| Clone Name | rbags22m22 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 341 bits (172), Expect = 2e-90 Identities = 324/372 (87%), Gaps = 2/372 (0%) Strand = Plus / Minus Query: 241 gtctcagtgctgcgaccactggatgctcttgatgtcgatgcctgccttagccatctcata 300 |||||||||||||| ||||||||| ||||||| ||| ||||||||||| ||||||||||| Sbjct: 10277442 gtctcagtgctgcgcccactggatactcttgaggtcaatgcctgccttggccatctcata 10277383 Query: 301 gagtggactcatctcacggagcttaagcacctgatggacagtgagctcagttgctctgtc 360 ||||||||||| ||||| ||||| ||||||||| || ||||||||| |||||||||| Sbjct: 10277382 cagtggactcatgtcacgaagcttcttcacctgatgcacggtgagctcaattgctctgtc 10277323 Query: 361 cacctcttcctcggtggtgaagcggcccatgccaaagcgaatggaggtgtgtgccatgtc 420 ||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||| Sbjct: 10277322 aacctcttcctcagtggtaaagcggccaatgccaaagcgaatggaggtgtgcgccatgtc 10277263 Query: 421 ctcatccacaccaagcgccctgagcacataggaaggctccagactagcactggtgcatgc 480 ||| || |||||||| |||| |||||||| || ||||||| || ||||| ||||| || Sbjct: 10277262 ctcttctacaccaagtgcccgcagcacataagagggctccaagctggcactagtgcaggc 10277203 Query: 481 actgccacttgacacagccacctccttcagccccatcagcaagctctcgccctcgacata 540 ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 10277202 actgccactcgacacagccacctccttcaggcccatcagcaagctctccccctcaacata 10277143 Query: 541 cgcaaatggacaagtttaggttgcccgcgtaacggtgctccatgcttaccgttgatgaca 600 |||||| ||||| || ||||| || | ||| || |||||||||||| || ||||| ||| Sbjct: 10277142 tgcaaat-gacaaattcaggttaccagggtaccgatgctccatgctt-ccattgataaca 10277085 Query: 601 acatcatcaacc 612 | |||||||||| Sbjct: 10277084 atatcatcaacc 10277073
>dbj|AP005554.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1118_A10 Length = 95161 Score = 341 bits (172), Expect = 2e-90 Identities = 324/372 (87%), Gaps = 2/372 (0%) Strand = Plus / Minus Query: 241 gtctcagtgctgcgaccactggatgctcttgatgtcgatgcctgccttagccatctcata 300 |||||||||||||| ||||||||| ||||||| ||| ||||||||||| ||||||||||| Sbjct: 78591 gtctcagtgctgcgcccactggatactcttgaggtcaatgcctgccttggccatctcata 78532 Query: 301 gagtggactcatctcacggagcttaagcacctgatggacagtgagctcagttgctctgtc 360 ||||||||||| ||||| ||||| ||||||||| || ||||||||| |||||||||| Sbjct: 78531 cagtggactcatgtcacgaagcttcttcacctgatgcacggtgagctcaattgctctgtc 78472 Query: 361 cacctcttcctcggtggtgaagcggcccatgccaaagcgaatggaggtgtgtgccatgtc 420 ||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||| Sbjct: 78471 aacctcttcctcagtggtaaagcggccaatgccaaagcgaatggaggtgtgcgccatgtc 78412 Query: 421 ctcatccacaccaagcgccctgagcacataggaaggctccagactagcactggtgcatgc 480 ||| || |||||||| |||| |||||||| || ||||||| || ||||| ||||| || Sbjct: 78411 ctcttctacaccaagtgcccgcagcacataagagggctccaagctggcactagtgcaggc 78352 Query: 481 actgccacttgacacagccacctccttcagccccatcagcaagctctcgccctcgacata 540 ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 78351 actgccactcgacacagccacctccttcaggcccatcagcaagctctccccctcaacata 78292 Query: 541 cgcaaatggacaagtttaggttgcccgcgtaacggtgctccatgcttaccgttgatgaca 600 |||||| ||||| || ||||| || | ||| || |||||||||||| || ||||| ||| Sbjct: 78291 tgcaaat-gacaaattcaggttaccagggtaccgatgctccatgctt-ccattgataaca 78234 Query: 601 acatcatcaacc 612 | |||||||||| Sbjct: 78233 atatcatcaacc 78222
>dbj|AK098947.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050E08, full insert sequence Length = 1849 Score = 341 bits (172), Expect = 2e-90 Identities = 324/372 (87%), Gaps = 2/372 (0%) Strand = Plus / Minus Query: 241 gtctcagtgctgcgaccactggatgctcttgatgtcgatgcctgccttagccatctcata 300 |||||||||||||| ||||||||| ||||||| ||| ||||||||||| ||||||||||| Sbjct: 1487 gtctcagtgctgcgcccactggatactcttgaggtcaatgcctgccttggccatctcata 1428 Query: 301 gagtggactcatctcacggagcttaagcacctgatggacagtgagctcagttgctctgtc 360 ||||||||||| ||||| ||||| ||||||||| || ||||||||| |||||||||| Sbjct: 1427 cagtggactcatgtcacgaagcttcttcacctgatgcacggtgagctcaattgctctgtc 1368 Query: 361 cacctcttcctcggtggtgaagcggcccatgccaaagcgaatggaggtgtgtgccatgtc 420 ||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||| Sbjct: 1367 aacctcttcctcagtggtaaagcggccaatgccaaagcgaatggaggtgtgcgccatgtc 1308 Query: 421 ctcatccacaccaagcgccctgagcacataggaaggctccagactagcactggtgcatgc 480 ||| || |||||||| |||| |||||||| || ||||||| || ||||| ||||| || Sbjct: 1307 ctcttctacaccaagtgcccgcagcacataagagggctccaagctggcactagtgcaggc 1248 Query: 481 actgccacttgacacagccacctccttcagccccatcagcaagctctcgccctcgacata 540 ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 1247 actgccactcgacacagccacctccttcaggcccatcagcaagctctccccctcaacata 1188 Query: 541 cgcaaatggacaagtttaggttgcccgcgtaacggtgctccatgcttaccgttgatgaca 600 |||||| ||||| || ||||| || | ||| || |||||||||||| || ||||| ||| Sbjct: 1187 tgcaaat-gacaaattcaggttaccagggtaccgatgctccatgctt-ccattgataaca 1130 Query: 601 acatcatcaacc 612 | |||||||||| Sbjct: 1129 atatcatcaacc 1118
>dbj|AK072043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108N11, full insert sequence Length = 1816 Score = 341 bits (172), Expect = 2e-90 Identities = 324/372 (87%), Gaps = 2/372 (0%) Strand = Plus / Minus Query: 241 gtctcagtgctgcgaccactggatgctcttgatgtcgatgcctgccttagccatctcata 300 |||||||||||||| ||||||||| ||||||| ||| ||||||||||| ||||||||||| Sbjct: 1487 gtctcagtgctgcgcccactggatactcttgaggtcaatgcctgccttggccatctcata 1428 Query: 301 gagtggactcatctcacggagcttaagcacctgatggacagtgagctcagttgctctgtc 360 ||||||||||| ||||| ||||| ||||||||| || ||||||||| |||||||||| Sbjct: 1427 cagtggactcatgtcacgaagcttcttcacctgatgcacggtgagctcaattgctctgtc 1368 Query: 361 cacctcttcctcggtggtgaagcggcccatgccaaagcgaatggaggtgtgtgccatgtc 420 ||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||| Sbjct: 1367 aacctcttcctcagtggtaaagcggccaatgccaaagcgaatggaggtgtgcgccatgtc 1308 Query: 421 ctcatccacaccaagcgccctgagcacataggaaggctccagactagcactggtgcatgc 480 ||| || |||||||| |||| |||||||| || ||||||| || ||||| ||||| || Sbjct: 1307 ctcttctacaccaagtgcccgcagcacataagagggctccaagctggcactagtgcaggc 1248 Query: 481 actgccacttgacacagccacctccttcagccccatcagcaagctctcgccctcgacata 540 ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 1247 actgccactcgacacagccacctccttcaggcccatcagcaagctctccccctcaacata 1188 Query: 541 cgcaaatggacaagtttaggttgcccgcgtaacggtgctccatgcttaccgttgatgaca 600 |||||| ||||| || ||||| || | ||| || |||||||||||| || ||||| ||| Sbjct: 1187 tgcaaat-gacaaattcaggttaccagggtaccgatgctccatgctt-ccattgataaca 1130 Query: 601 acatcatcaacc 612 | |||||||||| Sbjct: 1129 atatcatcaacc 1118
>dbj|AK068798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164B18, full insert sequence Length = 1793 Score = 341 bits (172), Expect = 2e-90 Identities = 324/372 (87%), Gaps = 2/372 (0%) Strand = Plus / Minus Query: 241 gtctcagtgctgcgaccactggatgctcttgatgtcgatgcctgccttagccatctcata 300 |||||||||||||| ||||||||| ||||||| ||| ||||||||||| ||||||||||| Sbjct: 1442 gtctcagtgctgcgcccactggatactcttgaggtcaatgcctgccttggccatctcata 1383 Query: 301 gagtggactcatctcacggagcttaagcacctgatggacagtgagctcagttgctctgtc 360 ||||||||||| ||||| ||||| ||||||||| || ||||||||| |||||||||| Sbjct: 1382 cagtggactcatgtcacgaagcttcttcacctgatgcacggtgagctcaattgctctgtc 1323 Query: 361 cacctcttcctcggtggtgaagcggcccatgccaaagcgaatggaggtgtgtgccatgtc 420 ||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||| Sbjct: 1322 aacctcttcctcagtggtaaagcggccaatgccaaagcgaatggaggtgtgcgccatgtc 1263 Query: 421 ctcatccacaccaagcgccctgagcacataggaaggctccagactagcactggtgcatgc 480 ||| || |||||||| |||| |||||||| || ||||||| || ||||| ||||| || Sbjct: 1262 ctcttctacaccaagtgcccgcagcacataagagggctccaagctggcactagtgcaggc 1203 Query: 481 actgccacttgacacagccacctccttcagccccatcagcaagctctcgccctcgacata 540 ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 1202 actgccactcgacacagccacctccttcaggcccatcagcaagctctccccctcaacata 1143 Query: 541 cgcaaatggacaagtttaggttgcccgcgtaacggtgctccatgcttaccgttgatgaca 600 |||||| ||||| || ||||| || | ||| || |||||||||||| || ||||| ||| Sbjct: 1142 tgcaaat-gacaaattcaggttaccagggtaccgatgctccatgctt-ccattgataaca 1085 Query: 601 acatcatcaacc 612 | |||||||||| Sbjct: 1084 atatcatcaacc 1073
>dbj|AK059171.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-F01, full insert sequence Length = 1605 Score = 341 bits (172), Expect = 2e-90 Identities = 324/372 (87%), Gaps = 2/372 (0%) Strand = Plus / Minus Query: 241 gtctcagtgctgcgaccactggatgctcttgatgtcgatgcctgccttagccatctcata 300 |||||||||||||| ||||||||| ||||||| ||| ||||||||||| ||||||||||| Sbjct: 1433 gtctcagtgctgcgcccactggatactcttgaggtcaatgcctgccttggccatctcata 1374 Query: 301 gagtggactcatctcacggagcttaagcacctgatggacagtgagctcagttgctctgtc 360 ||||||||||| ||||| ||||| ||||||||| || ||||||||| |||||||||| Sbjct: 1373 cagtggactcatgtcacgaagcttcttcacctgatgcacggtgagctcaattgctctgtc 1314 Query: 361 cacctcttcctcggtggtgaagcggcccatgccaaagcgaatggaggtgtgtgccatgtc 420 ||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||| Sbjct: 1313 aacctcttcctcagtggtaaagcggccaatgccaaagcgaatggaggtgtgcgccatgtc 1254 Query: 421 ctcatccacaccaagcgccctgagcacataggaaggctccagactagcactggtgcatgc 480 ||| || |||||||| |||| |||||||| || ||||||| || ||||| ||||| || Sbjct: 1253 ctcttctacaccaagtgcccgcagcacataagagggctccaagctggcactagtgcaggc 1194 Query: 481 actgccacttgacacagccacctccttcagccccatcagcaagctctcgccctcgacata 540 ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 1193 actgccactcgacacagccacctccttcaggcccatcagcaagctctccccctcaacata 1134 Query: 541 cgcaaatggacaagtttaggttgcccgcgtaacggtgctccatgcttaccgttgatgaca 600 |||||| ||||| || ||||| || | ||| || |||||||||||| || ||||| ||| Sbjct: 1133 tgcaaat-gacaaattcaggttaccagggtaccgatgctccatgctt-ccattgataaca 1076 Query: 601 acatcatcaacc 612 | |||||||||| Sbjct: 1075 atatcatcaacc 1064
>gb|AY107707.1| Zea mays PCO084690 mRNA sequence Length = 1491 Score = 299 bits (151), Expect = 6e-78 Identities = 306/355 (86%), Gaps = 2/355 (0%) Strand = Plus / Minus Query: 254 gaccactggatgctcttgatgtcgatgcctgccttagccatctcatagagtggactcatc 313 ||||||| ||||||||||| ||| ||||| ||||| ||||||||||||||||| ||||| Sbjct: 1108 gaccactcgatgctcttgaggtcaatgccagccttggccatctcatagagtgggctcatg 1049 Query: 314 tcacggagcttaagcacctgatggacagtgagctcagttgctctgtccacctcttcctcg 373 ||||||||||| ||||||||| ||||| |||||| ||||||||||||||||||| || Sbjct: 1048 tcacggagcttcttcacctgatgcacagtaagctcaattgctctgtccacctcttcgtca 989 Query: 374 gtggtgaagcggcccatgccaaagcgaatggaggtgtgtgccatgtcctcatccacacca 433 ||||| ||||| |||||||| || ||||| || ||||||||||| ||||| ||||| ||| Sbjct: 988 gtggtaaagcgacccatgccgaaacgaatagaagtgtgtgccatatcctcctccacccca 929 Query: 434 agcgccctgagcacataggaaggctccagactagcactggtgcatgcactgccacttgac 493 || |||| |||||||| || ||||||| || ||||| ||||| ||||| ||||||||| Sbjct: 928 agtgcccgcagcacatatgagggctccaagctggcactagtgcaggcactaccacttgac 869 Query: 494 acagccacctccttcagccccatcagcaagctctcgccctcgacatacgcaaatggacaa 553 ||||||||||||||||| |||||||| |||||||| || || ||||| |||||| ||||| Sbjct: 868 acagccacctccttcagacccatcagtaagctctccccttccacataagcaaat-gacaa 810 Query: 554 gtttaggttgcccgcgtaacggtgctccatgcttaccgttgatgacaacatcatc 608 ||||| ||||| | ||||||||||||||| ||| || ||||||||||||||||| Sbjct: 809 atttagattgcctgggtaacggtgctccatactt-ccattgatgacaacatcatc 756
>emb|CR955004.2| Medicago truncatula chromosome 5 clone mte1-9e19, COMPLETE SEQUENCE Length = 116493 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Minus Query: 446 acataggaaggctccagactagcactggtgcatgcactgccacttgacacagccacctcc 505 ||||| |||||||| | |||||| || ||||| ||||| |||||||| ||||| |||||| Sbjct: 109203 acataagaaggctctaaactagcgctagtgcaagcactaccacttgatacagcaacctcc 109144 Query: 506 ttcagccccatcagcaagctctcgccctcgacatacgcaaa 546 |||| |||||| ||||| ||||| || || ||||||||||| Sbjct: 109143 ttcaaccccataagcaaactctccccttcaacatacgcaaa 109103
>emb|CT573020.1| Medicago truncatula chromosome 5 clone mth2-83i12, COMPLETE SEQUENCE Length = 92109 Score = 81.8 bits (41), Expect = 2e-12 Identities = 86/101 (85%) Strand = Plus / Minus Query: 446 acataggaaggctccagactagcactggtgcatgcactgccacttgacacagccacctcc 505 ||||| |||||||| | |||||| || ||||| ||||| |||||||| ||||| |||||| Sbjct: 15670 acataagaaggctctaaactagcgctagtgcaagcactaccacttgatacagcaacctcc 15611 Query: 506 ttcagccccatcagcaagctctcgccctcgacatacgcaaa 546 |||| |||||| ||||| ||||| || || ||||||||||| Sbjct: 15610 ttcaaccccataagcaaactctccccttcaacatacgcaaa 15570
>gb|BT014067.1| Lycopersicon esculentum clone 133167F, mRNA sequence Length = 1620 Score = 77.8 bits (39), Expect = 4e-11 Identities = 93/111 (83%) Strand = Plus / Minus Query: 436 cgccctgagcacataggaaggctccagactagcactggtgcatgcactgccacttgacac 495 |||||| | ||| ||||| ||||||| ||| |||||||| || ||||| ||||| ||||| Sbjct: 1190 cgccctcaacacgtaggagggctccaaacttgcactggtacacgcacttccactcgacac 1131 Query: 496 agccacctccttcagccccatcagcaagctctcgccctcgacatacgcaaa 546 || ||||||||||| ||||||| ||||||||| || || ||||| ||||| Sbjct: 1130 tgcaacctccttcagacccatcaacaagctctcaccttccacatatgcaaa 1080
>dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181, complete sequence Length = 185320 Score = 73.8 bits (37), Expect = 6e-10 Identities = 121/149 (81%) Strand = Plus / Plus Query: 400 aatggaggtgtgtgccatgtcctcatccacaccaagcgccctgagcacataggaaggctc 459 |||||| ||||| ||||||||||| || || || | || || | |||||| |||||||| Sbjct: 54762 aatggaagtgtgagccatgtcctcttcgactcccaatgctctcaacacataagaaggctc 54821 Query: 460 cagactagcactggtgcatgcactgccacttgacacagccacctccttcagccccatcag 519 || |||||| || ||||| || || ||||| || ||||| |||||||||| |||||| || Sbjct: 54822 caaactagcgctagtgcaggcgctaccactggagacagcaacctccttcaaccccataag 54881 Query: 520 caagctctcgccctcgacatacgcaaatg 548 ||| ||||| || || ||||| ||||||| Sbjct: 54882 caaactctccccttcaacataggcaaatg 54910
>dbj|AP004955.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT19K21, TM0132, complete sequence Length = 59303 Score = 73.8 bits (37), Expect = 6e-10 Identities = 121/149 (81%) Strand = Plus / Plus Query: 400 aatggaggtgtgtgccatgtcctcatccacaccaagcgccctgagcacataggaaggctc 459 |||||| ||||| ||||||||||| || || || | || || | |||||| |||||||| Sbjct: 34242 aatggaagtgtgagccatgtcctcttcgactcccaatgctctcaacacataagaaggctc 34301 Query: 460 cagactagcactggtgcatgcactgccacttgacacagccacctccttcagccccatcag 519 || |||||| || ||||| || || ||||| || ||||| |||||||||| |||||| || Sbjct: 34302 caaactagcgctagtgcaggcgctaccactggagacagcaacctccttcaaccccataag 34361 Query: 520 caagctctcgccctcgacatacgcaaatg 548 ||| ||||| || || ||||| ||||||| Sbjct: 34362 caaactctccccttcaacataggcaaatg 34390
>ref|NM_125969.2| Arabidopsis thaliana transaminase AT5G65720 mRNA, complete cds Length = 1820 Score = 63.9 bits (32), Expect = 6e-07 Identities = 113/140 (80%) Strand = Plus / Minus Query: 407 gtgtgtgccatgtcctcatccacaccaagcgccctgagcacataggaaggctccagacta 466 ||||| |||||||| ||||||||||| | || || | |||||| |||||||||| ||| Sbjct: 1295 gtgtgagccatgtcttcatccacacccaaagctctcaacacataagaaggctccaaactc 1236 Query: 467 gcactggtgcatgcactgccacttgacacagccacctccttcagccccatcagcaagctc 526 ||||| || || ||||| ||||| ||||| || || ||||||| ||||||| ||| ||| Sbjct: 1235 gcactagtacaagcacttccactagacactgcaacttccttcaatcccatcaacaaactc 1176 Query: 527 tcgccctcgacatacgcaaa 546 || || || ||||| ||||| Sbjct: 1175 tctccttcaacataagcaaa 1156
>gb|AF229854.1| Arabidopsis thaliana cysteine desulfurase mRNA, complete cds Length = 1416 Score = 63.9 bits (32), Expect = 6e-07 Identities = 113/140 (80%) Strand = Plus / Minus Query: 407 gtgtgtgccatgtcctcatccacaccaagcgccctgagcacataggaaggctccagacta 466 ||||| |||||||| ||||||||||| | || || | |||||| |||||||||| ||| Sbjct: 1229 gtgtgagccatgtcttcatccacacccaaagctctcaacacataagaaggctccaaactc 1170 Query: 467 gcactggtgcatgcactgccacttgacacagccacctccttcagccccatcagcaagctc 526 ||||| || || ||||| ||||| ||||| || || ||||||| ||||||| ||| ||| Sbjct: 1169 gcactagtacaagcacttccactagacactgcaacttccttcaatcccatcaacaaactc 1110 Query: 527 tcgccctcgacatacgcaaa 546 || || || ||||| ||||| Sbjct: 1109 tctccttcaacataagcaaa 1090
>gb|AY096358.1| Arabidopsis thaliana putative NifS aminotransferase (At5g65720) mRNA, complete cds Length = 1393 Score = 63.9 bits (32), Expect = 6e-07 Identities = 113/140 (80%) Strand = Plus / Minus Query: 407 gtgtgtgccatgtcctcatccacaccaagcgccctgagcacataggaaggctccagacta 466 ||||| |||||||| ||||||||||| | || || | |||||| |||||||||| ||| Sbjct: 1199 gtgtgagccatgtcttcatccacacccaaagctctcaacacataagaaggctccaaactc 1140 Query: 467 gcactggtgcatgcactgccacttgacacagccacctccttcagccccatcagcaagctc 526 ||||| || || ||||| ||||| ||||| || || ||||||| ||||||| ||| ||| Sbjct: 1139 gcactagtacaagcacttccactagacactgcaacttccttcaatcccatcaacaaactc 1080 Query: 527 tcgccctcgacatacgcaaa 546 || || || ||||| ||||| Sbjct: 1079 tctccttcaacataagcaaa 1060
>gb|AY050874.1| Arabidopsis thaliana putative NifS aminotranfserase (At5g65720) mRNA, complete cds Length = 1841 Score = 63.9 bits (32), Expect = 6e-07 Identities = 113/140 (80%) Strand = Plus / Minus Query: 407 gtgtgtgccatgtcctcatccacaccaagcgccctgagcacataggaaggctccagacta 466 ||||| |||||||| ||||||||||| | || || | |||||| |||||||||| ||| Sbjct: 1296 gtgtgagccatgtcttcatccacacccaaagctctcaacacataagaaggctccaaactc 1237 Query: 467 gcactggtgcatgcactgccacttgacacagccacctccttcagccccatcagcaagctc 526 ||||| || || ||||| ||||| ||||| || || ||||||| ||||||| ||| ||| Sbjct: 1236 gcactagtacaagcacttccactagacactgcaacttccttcaatcccatcaacaaactc 1177 Query: 527 tcgccctcgacatacgcaaa 546 || || || ||||| ||||| Sbjct: 1176 tctccttcaacataagcaaa 1157
>emb|AL021684.1|ATF6H11 Arabidopsis thaliana DNA chromosome 5, BAC clone F6H11 (ESSAII project) Length = 118086 Score = 63.9 bits (32), Expect = 6e-07 Identities = 113/140 (80%) Strand = Plus / Plus Query: 407 gtgtgtgccatgtcctcatccacaccaagcgccctgagcacataggaaggctccagacta 466 ||||| |||||||| ||||||||||| | || || | |||||| |||||||||| ||| Sbjct: 69878 gtgtgagccatgtcttcatccacacccaaagctctcaacacataagaaggctccaaactc 69937 Query: 467 gcactggtgcatgcactgccacttgacacagccacctccttcagccccatcagcaagctc 526 ||||| || || ||||| ||||| ||||| || || ||||||| ||||||| ||| ||| Sbjct: 69938 gcactagtacaagcacttccactagacactgcaacttccttcaatcccatcaacaaactc 69997 Query: 527 tcgccctcgacatacgcaaa 546 || || || ||||| ||||| Sbjct: 69998 tctccttcaacataagcaaa 70017
>emb|AJ243393.1|ATH243393 Arabidopsis thaliana mRNA for nifS-like protein Length = 1362 Score = 63.9 bits (32), Expect = 6e-07 Identities = 113/140 (80%) Strand = Plus / Minus Query: 407 gtgtgtgccatgtcctcatccacaccaagcgccctgagcacataggaaggctccagacta 466 ||||| |||||||| ||||||||||| | || || | |||||| |||||||||| ||| Sbjct: 1199 gtgtgagccatgtcttcatccacacccaaagctctcaacacataagaaggctccaaactc 1140 Query: 467 gcactggtgcatgcactgccacttgacacagccacctccttcagccccatcagcaagctc 526 ||||| || || ||||| ||||| ||||| || || ||||||| ||||||| ||| ||| Sbjct: 1139 gcactagtacaagcacttccactagacactgcaacttccttcaatcccatcaacaaactc 1080 Query: 527 tcgccctcgacatacgcaaa 546 || || || ||||| ||||| Sbjct: 1079 tctccttcaacataagcaaa 1060
>dbj|AB010075.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPA24 Length = 84440 Score = 63.9 bits (32), Expect = 6e-07 Identities = 113/140 (80%) Strand = Plus / Minus Query: 407 gtgtgtgccatgtcctcatccacaccaagcgccctgagcacataggaaggctccagacta 466 ||||| |||||||| ||||||||||| | || || | |||||| |||||||||| ||| Sbjct: 49929 gtgtgagccatgtcttcatccacacccaaagctctcaacacataagaaggctccaaactc 49870 Query: 467 gcactggtgcatgcactgccacttgacacagccacctccttcagccccatcagcaagctc 526 ||||| || || ||||| ||||| ||||| || || ||||||| ||||||| ||| ||| Sbjct: 49869 gcactagtacaagcacttccactagacactgcaacttccttcaatcccatcaacaaactc 49810 Query: 527 tcgccctcgacatacgcaaa 546 || || || ||||| ||||| Sbjct: 49809 tctccttcaacataagcaaa 49790
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 358 gtccacctcttcctcggtggtgaagcggccca 389 ||||||||| |||||||||||||||||||||| Sbjct: 428359 gtccacctcctcctcggtggtgaagcggccca 428328
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 358 gtccacctcttcctcggtggtgaagcggccca 389 ||||||||| |||||||||||||||||||||| Sbjct: 78038 gtccacctcctcctcggtggtgaagcggccca 78007
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 374 gtggtgaagcggcccatgccaaagcgaatggaggtgtg 411 ||||| |||||||| ||||||||||| ||||||||||| Sbjct: 451646 gtggtaaagcggccaatgccaaagcggatggaggtgtg 451683
>ref|XM_842968.1| Leishmania major strain Friedlin cysteine desulfurase (LMJ_0364) partial mRNA Length = 1323 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 374 gtggtgaagcggcccatgccaaagcgaatggaggtgtg 411 ||||| |||||||| ||||||||||| ||||||||||| Sbjct: 1199 gtggtaaagcggccaatgccaaagcggatggaggtgtg 1162
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 358 gtccacctcttcctcggtggtgaagcggcccatgccaaagcg 399 ||||||||| ||||||||| |||||||||||| ||| ||||| Sbjct: 690702 gtccacctcctcctcggtgctgaagcggcccaggccgaagcg 690661
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 364 ctcttcctcggtggtgaagcggccca 389 |||||||||||||||||||||||||| Sbjct: 1139739 ctcttcctcggtggtgaagcggccca 1139764
>ref|XM_823163.1| Trypanosoma brucei TREU927 cysteine desulfurase (Tb11.55.0013) partial mRNA Length = 1314 Score = 48.1 bits (24), Expect = 0.034 Identities = 48/56 (85%) Strand = Plus / Minus Query: 359 tccacctcttcctcggtggtgaagcggcccatgccaaagcgaatggaggtgtgtgc 414 ||||||||| ||| || |||||||| || || ||||| ||||||||||||||||| Sbjct: 1205 tccacctctcgctcagtagtgaagcgaccgataccaaatcgaatggaggtgtgtgc 1150
>ref|XM_802872.1| Trypanosoma cruzi strain CL Brener cysteine desulfurase (Tc00.1047053509831.10) partial mRNA Length = 1341 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Minus Query: 374 gtggtgaagcggcccatgccaaagcgaatgga 405 |||||||||||||| || |||||||||||||| Sbjct: 1217 gtggtgaagcggccaataccaaagcgaatgga 1186
>ref|XM_811487.1| Trypanosoma cruzi strain CL Brener cysteine desulfurase (Tc00.1047053506629.70) partial mRNA Length = 1341 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Minus Query: 374 gtggtgaagcggcccatgccaaagcgaatgga 405 |||||||||||||| || |||||||||||||| Sbjct: 1217 gtggtgaagcggccaataccaaagcgaatgga 1186
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 365 tcttcctcggtggtgaagcggcc 387 ||||||||||||||||||||||| Sbjct: 1062940 tcttcctcggtggtgaagcggcc 1062918
>gb|AY113363.1| Drosophila melanogaster LD22661 full insert cDNA Length = 1552 Score = 44.1 bits (22), Expect = 0.54 Identities = 46/54 (85%) Strand = Plus / Minus Query: 358 gtccacctcttcctcggtggtgaagcggcccatgccaaagcgaatggaggtgtg 411 ||||||||| || ||||||| ||||| || ||||||||||| |||||| |||| Sbjct: 1346 gtccacctcctcgacggtggtaaagcgcccgatgccaaagcgtatggagctgtg 1293
>ref|NM_135689.2| Drosophila melanogaster CG12264-RA (CG12264), mRNA Length = 1533 Score = 44.1 bits (22), Expect = 0.54 Identities = 46/54 (85%) Strand = Plus / Minus Query: 358 gtccacctcttcctcggtggtgaagcggcccatgccaaagcgaatggaggtgtg 411 ||||||||| || ||||||| ||||| || ||||||||||| |||||| |||| Sbjct: 1346 gtccacctcctcgacggtggtaaagcgcccgatgccaaagcgtatggagctgtg 1293
>gb|AC011065.6| Drosophila melanogaster, chromosome 2L, region 33B-33B, BAC clone BACR37P12, complete sequence Length = 181103 Score = 44.1 bits (22), Expect = 0.54 Identities = 46/54 (85%) Strand = Plus / Minus Query: 358 gtccacctcttcctcggtggtgaagcggcccatgccaaagcgaatggaggtgtg 411 ||||||||| || ||||||| ||||| || ||||||||||| |||||| |||| Sbjct: 141947 gtccacctcctcgacggtggtaaagcgcccgatgccaaagcgtatggagctgtg 141894
>gb|AE003634.2| Drosophila melanogaster chromosome 2L, section 43 of 83 of the complete sequence Length = 265341 Score = 44.1 bits (22), Expect = 0.54 Identities = 46/54 (85%) Strand = Plus / Minus Query: 358 gtccacctcttcctcggtggtgaagcggcccatgccaaagcgaatggaggtgtg 411 ||||||||| || ||||||| ||||| || ||||||||||| |||||| |||| Sbjct: 176716 gtccacctcctcgacggtggtaaagcgcccgatgccaaagcgtatggagctgtg 176663
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome Length = 189370 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 360 ccacctcttcctcggtggtgaagcgg 385 ||||||||||||||| |||||||||| Sbjct: 110416 ccacctcttcctcgggggtgaagcgg 110391
>gb|AE004096.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 4 of 251 of the complete chromosome Length = 10846 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 267 tcttgatgtcgatgcctgccttagc 291 ||||||||||||||||| ||||||| Sbjct: 6677 tcttgatgtcgatgcctcccttagc 6701
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 cctcttcctcggtggtgaagc 383 ||||||||||||||||||||| Sbjct: 4597516 cctcttcctcggtggtgaagc 4597496
>gb|AC104164.2| Homo sapiens chromosome 3 clone RP11-641C17, complete sequence Length = 197483 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 tatgaagaaaaacaggatata 155 ||||||||||||||||||||| Sbjct: 100063 tatgaagaaaaacaggatata 100083
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 371 tcggtggtgaagcggcccatgccaaagcg 399 ||||||||||||||||||| ||| ||||| Sbjct: 3270178 tcggtggtgaagcggcccaggccgaagcg 3270206
>gb|AE004799.1| Pseudomonas aeruginosa PAO1, section 360 of 529 of the complete genome Length = 14652 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 364 ctcttcctcggtggtgaagcg 384 ||||||||||||||||||||| Sbjct: 4049 ctcttcctcggtggtgaagcg 4069
>gb|AC024075.4|AC024075 Homo sapiens chromosome 19 clone CTC-429P9, complete sequence Length = 96978 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 496 agccacctccttcagccccat 516 ||||||||||||||||||||| Sbjct: 60625 agccacctccttcagccccat 60605
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 cggtggtgaagcggcccatgc 392 ||||||||||||||||||||| Sbjct: 2260874 cggtggtgaagcggcccatgc 2260854
>gb|U66722.1|HSU66722 Human chromosome 3p14.2 fragile site FRA3B sequence Length = 110434 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 tatgaagaaaaacaggatata 155 ||||||||||||||||||||| Sbjct: 91757 tatgaagaaaaacaggatata 91737
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 583 tgcttaccgttgatgacaaca 603 ||||||||||||||||||||| Sbjct: 586604 tgcttaccgttgatgacaaca 586584
>gb|AC150675.2| Bos taurus BAC CH240-451M14 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 172241 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 cccatcagcaagctctcgcc 531 |||||||||||||||||||| Sbjct: 166893 cccatcagcaagctctcgcc 166912
>gb|AC110744.6| Mus musculus chromosome 8, clone RP23-307G24, complete sequence Length = 183023 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 agtgttcaaggtcacacact 105 |||||||||||||||||||| Sbjct: 81526 agtgttcaaggtcacacact 81507
>ref|XM_740860.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000246.00.0) partial mRNA Length = 3069 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ttcccttatgaagaaaaaca 148 |||||||||||||||||||| Sbjct: 2248 ttcccttatgaagaaaaaca 2267
>emb|BX018453.1|CNS08MEH Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA28AA06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 980 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 243 ctcagtgctgcgaccactggatgctctt 270 |||| ||||||||||||| ||||||||| Sbjct: 206 ctcaatgctgcgaccacttgatgctctt 233
>emb|Z97348.1|PFMAL3P1 Plasmodium falciparum MAL3P1, complete sequence Length = 65691 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ttcccttatgaagaaaaaca 148 |||||||||||||||||||| Sbjct: 41697 ttcccttatgaagaaaaaca 41678
>emb|AL671983.18| Mouse DNA sequence from clone RP23-232B3 on chromosome X, complete sequence Length = 176577 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 aaaaacaggatataacaagaacag 165 |||| ||||||||||||||||||| Sbjct: 158536 aaaaccaggatataacaagaacag 158513
>gb|AY129569.1| Homo sapiens polymerase (DNA directed), delta 1, catalytic subunit (POLD1) gene, complete cds Length = 35049 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ctcttcctcggtggtgaagc 383 |||||||||||||||||||| Sbjct: 31751 ctcttcctcggtggtgaagc 31770
>ref|XM_686090.1| PREDICTED: Danio rerio similar to Nitrogen fixation gene, yeast homolog 1 (LOC562714), mRNA Length = 2153 Score = 40.1 bits (20), Expect = 8.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 513 ccatcagcaagctctcgccctcgacatacgcaaatg 548 |||||| || |||||| ||||||||||| ||||||| Sbjct: 1259 ccatcaacaggctctctccctcgacataggcaaatg 1224
>gb|AC020909.9| Homo sapiens chromosome 19 clone CTD-2545M3, complete sequence Length = 100826 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ctcttcctcggtggtgaagc 383 |||||||||||||||||||| Sbjct: 13526 ctcttcctcggtggtgaagc 13545
>emb|BX001056.6| Zebrafish DNA sequence from clone CH211-15P9 in linkage group 11, complete sequence Length = 150229 Score = 40.1 bits (20), Expect = 8.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 513 ccatcagcaagctctcgccctcgacatacgcaaatg 548 |||||| || |||||| ||||||||||| ||||||| Sbjct: 133894 ccatcaacaggctctctccctcgacataggcaaatg 133929
>dbj|AG266837.1| Oryza officinalis DNA, gypsy-type retrotransposon sequence, clone: RIRE163 Length = 431 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 ttgatgacaacatcatcaac 611 |||||||||||||||||||| Sbjct: 328 ttgatgacaacatcatcaac 309
>dbj|AP001994.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-215D10, complete sequence Length = 167376 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 495 cagccacctccttcagcccc 514 |||||||||||||||||||| Sbjct: 150062 cagccacctccttcagcccc 150043
>gb|AF010139.1|AF010139 Azotobacter vinelandii iron-sulfur cluster assembly gene cluster, suhB, cysE2, iscS, iscU, iscA, hscB, hscA and fdx genes complete cds; ndk gene, partial cds Length = 7886 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 acctcttcctcggtggtgaa 381 |||||||||||||||||||| Sbjct: 3827 acctcttcctcggtggtgaa 3808
>emb|AL133246.3|CNS01DUJ BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 852C13 of library RPCI-11 from chromosome 2 of Homo sapiens (Human) Length = 222730 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 catagagtggactcatctca 316 |||||||||||||||||||| Sbjct: 85509 catagagtggactcatctca 85490 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,992,490 Number of Sequences: 3902068 Number of extensions: 4992490 Number of successful extensions: 98384 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 98040 Number of HSP's gapped (non-prelim): 351 length of query: 614 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 591 effective length of database: 17,143,297,704 effective search space: 10131688943064 effective search space used: 10131688943064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)