ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22n02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|D13147.1|WHTNANBU Triticum aestivum mRNA for elongation fact... 194 1e-46
2emb|AJ277799.1|HVU277799 Hordeum vulgare mRNA for putative elong... 58 1e-05
3gb|AY909456.1| Siniperca chuatsi clone C279 translation elongati... 58 1e-05
4gb|BT016424.1| Zea mays clone Contig257 mRNA sequence 48 0.014
5gb|BT016185.1| Zea mays clone Contig18 mRNA sequence 48 0.014
6gb|AY103717.1| Zea mays PCO098989 mRNA sequence 48 0.014
7gb|AY398339.1| Danio rerio clone RK121A4C07 eukaryotic translati... 46 0.055
8gb|BC046042.1| Danio rerio eukaryotic translation elongation fac... 46 0.055
9emb|CT009620.9| Zebrafish DNA sequence from clone CH73-187F10 in... 46 0.055
10emb|AJ237772.1|OLA237772 Oryzias latipes mRNA for elongation fac... 46 0.055
11ref|NM_199949.2| Danio rerio eukaryotic translation elongation f... 46 0.055
12gb|BC071464.1| Danio rerio eukaryotic translation elongation fac... 46 0.055
13gb|DQ207867.1| Solanum tuberosum clone 085E09 putative elongatio... 42 0.85
14gb|DQ191626.1| Solanum tuberosum unknown mRNA 42 0.85
15emb|CR693296.2|CNS0FXWC Tetraodon nigroviridis full-length cDNA 42 0.85
16emb|CR687266.2|CNS0FT8U Tetraodon nigroviridis full-length cDNA 42 0.85
17emb|AL157712.14| Human DNA sequence from clone RP11-339B9 on chr... 42 0.85
18emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 0.85
19ref|NM_186038.2| Oryza sativa (japonica cultivar-group), mRNA 40 3.4
20ref|XM_506540.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 3.4
21ref|XM_505218.1| Yarrowia lipolytica CLIB122, YALI0F09669g predi... 40 3.4
22emb|AL627362.2|CNS07TIX DNA centromeric region sequence from BAC... 40 3.4
23emb|AL645962.22| Mouse DNA sequence from clone RP23-217L7 on chr... 40 3.4
24dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
25dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
26dbj|AK121942.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
27gb|AY363911.1| Penicillium citrinum unknown mRNA 40 3.4
28dbj|AK098892.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
29dbj|AK061761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
30dbj|D12821.1|RICEF1B Oryza sativa (japonica cultivar-group) mRNA... 40 3.4
31emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 3.4

>dbj|D13147.1|WHTNANBU Triticum aestivum mRNA for elongation factor 1 beta', complete cds
          Length = 884

 Score =  194 bits (98), Expect = 1e-46
 Identities = 120/129 (93%)
 Strand = Plus / Minus

                                                                       
Query: 37  accaatcccagtnccaagaatccagcagcaacaggngagcggacaaagattctanatntt 96
           |||||||||||| |||||||||||||||||||||| | ||| |||||||||||| || ||
Sbjct: 704 accaatcccagtaccaagaatccagcagcaacaggtgggcgaacaaagattctagatctt 645

                                                                       
Query: 97  gttgaaggcaacgatgtcacacgactggacgtnctcgttgatgggcgcctcgcagagcac 156
           |||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct: 644 gttgaaggcaacgatgtcacacgactggacatactcgttgatgggcgcctcacagagcac 585

                    
Query: 157 ttcctcaat 165
           |||||||||
Sbjct: 584 ttcctcaat 576



 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                       
Query: 213 tgatctggagcttcttgatgccataacccacaggcatgagctta 256
           ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 540 tgatctggagcttcttgatgccataacccacaggcataagctta 497



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 1   tgtaagaggggttactaaatgggacgaca 29
           |||||||||||| ||||||||||||||||
Sbjct: 750 tgtaagaggggtaactaaatgggacgaca 722



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 191 tccagatcatgctgacgatcat 212
           ||||||||||||||||||||||
Sbjct: 532 tccagatcatgctgacgatcat 553



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>emb|AJ277799.1|HVU277799 Hordeum vulgare mRNA for putative elongation factor 1 beta
           (eEF1Bbeta 25 gene)
          Length = 1000

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 215 atctggagcttcttgatgccataacccacaggcatgagctt 255
           ||||||||||||||||||||||| || || |||||||||||
Sbjct: 653 atctggagcttcttgatgccatatccaactggcatgagctt 613



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>gb|AY909456.1| Siniperca chuatsi clone C279 translation elongation factor eEF-1
           delta mRNA, partial cds
          Length = 391

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 214 gatctggagcttcttgatgccataacccacagg 246
           ||||||||||||||||||||| |||||||||||
Sbjct: 191 gatctggagcttcttgatgccgtaacccacagg 159



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>gb|BT016424.1| Zea mays clone Contig257 mRNA sequence
          Length = 1064

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 158 tcctcaatgagagtgtcgacagacacgaggtc 189
           ||||||||||||||||||||||| || |||||
Sbjct: 723 tcctcaatgagagtgtcgacagagacaaggtc 692



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>gb|BT016185.1| Zea mays clone Contig18 mRNA sequence
          Length = 1070

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 158 tcctcaatgagagtgtcgacagacacgaggtc 189
           ||||||||||||||||||||||| || |||||
Sbjct: 751 tcctcaatgagagtgtcgacagagacaaggtc 720



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>gb|AY103717.1| Zea mays PCO098989 mRNA sequence
          Length = 1312

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 158 tcctcaatgagagtgtcgacagacacgaggtc 189
           ||||||||||||||||||||||| || |||||
Sbjct: 917 tcctcaatgagagtgtcgacagagacaaggtc 886



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>gb|AY398339.1| Danio rerio clone RK121A4C07 eukaryotic translation elongation
           factor 1 beta 2 (EEF1B2) mRNA, complete cds
          Length = 1045

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 214 gatctggagcttcttgatgccataacccacaggca 248
           |||||| ||||||||||||||||| || |||||||
Sbjct: 850 gatctgcagcttcttgatgccatagccaacaggca 816



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>gb|BC046042.1| Danio rerio eukaryotic translation elongation factor 1 beta 2, mRNA
           (cDNA clone MGC:56277 IMAGE:5602371), complete cds
          Length = 806

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 214 gatctggagcttcttgatgccataacccacaggca 248
           |||||| ||||||||||||||||| || |||||||
Sbjct: 633 gatctgcagcttcttgatgccatagccaacaggca 599



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>emb|CT009620.9| Zebrafish DNA sequence from clone CH73-187F10 in linkage group 6,
             complete sequence
          Length = 95528

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 214   gatctggagcttcttgatgccataacccacaggca 248
             |||||| ||||||||||||||||| || |||||||
Sbjct: 89778 gatctgcagcttcttgatgccatagccaacaggca 89812



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>emb|AJ237772.1|OLA237772 Oryzias latipes mRNA for elongation factor 1 beta, partial
          Length = 283

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 213 tgatctggagcttcttgatgccataacccac 243
           ||||||| |||||||||||||| ||||||||
Sbjct: 148 tgatctgcagcttcttgatgccgtaacccac 118



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>ref|NM_199949.2| Danio rerio eukaryotic translation elongation factor 1 beta 2
           (eef1b2), mRNA
          Length = 1045

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 214 gatctggagcttcttgatgccataacccacaggca 248
           |||||| ||||||||||||||||| || |||||||
Sbjct: 850 gatctgcagcttcttgatgccatagccaacaggca 816



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>gb|BC071464.1| Danio rerio eukaryotic translation elongation factor 1 beta 2, mRNA
           (cDNA clone MGC:86802 IMAGE:6901030), complete cds
          Length = 823

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 214 gatctggagcttcttgatgccataacccacaggca 248
           |||||| ||||||||||||||||| || |||||||
Sbjct: 635 gatctgcagcttcttgatgccatagccaacaggca 601



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>gb|DQ207867.1| Solanum tuberosum clone 085E09 putative elongation factor 1B
           alpha-subunit0like mRNA, complete cds
          Length = 957

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 95  ttgttgaaggcaacgatgtcacacgactggacgtnctcgttgatgggc 142
           |||||||||||||| || |||||   ||||||||  ||||||||||||
Sbjct: 722 ttgttgaaggcaacaatatcacagctctggacgtattcgttgatgggc 675



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>gb|DQ191626.1| Solanum tuberosum unknown mRNA
          Length = 1088

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 95  ttgttgaaggcaacgatgtcacacgactggacgtnctcgttgatgggc 142
           |||||||||||||| || |||||   ||||||||  ||||||||||||
Sbjct: 706 ttgttgaaggcaacaatatcacagctctggacgtattcgttgatgggc 659



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>emb|CR693296.2|CNS0FXWC Tetraodon nigroviridis full-length cDNA
          Length = 897

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 210 cattgatctggagcttcttgatgcc 234
           |||||||||| ||||||||||||||
Sbjct: 732 cattgatctgcagcttcttgatgcc 708



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>emb|CR687266.2|CNS0FT8U Tetraodon nigroviridis full-length cDNA
          Length = 1316

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 210  cattgatctggagcttcttgatgcc 234
            |||||||||| ||||||||||||||
Sbjct: 1154 cattgatctgcagcttcttgatgcc 1130



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>emb|AL157712.14| Human DNA sequence from clone RP11-339B9 on chromosome 10 Contains two
             CpG islands, complete sequence
          Length = 131112

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 207   gatcattgatctggagcttct 227
             |||||||||||||||||||||
Sbjct: 71015 gatcattgatctggagcttct 71035



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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 183     cgaggtcatccagatcatgctgacg 207
               |||||||||||||||||||| ||||
Sbjct: 1649764 cgaggtcatccagatcatgcagacg 1649740



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>ref|NM_186038.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 998

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 213 tgatctggagcttcttgatgccataacccacaggca 248
           ||||||| | ||||||||| || |||||||||||||
Sbjct: 649 tgatctgcaacttcttgatcccgtaacccacaggca 614



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>ref|XM_506540.1| PREDICTED Oryza sativa (japonica cultivar-group), P0453E03.111 mRNA
          Length = 1000

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 213 tgatctggagcttcttgatgccataacccacaggca 248
           ||||||| | ||||||||| || |||||||||||||
Sbjct: 651 tgatctgcaacttcttgatcccgtaacccacaggca 616



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>ref|XM_505218.1| Yarrowia lipolytica CLIB122, YALI0F09669g predicted mRNA
          Length = 663

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 ttgatctggagcttcttgat 231
           ||||||||||||||||||||
Sbjct: 554 ttgatctggagcttcttgat 535



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>emb|AL627362.2|CNS07TIX DNA centromeric region sequence from BAC DP15B03, DP38F06 of chromosome
             5 of Podospora anserina
          Length = 156244

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   ttgatctggagcttcttgat 231
             ||||||||||||||||||||
Sbjct: 53317 ttgatctggagcttcttgat 53336



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>emb|AL645962.22| Mouse DNA sequence from clone RP23-217L7 on chromosome 11 Contains the
             Olfr54 gene for olfactory receptor 54, the gene for a
             novel protein (olfactory receptor MOR126-2 (MOR126-2)) and
             the Zfp354a gene for zinc finger protein 354A, complete
             sequence
          Length = 82484

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    aagaatccagcagcaacagg 71
             ||||||||||||||||||||
Sbjct: 37065 aagaatccagcagcaacagg 37046



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 213      tgatctggagcttcttgatgccataacccacaggca 248
                ||||||| | ||||||||| || |||||||||||||
Sbjct: 27890207 tgatctgcaacttcttgatcccgtaacccacaggca 27890172



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>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453E03
          Length = 159980

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 213   tgatctggagcttcttgatgccataacccacaggca 248
             ||||||| | ||||||||| || |||||||||||||
Sbjct: 53565 tgatctgcaacttcttgatcccgtaacccacaggca 53530



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>dbj|AK121942.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107E20, full
           insert sequence
          Length = 1028

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 213 tgatctggagcttcttgatgccataacccacaggca 248
           ||||||| | ||||||||| || |||||||||||||
Sbjct: 652 tgatctgcaacttcttgatcccgtaacccacaggca 617



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>gb|AY363911.1| Penicillium citrinum unknown mRNA
          Length = 876

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 ttgatctggagcttcttgat 231
           ||||||||||||||||||||
Sbjct: 592 ttgatctggagcttcttgat 573



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>dbj|AK098892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001M09, full
           insert sequence
          Length = 998

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 213 tgatctggagcttcttgatgccataacccacaggca 248
           ||||||| | ||||||||| || |||||||||||||
Sbjct: 649 tgatctgcaacttcttgatcccgtaacccacaggca 614



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>dbj|AK061761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B01, full
           insert sequence
          Length = 1000

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 213 tgatctggagcttcttgatgccataacccacaggca 248
           ||||||| | ||||||||| || |||||||||||||
Sbjct: 651 tgatctgcaacttcttgatcccgtaacccacaggca 616



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>dbj|D12821.1|RICEF1B Oryza sativa (japonica cultivar-group) mRNA for elongation factor 1
           beta', complete cds
          Length = 956

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 213 tgatctggagcttcttgatgccataacccacaggca 248
           ||||||| | ||||||||| || |||||||||||||
Sbjct: 610 tgatctgcaacttcttgatcccgtaacccacaggca 575



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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 212     ttgatctggagcttcttgat 231
               ||||||||||||||||||||
Sbjct: 1322695 ttgatctggagcttcttgat 1322676


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,619,540
Number of Sequences: 3902068
Number of extensions: 1619540
Number of successful extensions: 21210
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21144
Number of HSP's gapped (non-prelim): 66
length of query: 260
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 238
effective length of database: 17,147,199,772
effective search space: 4081033545736
effective search space used: 4081033545736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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