ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23b20 |
|---|---|
| Clone Library Name | barley_pub |
>SET_RAT (Q63945) Protein SET (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A)| (Template-activating factor I) (TAF-I) (Liver regeneration-related protein LRRGR00002) Length = 289 Score = 62.0 bits (149), Expect = 1e-09 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Frame = -1 Query: 589 ATSIKWKEGMEIN--GNAIKKKGSKRPLVEE--SFFTWFTDTEHKSLADGVQDEVAEIIK 422 +T IKWK G ++ + + K S++ EE SFFTWFTD +D DE+ E+IK Sbjct: 167 STEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDH-----SDAGADELGEVIK 221 Query: 421 EDLWPNPLKYF 389 +D+WPNPL+Y+ Sbjct: 222 DDIWPNPLQYY 232
>SET_MOUSE (Q9EQU5) Protein SET (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A)| (Template-activating factor I) (TAF-I) Length = 289 Score = 62.0 bits (149), Expect = 1e-09 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Frame = -1 Query: 589 ATSIKWKEGMEIN--GNAIKKKGSKRPLVEE--SFFTWFTDTEHKSLADGVQDEVAEIIK 422 +T IKWK G ++ + + K S++ EE SFFTWFTD +D DE+ E+IK Sbjct: 167 STEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDH-----SDAGADELGEVIK 221 Query: 421 EDLWPNPLKYF 389 +D+WPNPL+Y+ Sbjct: 222 DDIWPNPLQYY 232
>SET_HUMAN (Q01105) Protein SET (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A)| (Template-activating factor I) (TAF-I) (HLA-DR-associated protein II) (PHAPII) (Inhibitor of granzyme A-activated DNase) (IGAAD) Length = 290 Score = 62.0 bits (149), Expect = 1e-09 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Frame = -1 Query: 589 ATSIKWKEGMEIN--GNAIKKKGSKRPLVEE--SFFTWFTDTEHKSLADGVQDEVAEIIK 422 +T IKWK G ++ + + K S++ EE SFFTWFTD +D DE+ E+IK Sbjct: 168 STEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDH-----SDAGADELGEVIK 222 Query: 421 EDLWPNPLKYF 389 +D+WPNPL+Y+ Sbjct: 223 DDIWPNPLQYY 233
>SET_DROME (P53997) Protein SET| Length = 269 Score = 60.8 bits (146), Expect = 3e-09 Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 3/70 (4%) Frame = -1 Query: 589 ATSIKWKEGMEINGNAIKKK-GSKRPLVEE--SFFTWFTDTEHKSLADGVQDEVAEIIKE 419 +T IKWKEG + + K G+K+ E +FF WF+D D V DE+AE+IK+ Sbjct: 162 STPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKTFFDWFSDN-----TDPVNDEIAELIKD 216 Query: 418 DLWPNPLKYF 389 DLWPNPL+Y+ Sbjct: 217 DLWPNPLQYY 226
>TSYL1_HUMAN (Q9H0U9) Testis-specific Y-encoded-like protein 1 (TSPY-like 1)| Length = 438 Score = 50.4 bits (119), Expect = 4e-06 Identities = 24/38 (63%), Positives = 30/38 (78%) Frame = -1 Query: 502 SFFTWFTDTEHKSLADGVQDEVAEIIKEDLWPNPLKYF 389 SFFTWF+D SL + D++AEIIKEDLWPNPL+Y+ Sbjct: 377 SFFTWFSD---HSLPES--DKIAEIIKEDLWPNPLQYY 409
>TSYL1_MOUSE (O88852) Testis-specific Y-encoded-like protein 1 (TSPY-like 1)| Length = 379 Score = 50.1 bits (118), Expect = 5e-06 Identities = 24/38 (63%), Positives = 29/38 (76%) Frame = -1 Query: 502 SFFTWFTDTEHKSLADGVQDEVAEIIKEDLWPNPLKYF 389 SFFTWF+D SL + D +AEIIKEDLWPNPL+Y+ Sbjct: 318 SFFTWFSD---HSLPES--DRIAEIIKEDLWPNPLQYY 350
>TSYL3_HUMAN (Q9H489) Testis-specific Y-encoded-like protein 3 (TSPY-like 3)| Length = 355 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/67 (41%), Positives = 39/67 (58%) Frame = -1 Query: 589 ATSIKWKEGMEINGNAIKKKGSKRPLVEESFFTWFTDTEHKSLADGVQDEVAEIIKEDLW 410 AT I+W G E + + + R SFF+WF+ SL + D VA+IIK+DLW Sbjct: 269 ATRIRWHWGQEPPALVHRNRDTVR-----SFFSWFSQ---HSLPEA--DRVAQIIKDDLW 318 Query: 409 PNPLKYF 389 PNPL+Y+ Sbjct: 319 PNPLQYY 325
>TSYL4_HUMAN (Q9UJ04) Testis-specific Y-encoded-like protein 4 (TSPY-like 4)| Length = 414 Score = 47.4 bits (111), Expect = 3e-05 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Frame = -1 Query: 589 ATSIKWKEGMEINGNAIK-KKGSKRPLVEESFFTWFTDTEHKSLADGVQDEVAEIIKEDL 413 +T I+W G + + + ++G+ P SFF WF+D H L D +AEIIK +L Sbjct: 327 STPIRWHRGQDPQAHIHRNREGNTIP----SFFNWFSD--HSLLEF---DRIAEIIKGEL 377 Query: 412 WPNPLKYF 389 WPNPL+Y+ Sbjct: 378 WPNPLQYY 385
>TSYL4_MOUSE (Q8VD63) Testis-specific Y-encoded-like protein 4 (TSPY-like 4)| Length = 406 Score = 45.4 bits (106), Expect = 1e-04 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Frame = -1 Query: 589 ATSIKWKEGMEINGNAIK-KKGSKRPLVEESFFTWFTDTEHKSLADGVQDEVAEIIKEDL 413 +T I+W G E + + ++G+ P SFF WF+D H L D +AEIIK +L Sbjct: 319 STPIRWHRGQEPQAHIHRNREGNTIP----SFFNWFSD--HSLLEF---DRIAEIIKGEL 369 Query: 412 WPNPLKYF 389 W NPL+Y+ Sbjct: 370 WSNPLQYY 377
>ASP_PLAFS (P13825) Aspartic acid-rich protein precursor| Length = 253 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = -1 Query: 586 TSIKWKEGME-INGNAIKKKGSKRPLVEESFFTWFTDTEHKSLADGVQDEVAEIIKEDLW 410 T IKWKEG I + + + S F WFT E + D V E+I+ ++W Sbjct: 139 TRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEWFTTDELQDKPD-----VGELIRREIW 193 Query: 409 PNPLKYF 389 NPL Y+ Sbjct: 194 HNPLSYY 200
>TSPY1_HUMAN (Q01534) Testis-specific Y-encoded protein 1| Length = 308 Score = 38.5 bits (88), Expect = 0.015 Identities = 21/68 (30%), Positives = 37/68 (54%) Frame = -1 Query: 592 NATSIKWKEGMEINGNAIKKKGSKRPLVEESFFTWFTDTEHKSLADGVQDEVAEIIKEDL 413 ++T I+W E+ A +++ L +FF WF+D +++AEI+ +DL Sbjct: 231 HSTPIEWYPDYEVE--AYRRRHHNSSL---NFFNWFSDHNFAG-----SNKIAEILCKDL 280 Query: 412 WPNPLKYF 389 W NPL+Y+ Sbjct: 281 WRNPLQYY 288
>SPR2_CAEEL (Q18240) Suppressor of presenilin 2| Length = 312 Score = 38.5 bits (88), Expect = 0.015 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Frame = -1 Query: 586 TSIKWKEGMEINGNAIKKKGSKRPLVEE-----SFFTWFTDTEHKSLADGVQDEVAEIIK 422 T I+WKE K P E+ +F W T + +L D DE+AE+IK Sbjct: 154 TEIEWKEN------------KKPPFPEDGDSAHTFLEWLT---YAALPDS--DEIAEVIK 196 Query: 421 EDLWPNPLKYF 389 +DL+ NPL+Y+ Sbjct: 197 DDLYVNPLQYY 207
>TSPY1_RAT (Q9R1M3) Testis-specific Y-encoded protein 1 (rTSPY)| Length = 334 Score = 34.7 bits (78), Expect = 0.21 Identities = 17/38 (44%), Positives = 22/38 (57%) Frame = -1 Query: 502 SFFTWFTDTEHKSLADGVQDEVAEIIKEDLWPNPLKYF 389 +FF W HK + +AEII +DLWPNPL Y+ Sbjct: 296 TFFNWLC--AHKFPGS---NRIAEIIMDDLWPNPLYYY 328
>TSPY1_BOVIN (O19110) Testis-specific Y-encoded protein 1 (bTSPY)| Length = 317 Score = 31.6 bits (70), Expect = 1.8 Identities = 11/19 (57%), Positives = 16/19 (84%) Frame = -1 Query: 445 DEVAEIIKEDLWPNPLKYF 389 + +AEII ED+W +PLKY+ Sbjct: 288 NRIAEIISEDVWDDPLKYY 306
>METK_PROMP (Q7V2Y8) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 413 Score = 29.3 bits (64), Expect = 8.9 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = -1 Query: 511 VEESFFTWFTDTEHKSLADGV--QDEVAEIIKEDLWPN 404 V S T T+H + DG+ ++E+ + IKEDLW N Sbjct: 184 VPVSINTILISTQHTAEIDGITNEEEIRQKIKEDLWIN 221 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,976,131 Number of Sequences: 219361 Number of extensions: 1145357 Number of successful extensions: 2700 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2638 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2694 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
