ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22m23 |
|---|---|
| Clone Library Name | barley_pub |
>RPB2_LYCES (Q42877) DNA-directed RNA polymerase II 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 2) Length = 1191 Score = 182 bits (461), Expect = 1e-45 Identities = 87/96 (90%), Positives = 92/96 (95%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDCMIAHGAA FLKERLFDQSDAYRVHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQ Sbjct: 1093 MERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQ 1152 Query: 465 VHIPYACKLLFQELMAMAIAPRMLTHEVKGARDKHR 358 VHIPYACKLLFQELMAMAIAPRMLT +VK A+D+ + Sbjct: 1153 VHIPYACKLLFQELMAMAIAPRMLTKDVKLAKDQKK 1188
>RPB2_ARATH (P38420) DNA-directed RNA polymerase II 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 2) Length = 1188 Score = 174 bits (440), Expect = 3e-43 Identities = 83/94 (88%), Positives = 88/94 (93%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDCMIAHGAA FLKERLFDQSDAYRVHVCE CGLIAIANLKKNSFECRGCKNKTDIVQ Sbjct: 1094 MERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQ 1153 Query: 465 VHIPYACKLLFQELMAMAIAPRMLTHEVKGARDK 364 V+IPYACKLLFQELM+MAIAPRMLT +K A+ + Sbjct: 1154 VYIPYACKLLFQELMSMAIAPRMLTKHLKSAKGR 1187
>RPB2_ASHGO (Q753Q4) DNA-directed RNA polymerase II polypeptide 2 (EC 2.7.7.6)| (RNA polymerase II subunit 2) Length = 1222 Score = 134 bits (337), Expect = 2e-31 Identities = 65/86 (75%), Positives = 71/86 (82%), Gaps = 1/86 (1%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAI-ANLKKNSFECRGCKNKTDIV 469 MERDCMIAHGAA FLKERL + SDA+RVH+C CGL+ + A LK N FECRGCKNK DI Sbjct: 1131 MERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMTVVAKLKHNQFECRGCKNKIDIY 1190 Query: 468 QVHIPYACKLLFQELMAMAIAPRMLT 391 QVHIPYA KLLFQELMAM IAPR+ T Sbjct: 1191 QVHIPYAAKLLFQELMAMNIAPRLYT 1216
>RPB2_DROME (P08266) DNA-directed RNA polymerase II 140 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 2) Length = 1176 Score = 134 bits (337), Expect = 2e-31 Identities = 61/84 (72%), Positives = 72/84 (85%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDC I+HGAA FL+ERLF+ SD YRVH+C CGLIAIANL+ N+FEC+GCKNKT I Q Sbjct: 1091 MERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQ 1150 Query: 465 VHIPYACKLLFQELMAMAIAPRML 394 V +PYA KLLFQELM+M IAPR++ Sbjct: 1151 VRLPYAAKLLFQELMSMNIAPRLM 1174
>RPB2_CAEEL (Q10578) DNA-directed RNA polymerase II second largest subunit (EC| 2.7.7.6) (RNA polymerase I subunit 2) Length = 1193 Score = 133 bits (335), Expect = 4e-31 Identities = 59/96 (61%), Positives = 74/96 (77%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDC I+HGA FL+ERLF+ SD Y V+VC CGLI +ANL+ NSFEC+ C+NKT + Sbjct: 1095 MERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSA 1154 Query: 465 VHIPYACKLLFQELMAMAIAPRMLTHEVKGARDKHR 358 V IPYACKLLFQELM+M+IAPR++ + R KH+ Sbjct: 1155 VRIPYACKLLFQELMSMSIAPRLMVKPRQSKRSKHQ 1190
>RPB2_MOUSE (Q8CFI7) DNA-directed RNA polymerase II 140 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 2) (RPB2) Length = 1174 Score = 130 bits (328), Expect = 3e-30 Identities = 58/85 (68%), Positives = 73/85 (85%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDC IAHGAA FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I Sbjct: 1089 MERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISL 1148 Query: 465 VHIPYACKLLFQELMAMAIAPRMLT 391 V +PYACKLLFQELM+M+IAPRM++ Sbjct: 1149 VRMPYACKLLFQELMSMSIAPRMMS 1173
>RPB2_HUMAN (P30876) DNA-directed RNA polymerase II 140 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 2) (RPB2) Length = 1174 Score = 130 bits (328), Expect = 3e-30 Identities = 58/85 (68%), Positives = 73/85 (85%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDC IAHGAA FL+ERLF+ SD Y+VHVC CG++AIAN + +++ECRGC+NKT I Sbjct: 1089 MERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISL 1148 Query: 465 VHIPYACKLLFQELMAMAIAPRMLT 391 V +PYACKLLFQELM+M+IAPRM++ Sbjct: 1149 VRMPYACKLLFQELMSMSIAPRMMS 1173
>RPB2_CANGA (Q6FLD5) DNA-directed RNA polymerase II polypeptide 2 (EC 2.7.7.6)| (RNA polymerase II subunit 2) Length = 1223 Score = 127 bits (320), Expect = 2e-29 Identities = 61/86 (70%), Positives = 69/86 (80%), Gaps = 1/86 (1%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA-IANLKKNSFECRGCKNKTDIV 469 MERDCMIAHGAA FLKERL + SDA+RVH+C CGL++ IA L N FEC+GC NK DI Sbjct: 1132 MERDCMIAHGAAAFLKERLMEASDAFRVHICGICGLMSVIAKLNHNQFECKGCDNKIDIY 1191 Query: 468 QVHIPYACKLLFQELMAMAIAPRMLT 391 Q+HIPYA KLLFQELMAM I PR+ T Sbjct: 1192 QIHIPYAAKLLFQELMAMNITPRLYT 1217
>RPB2_YEAST (P08518) DNA-directed RNA polymerase II 140 kDa polypeptide (EC| 2.7.7.6) (B150) (RNA polymerase II subunit 2) Length = 1224 Score = 127 bits (319), Expect = 3e-29 Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 1/86 (1%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIA-IANLKKNSFECRGCKNKTDIV 469 MERDCMIAHGAA FLKERL + SDA+RVH+C CGL+ IA L N FEC+GC NK DI Sbjct: 1133 MERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIY 1192 Query: 468 QVHIPYACKLLFQELMAMAIAPRMLT 391 Q+HIPYA KLLFQELMAM I PR+ T Sbjct: 1193 QIHIPYAAKLLFQELMAMNITPRLYT 1218
>RPB2_SCHPO (Q02061) DNA-directed RNA polymerase II 138 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 2) Length = 1210 Score = 122 bits (307), Expect = 7e-28 Identities = 58/89 (65%), Positives = 71/89 (79%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDC I+HG + L+ERLFD SDAYRV VC+ CGLIAIA+ KK+S+ECR C+N+T Q Sbjct: 1122 MERDCQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQ 1181 Query: 465 VHIPYACKLLFQELMAMAIAPRMLTHEVK 379 V++PYA KLLFQELM+M IAPR+ T K Sbjct: 1182 VYLPYAAKLLFQELMSMNIAPRLFTKNHK 1210
>RPB2_ENCCU (Q8SR75) DNA-directed RNA polymerase II polypeptide 2 (EC 2.7.7.6)| (RNA polymerase II subunit 2) Length = 1141 Score = 105 bits (263), Expect = 9e-23 Identities = 52/87 (59%), Positives = 63/87 (72%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDC+I+HGA+ FLKERL D SDAY +VC+ CGL+A+ K N EC+GC N T++ Sbjct: 1057 MERDCIISHGASAFLKERLMDVSDAYSCYVCDFCGLLAMGGSKVN--ECKGCNNTTNVSM 1114 Query: 465 VHIPYACKLLFQELMAMAIAPRMLTHE 385 V IPYA KLL QELM M IAPR+ E Sbjct: 1115 VEIPYAFKLLIQELMGMNIAPRIRFEE 1141
>RPOB1_HALSA (P15351) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)| Length = 607 Score = 88.6 bits (218), Expect = 1e-17 Identities = 40/87 (45%), Positives = 54/87 (62%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERD +I HGAA LKERL D SD +HVC CG+ A+ N ++ C C+ +TD+ Sbjct: 519 MERDTVIGHGAAMVLKERLLDSSDREEIHVCGNCGMTAVENYEQRRVYCPNCEEETDVHS 578 Query: 465 VHIPYACKLLFQELMAMAIAPRMLTHE 385 + + YA KLL E+ A+ IAPR+ E Sbjct: 579 IEMSYAFKLLLDEMKALGIAPRLELEE 605
>RPC2_YEAST (P22276) DNA-directed RNA polymerase III 130 kDa polypeptide (EC| 2.7.7.6) (C128) (RNA polymerase III subunit 2) Length = 1149 Score = 87.4 bits (215), Expect = 3e-17 Identities = 43/88 (48%), Positives = 60/88 (68%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDC+IA+GA+ L ERL SDA+ V VC+KCGL+ + C CK+ +I++ Sbjct: 1065 MERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMGYSGW------CTTCKSAENIIK 1118 Query: 465 VHIPYACKLLFQELMAMAIAPRMLTHEV 382 + IPYA KLLFQEL++M IAPR+ ++ Sbjct: 1119 MTIPYAAKLLFQELLSMNIAPRLRLEDI 1146
>RPO2_MIMIV (Q7T6X7) DNA-directed RNA polymerase subunit 2 (EC 2.7.7.6)| Length = 1196 Score = 84.7 bits (208), Expect = 2e-16 Identities = 41/85 (48%), Positives = 53/85 (62%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERD + AHG A FLKE+ D SD Y HVC+ CG A +K + C GC+N T I + Sbjct: 1103 MERDALCAHGVAQFLKEKTVDNSDIYTCHVCDSCGQFAHKVPEKKYYTCTGCRNTTSISK 1162 Query: 465 VHIPYACKLLFQELMAMAIAPRMLT 391 + IPYA KLL QEL ++ I ++ T Sbjct: 1163 IVIPYAFKLLLQELASINILGKIRT 1187
>RPC2_MOUSE (P59470) DNA-directed RNA polymerase III subunit 127.6 kDa| polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2) Length = 1133 Score = 82.4 bits (202), Expect = 1e-15 Identities = 40/83 (48%), Positives = 52/83 (62%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDC+I +GA+ L ERL SDA+ V VC +CGL+ + C CK+ + Sbjct: 1050 MERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVSS 1103 Query: 465 VHIPYACKLLFQELMAMAIAPRM 397 + IPYACKLLFQEL +M I PR+ Sbjct: 1104 LRIPYACKLLFQELQSMNIIPRL 1126
>RPC2_HUMAN (Q9NW08) DNA-directed RNA polymerase III subunit 127.6 kDa| polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2) Length = 1133 Score = 82.4 bits (202), Expect = 1e-15 Identities = 40/83 (48%), Positives = 52/83 (62%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDC+I +GA+ L ERL SDA+ V VC +CGL+ + C CK+ + Sbjct: 1050 MERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVSS 1103 Query: 465 VHIPYACKLLFQELMAMAIAPRM 397 + IPYACKLLFQEL +M I PR+ Sbjct: 1104 LRIPYACKLLFQELQSMNIIPRL 1126
>RPC2_DROME (P25167) DNA-directed RNA polymerase III 128 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase III subunit 2) Length = 1137 Score = 80.9 bits (198), Expect = 3e-15 Identities = 36/84 (42%), Positives = 55/84 (65%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDC+I++GA+ + ERL SDA+ V VC CG +A + C C++ ++ + Sbjct: 1056 MERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSW------CHFCQSSANVSK 1109 Query: 465 VHIPYACKLLFQELMAMAIAPRML 394 + +PYACKLLFQEL +M + P+M+ Sbjct: 1110 ISMPYACKLLFQELTSMNVVPKMI 1133
>RPOB1_ARCFU (O28392) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)| Length = 604 Score = 80.5 bits (197), Expect = 4e-15 Identities = 38/84 (45%), Positives = 56/84 (66%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERD +I HGAA LK+RL ++SD V VC CG +A + ++N+ C C ++++I + Sbjct: 516 MERDVLIGHGAALLLKDRLLEESDKVEVWVCGNCGHVATYDYRRNTAYCHICDDESNIHK 575 Query: 465 VHIPYACKLLFQELMAMAIAPRML 394 V + YA KLL EL +M IAPR++ Sbjct: 576 VEMSYAFKLLLDELKSMMIAPRII 599
>RPC2_SCHPO (Q10233) Putative DNA-directed RNA polymerase III 130 kDa polypeptide| (EC 2.7.7.6) (RNA polymerase III subunit 2) Length = 1165 Score = 79.3 bits (194), Expect = 9e-15 Identities = 40/83 (48%), Positives = 54/83 (65%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDC+IA+GA+ L ERL SDA V VC +CGL+ C C++ ++V+ Sbjct: 1081 MERDCLIAYGASQLLLERLMISSDACDVDVCGQCGLLGYKGW------CNSCQSTREVVK 1134 Query: 465 VHIPYACKLLFQELMAMAIAPRM 397 + IPYA KLLFQEL++M I PR+ Sbjct: 1135 MTIPYAAKLLFQELLSMNIVPRL 1157
>RPOB1_METTW (P09845) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)| Length = 604 Score = 79.3 bits (194), Expect = 9e-15 Identities = 40/87 (45%), Positives = 57/87 (65%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDC+IAHGAA LKERL D+SD Y VC +CG+IAI + ++ C C++ ++ Sbjct: 517 MERDCLIAHGAALALKERLLDESDKYEALVCAECGMIAIYDKIRDKKYCPICED-SESFP 575 Query: 465 VHIPYACKLLFQELMAMAIAPRMLTHE 385 V I YA KLL EL ++ I P+++ + Sbjct: 576 VEISYAFKLLLDELKSLCIFPKLVLED 602
>RPOB_SULAC (P11513) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)| Length = 1126 Score = 78.2 bits (191), Expect = 2e-14 Identities = 37/87 (42%), Positives = 55/87 (63%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDC+I G A +K+RL D SD V++C++CG + + KN + C +K+ + Sbjct: 1030 MERDCLIGFGTAMLIKDRLLDNSDKAVVYICDQCGYVGWYDRSKNRYVCPVHGDKSVLHP 1089 Query: 465 VHIPYACKLLFQELMAMAIAPRMLTHE 385 V + YA KLL QELM+M I+PR++ E Sbjct: 1090 VTVSYAFKLLIQELMSMVISPRLILGE 1116
>RPOB1_METTH (O27124) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)| Length = 603 Score = 78.2 bits (191), Expect = 2e-14 Identities = 38/87 (43%), Positives = 56/87 (64%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERDC+IAHGAA LKERL D+SD Y VC CG+IA+ + ++ C C++ ++ Sbjct: 516 MERDCLIAHGAALALKERLLDESDKYEALVCADCGMIAVYDKIRDKKYCPICED-SESFP 574 Query: 465 VHIPYACKLLFQELMAMAIAPRMLTHE 385 V + YA KLL EL ++ I P+++ + Sbjct: 575 VEVSYAFKLLLDELKSLCIFPKLILED 601
>RPOB1_METVA (P41557) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)| Length = 614 Score = 76.6 bits (187), Expect = 6e-14 Identities = 42/89 (47%), Positives = 52/89 (58%), Gaps = 6/89 (6%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERD ++AHGAA LKERL D+SD + +VC KCG IAI + K+ C C DI Sbjct: 520 MERDVLVAHGAALLLKERLLDESDPHEDYVCAKCGEIAIFDYKRGMKFCPVCGESEDIQD 579 Query: 465 ------VHIPYACKLLFQELMAMAIAPRM 397 V I YA KLL EL +M I P++ Sbjct: 580 NRKIPPVKIAYAFKLLLDELKSMGIDPKL 608
>RPOB1_METJA (Q60181) DNA-directed RNA polymerase subunit B' (EC 2.7.7.6)| Length = 636 Score = 76.3 bits (186), Expect = 7e-14 Identities = 42/89 (47%), Positives = 51/89 (57%), Gaps = 6/89 (6%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGC------KN 484 MERD +I HGAA LKERL D+SD Y + +C KCG AI + K+ C C + Sbjct: 521 MERDVLIGHGAAMLLKERLMDESDPYDICICSKCGDFAILDYKRGLKYCPICGEIENLYS 580 Query: 483 KTDIVQVHIPYACKLLFQELMAMAIAPRM 397 I V IPYA KLL EL +M I PR+ Sbjct: 581 SKKIPFVRIPYAFKLLLDELKSMCILPRI 609
>RPOB_THECE (P31814) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)| Length = 1122 Score = 74.3 bits (181), Expect = 3e-13 Identities = 38/83 (45%), Positives = 49/83 (59%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 MERD +I HGAA L ERL ++SD V VCE CG IA+ + ++ C C + I + Sbjct: 1034 MERDVLIGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRGKVYCPVCGEEERISK 1093 Query: 465 VHIPYACKLLFQELMAMAIAPRM 397 V + YA KLL EL AM I P + Sbjct: 1094 VEMSYAFKLLLDELKAMGIRPSL 1116
>RPOB_THEAC (Q03587) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)| Length = 1195 Score = 73.6 bits (179), Expect = 5e-13 Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 2/91 (2%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVC--EKCGLIAIANLKKNSFECRGCKNKTDI 472 MERD +IAHGAA +K+RL DQSD ++VC CG IAI + +K + C C N +I Sbjct: 1105 MERDTLIAHGAAMVIKDRLLDQSDGTVLYVCGNPSCGHIAIYDRRKGTLRCPVCGNTGNI 1164 Query: 471 VQVHIPYACKLLFQELMAMAIAPRMLTHEVK 379 + YA KL+ EL+++ + R++ ++K Sbjct: 1165 YPIETSYAFKLMRDELISLGVVMRLMLGDMK 1195
>RPA2_DROME (P20028) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) Length = 1129 Score = 63.5 bits (153), Expect = 5e-10 Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 11/99 (11%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLI-----------AIANLKKNSFEC 499 MERD +I+HGAAF L++RLF SD VC KCG I L C Sbjct: 1031 MERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDTC 1090 Query: 498 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTHEV 382 R C + + + + IP++ K L EL ++ I R +E+ Sbjct: 1091 RLCGDNSSVSMIEIPFSFKYLVTELSSVNINARFKLNEI 1129
>RPA2_RAT (O54888) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) (RNA polymerase I 127 kDa subunit) Length = 1135 Score = 60.1 bits (144), Expect = 6e-09 Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 10/93 (10%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKK----------NSFECR 496 MERD ++AHG +F L +RLF+ SD HVC KCG + L+K + C Sbjct: 1040 MERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCT 1099 Query: 495 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 397 C I V +PY + EL AM I ++ Sbjct: 1100 VCGRSDSIDTVSVPYVFRYFVAELAAMNIKVKL 1132
>RPA2_HUMAN (Q9H9Y6) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) Length = 1135 Score = 60.1 bits (144), Expect = 6e-09 Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 10/93 (10%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKK----------NSFECR 496 MERD ++AHG +F L +RLF+ SD HVC KCG + L+K + C Sbjct: 1040 MERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCT 1099 Query: 495 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 397 C I V +PY + EL AM I ++ Sbjct: 1100 LCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1132
>RPA2_MOUSE (P70700) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) Length = 1135 Score = 58.2 bits (139), Expect = 2e-08 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 10/93 (10%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKK----------NSFECR 496 MERD ++AHG +F L +RLF+ SD HVC +CG + L+K + C Sbjct: 1040 MERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKPPPSWSAMRNRKYNCT 1099 Query: 495 GCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 397 C I V +PY + EL AM I ++ Sbjct: 1100 VCGRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1132
>RPA2_PONPY (Q5REE8) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase I subunit 2) (RPA135) Length = 1136 Score = 57.8 bits (138), Expect = 3e-08 Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 11/94 (11%) Frame = -1 Query: 645 MERDCMIAHGAAFFL-KERLFDQSDAYRVHVCEKCGLIAIANLKK----------NSFEC 499 MERD ++AHG +FFL +RLF+ SD HVC KCG + L+K + C Sbjct: 1040 MERDALLAHGTSFFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNC 1099 Query: 498 RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 397 C I V +PY + EL AM I ++ Sbjct: 1100 TLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKL 1133
>RPO2_FOWPV (Q9J544) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1161 Score = 50.4 bits (119), Expect = 4e-06 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 4/91 (4%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYR-VHVCEKCGLIAIANLKKNSFECRGCKN---KT 478 MERDC+IAHGAA + E L D + Y+ V+VCE CG IA K N+ C C T Sbjct: 1048 MERDCLIAHGAANTITEILKDSEEDYQDVYVCENCG--DIATKKNNNVYCIRCTKLNLYT 1105 Query: 477 DIVQVHIPYACKLLFQELMAMAIAPRMLTHE 385 + ++ + K+ ++ A I + +E Sbjct: 1106 VLTKIDTTHVSKVFLTQMNARGIKINLTFNE 1136
>RPA2_EUPOC (P28365) DNA-directed RNA polymerase I second largest subunit (EC| 2.7.7.6) (RNA polymerase I subunit 2) Length = 1166 Score = 50.4 bits (119), Expect = 4e-06 Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 28/107 (26%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAI-----ANLKKNSF-------- 505 MERD ++AHGAA+ L +RLF SD VC+ CG I A +K +F Sbjct: 1051 MERDSLLAHGAAYCLNDRLFRSSDYSEGFVCQNCGSILSCYVNRAIMKTQTFIPPSLDES 1110 Query: 504 ---------------ECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 409 C+ CK ++ +V +P+ + L EL +M I Sbjct: 1111 NKDTEDKEIHMNEKVICKVCKKNSNCKKVALPFVLRFLANELASMGI 1157
>RPO2_SHEVK (P16716) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| (HM1 protein) (Fragment) Length = 919 Score = 47.0 bits (110), Expect = 5e-05 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYR-VHVCEKCG-LIAIANLKKNSFECRGCKNKTDI 472 MERDC+IAHGAA + E L D + Y+ V+VCE CG + A K C T + Sbjct: 812 MERDCLIAHGAANTITEVLKDSEEDYQDVYVCENCGDITAQIQGNKVCIRCSKQNLSTIL 871 Query: 471 VQVHIPYACKLLFQELMAMAIAPRM 397 +V + K+ ++ A + ++ Sbjct: 872 TKVDTTHVAKVFITQMNARGVKVKL 896
>RPO2_VACCV (Q76ZP7) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYR-VHVCEKCGLIA 532 MERDC+IAHGAA + E L D + Y+ V+VCE CG IA Sbjct: 1056 MERDCLIAHGAANTITEVLKDSEEDYQDVYVCENCGDIA 1094
>RPO2_VACCT (Q9JF79) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYR-VHVCEKCGLIA 532 MERDC+IAHGAA + E L D + Y+ V+VCE CG IA Sbjct: 1056 MERDCLIAHGAANTITEVLKDSEEDYQDVYVCENCGDIA 1094
>RPO2_VACCC (P68694) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYR-VHVCEKCGLIA 532 MERDC+IAHGAA + E L D + Y+ V+VCE CG IA Sbjct: 1056 MERDCLIAHGAANTITEVLKDSEEDYQDVYVCENCGDIA 1094
>RPO2_RABPU (Q6RZF8) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYR-VHVCEKCGLIA 532 MERDC+IAHGAA + E L D + Y+ V+VCE CG IA Sbjct: 1056 MERDCLIAHGAANTITEVLKDSEEDYQDVYVCENCGDIA 1094
>RPO2_CWPXB (P17474) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYR-VHVCEKCGLIA 532 MERDC+IAHGAA + E L D + Y+ V+VCE CG IA Sbjct: 1056 MERDCLIAHGAANTITEVLKDSEEDYQDVYVCENCGDIA 1094
>RPO2_VACCA (O57230) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1156 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYR-VHVCEKCGLIA 532 MERDC+IAHGAA + E L D + Y+ V+VCE CG IA Sbjct: 1048 MERDCLIAHGAANTITEVLKDSEEDYQDVYVCENCGDIA 1086
>RPO2_VARV (P33811) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYR-VHVCEKCGLIA 532 MERDC+IAHGAA + E L D + Y+ V++CE CG IA Sbjct: 1056 MERDCLIAHGAANTITEVLKDSEEDYQDVYICENCGDIA 1094
>RPO2_MONPV (Q8V4V3) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYR-VHVCEKCGLIA 532 MERDC+IAHGAA + E L D + Y+ V++CE CG IA Sbjct: 1056 MERDCLIAHGAANTITEVLKDSEEDYQDVYICENCGDIA 1094
>RPO2_ECTVM (Q8JL90) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYR-VHVCEKCGLIA 532 MERDC+IAHGAA + E L D + Y+ V++CE CG IA Sbjct: 1056 MERDCLIAHGAANTITEVLKDSEEDYQDVYICENCGDIA 1094
>RPO2_CWPXG (Q80DV1) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYR-VHVCEKCGLIA 532 MERDC+IAHGAA + E L D + Y+ V++CE CG IA Sbjct: 1056 MERDCLIAHGAANTITEVLKDSEEDYQDVYICENCGDIA 1094
>RPO2_CAMPS (Q775Q3) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYR-VHVCEKCGLIA 532 MERDC+IAHGAA + E L D + Y+ V++CE CG IA Sbjct: 1056 MERDCLIAHGAANTITEVLKDSEEDYQDVYICENCGDIA 1094
>RPO2_CAMPM (Q8V2N1) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)| Length = 1164 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYR-VHVCEKCGLIA 532 MERDC+IAHGAA + E L D + Y+ V++CE CG IA Sbjct: 1056 MERDCLIAHGAANTITEVLKDSEEDYQDVYICENCGDIA 1094
>RPA2_YEAST (P22138) DNA-directed RNA polymerase I 135 kDa polypeptide (EC| 2.7.7.6) (A135) (RNA polymerase I subunit 2) Length = 1203 Score = 43.9 bits (102), Expect = 4e-04 Identities = 18/37 (48%), Positives = 25/37 (67%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLI 535 MERD +I HG +F L++RL + SD + VC +CG I Sbjct: 1074 MERDALIGHGTSFLLQDRLLNSSDYTQASVCRECGSI 1110
>RPA2_ASHGO (Q75DS1) DNA-directed RNA polymerase I polypeptide 2 (EC 2.7.7.6)| (RNA polymerase I subunit 2) Length = 1198 Score = 42.7 bits (99), Expect = 0.001 Identities = 18/37 (48%), Positives = 25/37 (67%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLI 535 MERD +I HG +F L++RL + SD + VC +CG I Sbjct: 1069 MERDALIGHGTSFLLQDRLLNSSDYTQSAVCRECGSI 1105
>RPA2_NEUCR (O74633) DNA-directed RNA polymerase I polypeptide 2 (EC 2.7.7.6)| (RNA polymerase I subunit 2) Length = 1234 Score = 40.8 bits (94), Expect = 0.003 Identities = 16/35 (45%), Positives = 25/35 (71%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCG 541 MERD ++AHG +F L++RL + SD + +C +CG Sbjct: 1089 MERDALLAHGTSFLLQDRLLNCSDYSKSWMCRQCG 1123
>RPA2_SCHPO (Q9P7X8) Probable DNA-directed RNA polymerase I polypeptide 2 (EC| 2.7.7.6) (RNA polymerase I subunit 2) Length = 1227 Score = 39.7 bits (91), Expect = 0.008 Identities = 17/37 (45%), Positives = 24/37 (64%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLI 535 MERD +I HG +F +++RL + SD + VC CG I Sbjct: 1112 MERDAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSI 1148
>RPO2_ASFB7 (P42487) DNA-directed RNA polymerase subunit 2 (EC 2.7.7.6)| Length = 1242 Score = 37.0 bits (84), Expect = 0.050 Identities = 20/61 (32%), Positives = 28/61 (45%) Frame = -1 Query: 645 MERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQ 466 ME + A GA + E+ D SD ++C CG AI N ++C C + DI Sbjct: 1150 MEHWVLTAQGAMQTIIEKSHDDSDGCISYICRNCGEPAIYNASHPIYKCMNCDVQADIGM 1209 Query: 465 V 463 V Sbjct: 1210 V 1210
>PERA_ALOVR (P84752) Peroxidase A (EC 1.11.1.7) (Fragments)| Length = 361 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/22 (63%), Positives = 17/22 (77%) Frame = -1 Query: 639 RDCMIAHGAAFFLKERLFDQSD 574 +DCMIAHGAA FLK R D ++ Sbjct: 120 KDCMIAHGAAHFLKXRPPDPAE 141
>PUM2_MOUSE (Q80U58) Pumilio homolog 2| Length = 1066 Score = 30.4 bits (67), Expect = 4.7 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +3 Query: 33 DLS*HRDGLVSSQFDNRFLLHMIQHGRPLICCLHISTVRVELL 161 +L H + LV Q+ N + H+++HGRP +S +R ++L Sbjct: 908 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVL 950
>PUM2_HUMAN (Q8TB72) Pumilio homolog 2 (Pumilio-2)| Length = 1066 Score = 30.4 bits (67), Expect = 4.7 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +3 Query: 33 DLS*HRDGLVSSQFDNRFLLHMIQHGRPLICCLHISTVRVELL 161 +L H + LV Q+ N + H+++HGRP +S +R ++L Sbjct: 908 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVL 950
>PUM1_MOUSE (Q80U78) Pumilio homolog 1| Length = 1189 Score = 29.6 bits (65), Expect = 8.0 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +3 Query: 33 DLS*HRDGLVSSQFDNRFLLHMIQHGRP 116 +L H + LV Q+ N + H+++HGRP Sbjct: 1031 ELHQHTEQLVQDQYGNYVIQHVLEHGRP 1058
>PUM1_HUMAN (Q14671) Pumilio homolog 1 (Pumilio-1) (HsPUM)| Length = 1186 Score = 29.6 bits (65), Expect = 8.0 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +3 Query: 33 DLS*HRDGLVSSQFDNRFLLHMIQHGRP 116 +L H + LV Q+ N + H+++HGRP Sbjct: 1028 ELHQHTEQLVQDQYGNYVIQHVLEHGRP 1055
>CLR4_SCHPO (O60016) Histone-lysine N-methyltransferase, H3 lysine-9 specific| (EC 2.1.1.43) (Histone H3-K9 methyltransferase) (H3-K9-HMTase) (Cryptic loci regulator 4) Length = 490 Score = 29.6 bits (65), Expect = 8.0 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -3 Query: 94 CSRNRLSNCELTRPSRCQERSSLNVPNRFMF 2 C+ + L C+L PSRC+ L+ P F + Sbjct: 260 CNCSSLGGCDLNNPSRCECLDDLDEPTHFAY 290 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,722,171 Number of Sequences: 219361 Number of extensions: 1808973 Number of successful extensions: 4296 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 4158 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4264 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
