt 1242 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 253 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 300 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1616 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1569
>gb|DQ139269.1| Medicago truncatula serine hydroxymethyltransferase mRNA, complete cds Length = 1524 Score = 71.9 bits (36), Expect = 2e-09 Identities = 123/152 (80%) Strand = Plus / Minus Query: 476 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 535 ||||||||||| || || |||||||| || || |||||||| ||||| ||||| || ||| Sbjct: 1301 tcctcaacaaaacccctagatgtaagagcaggagttcccattctgatccctccaggaacc 1242 Query: 536 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 595 || || || ||||| || ||||||||||| || || || || ||||| || |||||| Sbjct: 1241 attgcagacacatctcctggaacagtgtttttattggcagctatatgaactgattctaac 1182 Query: 596 accttctccactcttgaaccatctattccctt 627 |||||||| || ||||||||||| || ||||| Sbjct: 1181 accttctcaacccttgaaccatcaatgccctt 1150
>emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88 Length = 198493 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 253 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 300 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 134324 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 134371 Score = 54.0 bits (27), Expect = 6e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 512 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 571 ||||| ||||| || || || ||||| || |||||||| |||||||||||||| ||||| Sbjct: 134747 cccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgtttttgttg 134806 Query: 572 gctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccct 626 | |||||| || ||| ||| || || ||||| ||||| || ||||| ||||||| Sbjct: 134807 gatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccct 134861
>emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project) Length = 147215 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 253 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 300 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 19909 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 19956 Score = 54.0 bits (27), Expect = 6e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 512 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 571 ||||| ||||| || || || ||||| || |||||||| |||||||||||||| ||||| Sbjct: 20332 cccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgtttttgttg 20391 Query: 572 gctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccct 626 | |||||| || ||| ||| || || ||||| ||||| || ||||| ||||||| Sbjct: 20392 gatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccct 20446
>dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557 Length = 87695 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 260 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctcc 319 ||||||||||| || | ||||| || || || ||||| || ||||| ||||| ||||| Sbjct: 7579 ttgtacttcattgttgccttctcaaaaccaatggttggaaactgtttcgcatactcctca 7520 Query: 320 acatcgtggcgaagctttgcaat 342 ||||||||||||||||||||||| Sbjct: 7519 acatcgtggcgaagctttgcaat 7497 Score = 48.1 bits (24), Expect = 0.035 Identities = 57/68 (83%) Strand = Plus / Minus Query: 512 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 571 ||||||| |||||| || || |||||||| || ||||| || ||||| ||||| || ||| Sbjct: 7111 cccatccggatgccaccaggaaccatagcagacacatctcccggaacggtgtttttattt 7052 Query: 572 gctgcaat 579 |||||||| Sbjct: 7051 gctgcaat 7044
>dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H01, TM0541, complete sequence Length = 110985 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 260 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctcc 319 ||||||||||| || | ||||| || || || ||||| || ||||| ||||| ||||| Sbjct: 95182 ttgtacttcattgttgccttctcaaaaccaatggttggaaactgtttcgcatactcctca 95123 Query: 320 acatcgtggcgaagctttgcaat 342 ||||||||||||||||||||||| Sbjct: 95122 acatcgtggcgaagctttgcaat 95100 Score = 48.1 bits (24), Expect = 0.035 Identities = 57/68 (83%) Strand = Plus / Minus Query: 512 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 571 ||||||| |||||| || || |||||||| || ||||| || ||||| ||||| || ||| Sbjct: 94714 cccatccggatgccaccaggaaccatagcagacacatctcccggaacggtgtttttattt 94655 Query: 572 gctgcaat 579 |||||||| Sbjct: 94654 gctgcaat 94647
>gb|AC126010.13| Medicago truncatula clone mth2-20e4, complete sequence Length = 113964 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 512 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 571 ||||||||||| || || || |||||||| || ||||| || ||||||||||| || || Sbjct: 58327 cccatcctgataccaccaggaaccatagcagacacatctcctggaacagtgtttttatta 58268 Query: 572 gctgcaatatg 582 ||||||||||| Sbjct: 58267 gctgcaatatg 58257 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 468 cgaagtcctcctcaacaaatcctcttgatgtaag 501 |||| ||||||||||||||||| ||||| ||||| Sbjct: 58456 cgaaatcctcctcaacaaatccccttgaagtaag 58423
>gb|AF416481.1|AF416481 Cicer arietinum hydroxymethyl transferase mRNA, partial cds Length = 284 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Minus Query: 260 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctc 318 |||||||||||||| |||| || || || || ||||| |||||||||||| ||||||| Sbjct: 68 ttgtacttcatggttgctttttcaaaaccaatggttggaaattgttttgcaaattcctc 10
>emb|CR962125.2| Medicago truncatula chromosome 5 clone mth2-179a9, COMPLETE SEQUENCE Length = 113972 Score = 46.1 bits (23), Expect = 0.14 Identities = 86/107 (80%) Strand = Plus / Minus Query: 512 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 571 ||||| ||||| ||||| || ||||| || || ||||| || ||||||||||| || || Sbjct: 22562 cccattctgatccctccaggaaccattgcagacacatctcctggaacagtgtttttattg 22503 Query: 572 gctgcaatatgcacattttctaaaaccttctccactcttgaaccatc 618 || || ||||| || |||||| |||||||| || ||||||||||| Sbjct: 22502 gcagctatatgaactgattctaacaccttctcaacccttgaaccatc 22456
>ref|XM_706590.1| Candida albicans SC5314 hypothetical protein (SHM1) partial mRNA Length = 1482 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 538 agctgaaacatcaccaggaacagtgttctt 567 |||||| |||||||||||||| |||||||| Sbjct: 1221 agctgatacatcaccaggaacggtgttctt 1192
>gb|AC129335.4| Mus musculus BAC clone RP23-109H7 from chromosome 1, complete sequence Length = 201274 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 414 ctttaaccttcaaagccaagtt 435 |||||||||||||||||||||| Sbjct: 32135 ctttaaccttcaaagccaagtt 32114
>ref|XM_883849.1| Candida albicans SC5314 hypothetical protein (CaJ7.0385) partial mRNA Length = 1482 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 538 agctgaaacatcaccaggaacagtgttctt 567 |||||| |||||||||||||| |||||||| Sbjct: 1221 agctgatacatcaccaggaacggtgttctt 1192
>gb|AC164169.8| Mus musculus 6 BAC RP23-413M4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209149 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 209 ttgtgcttcctgtttgcttcct 230 |||||||||||||||||||||| Sbjct: 194735 ttgtgcttcctgtttgcttcct 194756
>gb|AC153848.5| Mus musculus 6 BAC RP23-111L15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187830 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 209 ttgtgcttcctgtttgcttcct 230 |||||||||||||||||||||| Sbjct: 54206 ttgtgcttcctgtttgcttcct 54227
>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence Length = 949626 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 538 agctgaaacatcaccaggaacagtgttctt 567 |||||| |||||||||||||| |||||||| Sbjct: 736359 agctgatacatcaccaggaacggtgttctt 736388
>gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, complete sequence Length = 202155 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 tgcttcctgtttgcttccttgctgt 236 |||||||||||||||||| |||||| Sbjct: 70853 tgcttcctgtttgcttccgtgctgt 70877
>emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C10 on chromosome Xq21.1-21.3, complete sequence Length = 122049 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 342 tttcagcttggatgttgctgt 362 ||||||||||||||||||||| Sbjct: 104450 tttcagcttggatgttgctgt 104470
>emb|AL031985.10|HS228H13 Human DNA sequence from clone RP1-228H13 on chromosome 1p34.1-35.3 Contains the gene for a novel protein, a ribosomal protein L21 (RPL21), a ribosomal protein L10a (RPL10A) and the gene for a novel zinc finger protein, complete sequence Length = 139737 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 tgtgcttcctgtttgcttcct 230 ||||||||||||||||||||| Sbjct: 105621 tgtgcttcctgtttgcttcct 105601
>gb|AC012077.4|AC012077 Homo sapiens BAC clone RP11-524G14 from Y, complete sequence Length = 209287 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 342 tttcagcttggatgttgctgt 362 ||||||||||||||||||||| Sbjct: 169390 tttcagcttggatgttgctgt 169410
>gb|AC110036.8| Mus musculus chromosome 7, clone RP23-254F9, complete sequence Length = 185681 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 gggttcccatcctgatgcct 526 |||||||||||||||||||| Sbjct: 170075 gggttcccatcctgatgcct 170094
>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence Length = 256158 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 ctgtttgcttccttgctgtt 237 |||||||||||||||||||| Sbjct: 85155 ctgtttgcttccttgctgtt 85174
>ref|XM_458248.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C14113g) partial mRNA Length = 1482 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 548 tcaccaggaacagtgttcttgtttgctgcaat 579 ||||| ||||||||||||||||| || ||||| Sbjct: 1208 tcacctggaacagtgttcttgttggcagcaat 1177
>gb|AY669085.1| Toxoplasma gondii strain RH serine hydroxymethyltransferase (shmt) mRNA, complete cds Length = 1547 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 547 atcaccaggaacagtgttcttgtt 570 ||||||||| |||||||||||||| Sbjct: 1219 atcaccagggacagtgttcttgtt 1196
>gb|AC165079.2| Mus musculus BAC clone RP24-92K17 from chromosome 16, complete sequence Length = 156977 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 593 aaaaccttctccactcttga 612 |||||||||||||||||||| Sbjct: 96604 aaaaccttctccactcttga 96623
>ref|XM_745127.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g04710) partial mRNA Length = 1263 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 gcttccttgctgttgaaacacagc 247 |||||||||| ||||||||||||| Sbjct: 35 gcttccttgcagttgaaacacagc 12
>emb|Z78199.1|CEK12F2 Caenorhabditis elegans Cosmid K12F2, complete sequence Length = 12999 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 ggcgaagctttgcaatttcagctt 350 |||||||||| ||||||||||||| Sbjct: 7977 ggcgaagcttggcaatttcagctt 8000
>gb|AC116734.14| Mus musculus chromosome 7, clone RP23-359D11, complete sequence Length = 217741 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 gggttcccatcctgatgcct 526 |||||||||||||||||||| Sbjct: 34173 gggttcccatcctgatgcct 34192
>gb|AC104871.8| Mus musculus chromosome 13, clone RP23-281C23, complete sequence Length = 165863 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gaagctttgcaatttcagct 349 |||||||||||||||||||| Sbjct: 21826 gaagctttgcaatttcagct 21807
>emb|X08067.1|CEMYO3 Caenorhabditis elegans myo-3 gene for myosin heavy chain 3 (MHC-A) Length = 11621 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 327 ggcgaagctttgcaatttcagctt 350 |||||||||| ||||||||||||| Sbjct: 7886 ggcgaagcttggcaatttcagctt 7863
>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces hansenii Length = 1592360 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 548 tcaccaggaacagtgttcttgtttgctgcaat 579 ||||| ||||||||||||||||| || ||||| Sbjct: 1160303 tcacctggaacagtgttcttgttggcagcaat 1160272
>emb|BX323797.10| Zebrafish DNA sequence from clone DKEY-78A14 in linkage group 7, complete sequence Length = 101349 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 tcatatagcatatcagcgaaacat 82 ||||||||||||||| |||||||| Sbjct: 70623 tcatatagcatatcatcgaaacat 70600
>gb|AC087847.6| Homo sapiens chromosome 8, clone RP11-353D5, complete sequence Length = 170722 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 ttcttgtacttcatggtctc 276 |||||||||||||||||||| Sbjct: 117303 ttcttgtacttcatggtctc 117322
>ref|NM_073664.3| Caenorhabditis elegans MYOsin heavy chain structural genes family member (myo-3) (myo-3) mRNA, complete cds Length = 6059 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 327 ggcgaagctttgcaatttcagctt 350 |||||||||| ||||||||||||| Sbjct: 3565 ggcgaagcttggcaatttcagctt 3542
>gb|AC155267.1| Mus musculus BAC clone RP23-248M19 from chromosome 13, complete sequence Length = 178290 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 gaagctttgcaatttcagct 349 |||||||||||||||||||| Sbjct: 83245 gaagctttgcaatttcagct 83226
>gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160095 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 577 aatatgcacattttctaaaa 596 |||||||||||||||||||| Sbjct: 37622 aatatgcacattttctaaaa 37641
>dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPL12 Length = 87434 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tgcctgcaataagaaactat 113 |||||||||||||||||||| Sbjct: 54636 tgcctgcaataagaaactat 54617
>gb|AC009294.8|AC009294 Homo sapiens chromosome 11, clone 579_H_17, complete sequence Length = 211316 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 aagaaactattgacaaagtt 123 |||||||||||||||||||| Sbjct: 122669 aagaaactattgacaaagtt 122650
>gb|AC154712.2| Mus musculus BAC clone RP24-359J22 from 16, complete sequence Length = 144031 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 agcacatggagaaatgtgtg 26 |||||||||||||||||||| Sbjct: 8811 agcacatggagaaatgtgtg 8792
>dbj|AP003460.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-285P16, complete sequence Length = 171738 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 aagaaactattgacaaagtt 123 |||||||||||||||||||| Sbjct: 164989 aagaaactattgacaaagtt 165008
>gb|BC084962.1| Xenopus laevis hypothetical LOC495440, mRNA (cDNA clone MGC:84058 IMAGE:6948237), complete cds Length = 6578 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 acctgctgctgcagctttaa 419 |||||||||||||||||||| Sbjct: 240 acctgctgctgcagctttaa 221
>gb|AC168066.4| Mus musculus BAC clone RP23-134F19 from chromosome 16, complete sequence Length = 198238 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 agcacatggagaaatgtgtg 26 |||||||||||||||||||| Sbjct: 171582 agcacatggagaaatgtgtg 171563
>dbj|AB002815.1| Perilla frutescens mRNA for chalcone synthase, complete cds Length = 1449 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 cagtttggtacctgctgctg 410 |||||||||||||||||||| Sbjct: 1203 cagtttggtacctgctgctg 1222
>emb|AL772176.6| Mouse DNA sequence from clone RP23-37B18 on chromosome 4, complete sequence Length = 127986 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 589 ttctaaaaccttctccactcttga 612 |||||||||||| ||||||||||| Sbjct: 21941 ttctaaaaccttttccactcttga 21964 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,583,825 Number of Sequences: 3902068 Number of extensions: 6583825 Number of successful extensions: 157157 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 156853 Number of HSP's gapped (non-prelim): 284 length of query: 634 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 611 effective length of database: 17,143,297,704 effective search space: 10474554897144 effective search space used: 10474554897144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
