>UBP21_SCHPO (Q9UTT1) Ubiquitin carboxyl-terminal hydrolase 21 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 21) (Ubiquitin-specific
            processing protease 21) (Deubiquitinating enzyme 21)
          Length = 1129

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
 Frame = -1

Query: 630  YGVPFFFLIREGEALSDIKLRIQKKFEVPDEQFLKWKFAYV---AYNRPDYLQDSDIVLS 460
            + +PF+F++  GE L D+K R+QK+    D QF K K A +   ++ +P YL D D VL 
Sbjct: 1037 HDIPFYFVLLRGETLKDLKKRLQKRLGYNDTQFSKVKLAVLQAQSFGKPYYLTDDDEVL- 1095

Query: 459  RFQQKNIYGAWEQS---LGLEH 403
                   YG  E     LGL+H
Sbjct: 1096 -------YGELEPQSHILGLDH 1110

>UBP7_HUMAN (Q93009) Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 7) (Ubiquitin-specific-processing
            protease 7) (Deubiquitinating enzyme 7)
            (Herpesvirus-associated ubiquitin-specific protease)
          Length = 1102

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
 Frame = -1

Query: 630  YGVPFFFLIREGEALSDIKLRIQKKFEVPDEQFLKWKFAYVAYNRPDYLQDS--DIVLSR 457
            +G+PF   I +GE   ++  RIQ   ++ +++F K+KFA V   R  Y+ +   ++ L  
Sbjct: 1003 FGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMTGRHQYINEDEYEVNLKD 1062

Query: 456  FQ-QKNIYGAWEQSLGLEHSDMPSKKPYMANQNRHSF-EKPVKIYN 325
            F+ Q          LGL+H +   K+      +R+++ EK +KI+N
Sbjct: 1063 FEPQPGNMSHPRPWLGLDHFNKAPKR------SRYTYLEKAIKIHN 1102

>UBP5_SCHPO (Q09879) Probable ubiquitin carboxyl-terminal hydrolase 5 (EC|
            3.1.2.15) (Ubiquitin thioesterase 5) (Ubiquitin-specific
            processing protease 5) (Deubiquitinating enzyme 5)
          Length = 1108

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = -1

Query: 630  YGVPFFFLIREGEALSDIKLRIQKKFEVPDEQFLKWKFAYVAY--NRPDYLQDSDIVLSR 457
            +G+PF F+I+  E   D KLR+  + + P+  F   KF  V +  NR  YL D DI    
Sbjct: 1018 HGIPFSFVIKPQEKFIDTKLRLAARTQYPESIFSVIKFCVVDFDNNRVVYLNDEDITYDV 1077

Query: 456  FQQKNIYGAWEQSLGLEHSDMPSKKP 379
             ++ N       +L L+ +   SKKP
Sbjct: 1078 VEKLN------GTLALDRAKKDSKKP 1097

>MURC_LACPL (Q88WZ5) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 436

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = -1

Query: 510 VAYNRPDYLQDSDIVLSRFQQ------KNIYGAWEQSLGLEHSDMPSKKPYMANQNRHSF 349
           V ++ PDY +D   V S FQQ      K I+ AW     L H D+ +   Y    +R  F
Sbjct: 174 VDFDHPDYYKDLADVQSAFQQFGNQVKKGIF-AWGDDESLRHLDVDTPIYYYGTNDRDDF 232

Query: 348 E 346
           +
Sbjct: 233 Q 233

>CO6_RAT (Q811M5) Complement component C6 precursor|
          Length = 934

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
 Frame = +3

Query: 258 QCYSCPFVSRNHQVGTENITIFSCRS----------SPAFQKNG-DSGWPCMVFWRACLS 404
           QC  CP   R    GTE + +  C+S          SP ++ N  D  W C   W AC +
Sbjct: 522 QCAPCPNNGRPRLSGTECLCV--CQSGTYGENCEKRSPDYKSNAVDGNWGCWSSWSACNA 579

Query: 405 A 407
           A
Sbjct: 580 A 580

>Y116_MYCGE (P47362) Hypothetical protein MG116|
          Length = 251

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 23/76 (30%), Positives = 33/76 (43%)
 Frame = -1

Query: 633 YYGVPFFFLIREGEALSDIKLRIQKKFEVPDEQFLKWKFAYVAYNRPDYLQDSDIVLSRF 454
           YY    F LI     L+ IK  ++  +E       K   A + YN      ++D+V S  
Sbjct: 113 YYDSCCFILIEANRPLTAIKT-VKSVYE--KALIEKAAIAVLPYNGTLMNGNNDVVFSHL 169

Query: 453 QQKNIYGAWEQSLGLE 406
           Q KN +  W+QS   E
Sbjct: 170 QDKNRFNYWKQSKAYE 185

>RFCL_METMP (Q6M0E9) Replication factor C large subunit (RFC large subunit)|
           (Clamp loader large subunit)
          Length = 486

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 540 EQFLKWKFAYVAYNRPDYLQDSDIVLSRFQQKNIYGAWEQSLGL 409
           +++LK+K     Y   DYL  SD+ L R  ++  +G W  +  L
Sbjct: 268 KEYLKYKDLAEGY---DYLSKSDVFLGRVYRRQYFGLWRYASAL 308


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,682,881
Number of Sequences: 219361
Number of extensions: 2127145
Number of successful extensions: 4878
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4877
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)