| Clone Name | rbags22n02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|D13147.1|WHTNANBU Triticum aestivum mRNA for elongation factor 1 beta', complete cds Length = 884 Score = 194 bits (98), Expect = 1e-46 Identities = 120/129 (93%) Strand = Plus / Minus Query: 37 accaatcccagtnccaagaatccagcagcaacaggngagcggacaaagattctanatntt 96 |||||||||||| |||||||||||||||||||||| | ||| |||||||||||| || || Sbjct: 704 accaatcccagtaccaagaatccagcagcaacaggtgggcgaacaaagattctagatctt 645 Query: 97 gttgaaggcaacgatgtcacacgactggacgtnctcgttgatgggcgcctcgcagagcac 156 |||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| Sbjct: 644 gttgaaggcaacgatgtcacacgactggacatactcgttgatgggcgcctcacagagcac 585 Query: 157 ttcctcaat 165 ||||||||| Sbjct: 584 ttcctcaat 576 Score = 79.8 bits (40), Expect = 4e-12 Identities = 43/44 (97%) Strand = Plus / Minus Query: 213 tgatctggagcttcttgatgccataacccacaggcatgagctta 256 ||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 540 tgatctggagcttcttgatgccataacccacaggcataagctta 497 Score = 50.1 bits (25), Expect = 0.003 Identities = 28/29 (96%) Strand = Plus / Minus Query: 1 tgtaagaggggttactaaatgggacgaca 29 |||||||||||| |||||||||||||||| Sbjct: 750 tgtaagaggggtaactaaatgggacgaca 722 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 191 tccagatcatgctgacgatcat 212 |||||||||||||||||||||| Sbjct: 532 tccagatcatgctgacgatcat 553
>emb|AJ277799.1|HVU277799 Hordeum vulgare mRNA for putative elongation factor 1 beta (eEF1Bbeta 25 gene) Length = 1000 Score = 58.0 bits (29), Expect = 1e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 215 atctggagcttcttgatgccataacccacaggcatgagctt 255 ||||||||||||||||||||||| || || ||||||||||| Sbjct: 653 atctggagcttcttgatgccatatccaactggcatgagctt 613
>gb|AY909456.1| Siniperca chuatsi clone C279 translation elongation factor eEF-1 delta mRNA, partial cds Length = 391 Score = 58.0 bits (29), Expect = 1e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 214 gatctggagcttcttgatgccataacccacagg 246 ||||||||||||||||||||| ||||||||||| Sbjct: 191 gatctggagcttcttgatgccgtaacccacagg 159
>gb|BT016424.1| Zea mays clone Contig257 mRNA sequence Length = 1064 Score = 48.1 bits (24), Expect = 0.014 Identities = 30/32 (93%) Strand = Plus / Minus Query: 158 tcctcaatgagagtgtcgacagacacgaggtc 189 ||||||||||||||||||||||| || ||||| Sbjct: 723 tcctcaatgagagtgtcgacagagacaaggtc 692
>gb|BT016185.1| Zea mays clone Contig18 mRNA sequence Length = 1070 Score = 48.1 bits (24), Expect = 0.014 Identities = 30/32 (93%) Strand = Plus / Minus Query: 158 tcctcaatgagagtgtcgacagacacgaggtc 189 ||||||||||||||||||||||| || ||||| Sbjct: 751 tcctcaatgagagtgtcgacagagacaaggtc 720
>gb|AY103717.1| Zea mays PCO098989 mRNA sequence Length = 1312 Score = 48.1 bits (24), Expect = 0.014 Identities = 30/32 (93%) Strand = Plus / Minus Query: 158 tcctcaatgagagtgtcgacagacacgaggtc 189 ||||||||||||||||||||||| || ||||| Sbjct: 917 tcctcaatgagagtgtcgacagagacaaggtc 886
>gb|AY398339.1| Danio rerio clone RK121A4C07 eukaryotic translation elongation factor 1 beta 2 (EEF1B2) mRNA, complete cds Length = 1045 Score = 46.1 bits (23), Expect = 0.055 Identities = 32/35 (91%) Strand = Plus / Minus Query: 214 gatctggagcttcttgatgccataacccacaggca 248 |||||| ||||||||||||||||| || ||||||| Sbjct: 850 gatctgcagcttcttgatgccatagccaacaggca 816
>gb|BC046042.1| Danio rerio eukaryotic translation elongation factor 1 beta 2, mRNA (cDNA clone MGC:56277 IMAGE:5602371), complete cds Length = 806 Score = 46.1 bits (23), Expect = 0.055 Identities = 32/35 (91%) Strand = Plus / Minus Query: 214 gatctggagcttcttgatgccataacccacaggca 248 |||||| ||||||||||||||||| || ||||||| Sbjct: 633 gatctgcagcttcttgatgccatagccaacaggca 599
>emb|CT009620.9| Zebrafish DNA sequence from clone CH73-187F10 in linkage group 6, complete sequence Length = 95528 Score = 46.1 bits (23), Expect = 0.055 Identities = 32/35 (91%) Strand = Plus / Plus Query: 214 gatctggagcttcttgatgccataacccacaggca 248 |||||| ||||||||||||||||| || ||||||| Sbjct: 89778 gatctgcagcttcttgatgccatagccaacaggca 89812
>emb|AJ237772.1|OLA237772 Oryzias latipes mRNA for elongation factor 1 beta, partial Length = 283 Score = 46.1 bits (23), Expect = 0.055 Identities = 29/31 (93%) Strand = Plus / Minus Query: 213 tgatctggagcttcttgatgccataacccac 243 ||||||| |||||||||||||| |||||||| Sbjct: 148 tgatctgcagcttcttgatgccgtaacccac 118
>ref|NM_199949.2| Danio rerio eukaryotic translation elongation factor 1 beta 2 (eef1b2), mRNA Length = 1045 Score = 46.1 bits (23), Expect = 0.055 Identities = 32/35 (91%) Strand = Plus / Minus Query: 214 gatctggagcttcttgatgccataacccacaggca 248 |||||| ||||||||||||||||| || ||||||| Sbjct: 850 gatctgcagcttcttgatgccatagccaacaggca 816
>gb|BC071464.1| Danio rerio eukaryotic translation elongation factor 1 beta 2, mRNA (cDNA clone MGC:86802 IMAGE:6901030), complete cds Length = 823 Score = 46.1 bits (23), Expect = 0.055 Identities = 32/35 (91%) Strand = Plus / Minus Query: 214 gatctggagcttcttgatgccataacccacaggca 248 |||||| ||||||||||||||||| || ||||||| Sbjct: 635 gatctgcagcttcttgatgccatagccaacaggca 601
>gb|DQ207867.1| Solanum tuberosum clone 085E09 putative elongation factor 1B alpha-subunit0like mRNA, complete cds Length = 957 Score = 42.1 bits (21), Expect = 0.85 Identities = 41/48 (85%) Strand = Plus / Minus Query: 95 ttgttgaaggcaacgatgtcacacgactggacgtnctcgttgatgggc 142 |||||||||||||| || ||||| |||||||| |||||||||||| Sbjct: 722 ttgttgaaggcaacaatatcacagctctggacgtattcgttgatgggc 675
>gb|DQ191626.1| Solanum tuberosum unknown mRNA Length = 1088 Score = 42.1 bits (21), Expect = 0.85 Identities = 41/48 (85%) Strand = Plus / Minus Query: 95 ttgttgaaggcaacgatgtcacacgactggacgtnctcgttgatgggc 142 |||||||||||||| || ||||| |||||||| |||||||||||| Sbjct: 706 ttgttgaaggcaacaatatcacagctctggacgtattcgttgatgggc 659
>emb|CR693296.2|CNS0FXWC Tetraodon nigroviridis full-length cDNA Length = 897 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Minus Query: 210 cattgatctggagcttcttgatgcc 234 |||||||||| |||||||||||||| Sbjct: 732 cattgatctgcagcttcttgatgcc 708
>emb|CR687266.2|CNS0FT8U Tetraodon nigroviridis full-length cDNA Length = 1316 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Minus Query: 210 cattgatctggagcttcttgatgcc 234 |||||||||| |||||||||||||| Sbjct: 1154 cattgatctgcagcttcttgatgcc 1130
>emb|AL157712.14| Human DNA sequence from clone RP11-339B9 on chromosome 10 Contains two CpG islands, complete sequence Length = 131112 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 gatcattgatctggagcttct 227 ||||||||||||||||||||| Sbjct: 71015 gatcattgatctggagcttct 71035
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Minus Query: 183 cgaggtcatccagatcatgctgacg 207 |||||||||||||||||||| |||| Sbjct: 1649764 cgaggtcatccagatcatgcagacg 1649740
>ref|NM_186038.2| Oryza sativa (japonica cultivar-group), mRNA Length = 998 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 213 tgatctggagcttcttgatgccataacccacaggca 248 ||||||| | ||||||||| || ||||||||||||| Sbjct: 649 tgatctgcaacttcttgatcccgtaacccacaggca 614
>ref|XM_506540.1| PREDICTED Oryza sativa (japonica cultivar-group), P0453E03.111 mRNA Length = 1000 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 213 tgatctggagcttcttgatgccataacccacaggca 248 ||||||| | ||||||||| || ||||||||||||| Sbjct: 651 tgatctgcaacttcttgatcccgtaacccacaggca 616
>ref|XM_505218.1| Yarrowia lipolytica CLIB122, YALI0F09669g predicted mRNA Length = 663 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ttgatctggagcttcttgat 231 |||||||||||||||||||| Sbjct: 554 ttgatctggagcttcttgat 535
>emb|AL627362.2|CNS07TIX DNA centromeric region sequence from BAC DP15B03, DP38F06 of chromosome 5 of Podospora anserina Length = 156244 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 ttgatctggagcttcttgat 231 |||||||||||||||||||| Sbjct: 53317 ttgatctggagcttcttgat 53336
>emb|AL645962.22| Mouse DNA sequence from clone RP23-217L7 on chromosome 11 Contains the Olfr54 gene for olfactory receptor 54, the gene for a novel protein (olfactory receptor MOR126-2 (MOR126-2)) and the Zfp354a gene for zinc finger protein 354A, complete sequence Length = 82484 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aagaatccagcagcaacagg 71 |||||||||||||||||||| Sbjct: 37065 aagaatccagcagcaacagg 37046
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 213 tgatctggagcttcttgatgccataacccacaggca 248 ||||||| | ||||||||| || ||||||||||||| Sbjct: 27890207 tgatctgcaacttcttgatcccgtaacccacaggca 27890172
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 213 tgatctggagcttcttgatgccataacccacaggca 248 ||||||| | ||||||||| || ||||||||||||| Sbjct: 53565 tgatctgcaacttcttgatcccgtaacccacaggca 53530
>dbj|AK121942.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107E20, full insert sequence Length = 1028 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 213 tgatctggagcttcttgatgccataacccacaggca 248 ||||||| | ||||||||| || ||||||||||||| Sbjct: 652 tgatctgcaacttcttgatcccgtaacccacaggca 617
>gb|AY363911.1| Penicillium citrinum unknown mRNA Length = 876 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ttgatctggagcttcttgat 231 |||||||||||||||||||| Sbjct: 592 ttgatctggagcttcttgat 573
>dbj|AK098892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001M09, full insert sequence Length = 998 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 213 tgatctggagcttcttgatgccataacccacaggca 248 ||||||| | ||||||||| || ||||||||||||| Sbjct: 649 tgatctgcaacttcttgatcccgtaacccacaggca 614
>dbj|AK061761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B01, full insert sequence Length = 1000 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 213 tgatctggagcttcttgatgccataacccacaggca 248 ||||||| | ||||||||| || ||||||||||||| Sbjct: 651 tgatctgcaacttcttgatcccgtaacccacaggca 616
>dbj|D12821.1|RICEF1B Oryza sativa (japonica cultivar-group) mRNA for elongation factor 1 beta', complete cds Length = 956 Score = 40.1 bits (20), Expect = 3.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 213 tgatctggagcttcttgatgccataacccacaggca 248 ||||||| | ||||||||| || ||||||||||||| Sbjct: 610 tgatctgcaacttcttgatcccgtaacccacaggca 575
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ttgatctggagcttcttgat 231 |||||||||||||||||||| Sbjct: 1322695 ttgatctggagcttcttgat 1322676 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,619,540 Number of Sequences: 3902068 Number of extensions: 1619540 Number of successful extensions: 21210 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21144 Number of HSP's gapped (non-prelim): 66 length of query: 260 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 238 effective length of database: 17,147,199,772 effective search space: 4081033545736 effective search space used: 4081033545736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)