ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22m15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OLFL3_MOUSE (Q8BK62) Olfactomedin-like protein 3 precursor 31 3.0
2OLFL3_HUMAN (Q9NRN5) Olfactomedin-like protein 3 precursor (HNOE... 31 3.9
3SYFB_ACIAD (Q6F873) Phenylalanyl-tRNA synthetase beta chain (EC ... 30 5.1
4HMDH_METJA (Q58116) 3-hydroxy-3-methylglutaryl-coenzyme A reduct... 30 6.7
5SURE_WOLTR (Q5GS87) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleosid... 30 6.7
6TDRD4_HUMAN (Q9NUY9) Tudor domain-containing protein 4 30 6.7
7ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hyp... 30 8.7

>OLFL3_MOUSE (Q8BK62) Olfactomedin-like protein 3 precursor|
          Length = 406

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -2

Query: 629 ALSARKGSRLSVTLPNVSTNALGYGAFL 546
           A++ARK SR+ V  P V T  L YG FL
Sbjct: 192 AMAARKASRIRVPFPWVGTGQLVYGGFL 219



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>OLFL3_HUMAN (Q9NRN5) Olfactomedin-like protein 3 precursor (HNOEL-iso) (hOLF44)|
          Length = 406

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -2

Query: 629 ALSARKGSRLSVTLPNVSTNALGYGAFL 546
           A++ARK SR+ V  P V T  L YG FL
Sbjct: 192 AMAARKASRVRVPFPWVGTGQLVYGGFL 219



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>SYFB_ACIAD (Q6F873) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 793

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
 Frame = -3

Query: 343 PDQWRLLLRRINKSQGGLYPRMQLCQALVFLASSRVGMGHSCPS-----PGERKLSARKL 179
           PD  RL +  +N   G   P   +C A     + RVGM     +     PGE K+   KL
Sbjct: 57  PDADRLRVTTVNIGNGE--PLQIVCGA----PNLRVGMKAPVATIGAVLPGEFKIKKGKL 110

Query: 178 HQVEISGFACGAGTILLQ 125
             +E  G  CGA  I L+
Sbjct: 111 RGIESQGMLCGASEIDLE 128



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>HMDH_METJA (Q58116) 3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC|
           1.1.1.34) (HMG-CoA reductase)
          Length = 405

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -2

Query: 665 VVAGSIQGGLSKALSARKGSRLSVTLPNVSTNALGYGAFLGLYANLRYQLLCGLDQYTIK 486
           +V GS+  G++ A     G   SVTLP+V    +G G  +         L C  D   +K
Sbjct: 314 IVEGSL--GITMAEVEDDGLYFSVTLPDVPIGTVGGGTRVETQKECLEMLGCYGDNKALK 371

Query: 485 RFDVLGMAIFIG 450
             +++G A+  G
Sbjct: 372 FAEIVGAAVLAG 383



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>SURE_WOLTR (Q5GS87) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside|
           5'-monophosphate phosphohydrolase)
          Length = 250

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -1

Query: 504 RSIYDQAL*CSWHGNLHWYNTKI 436
           RSI   AL  ++HG ++WYNTKI
Sbjct: 118 RSIPSIALSQAYHGGINWYNTKI 140



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>TDRD4_HUMAN (Q9NUY9) Tudor domain-containing protein 4|
          Length = 633

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
 Frame = +3

Query: 120 WN*SKIVPAPQANPLIST*CNFLADNFLSPG------LGQLCPMPTLLDAKKTKA*HNCI 281
           W  +KIV   + NPL       +   F+  G      L +LC +P+ L     +A    +
Sbjct: 505 WYRAKIVAIKEFNPLS------ILVQFVDYGSTAKLTLNRLCQIPSHLMRYPARAIKVLL 558

Query: 282 LGYKPP*LLLIRRSSNLHWSGVCPKQSIRALW 377
            G+KPP      R         CPK S+ ALW
Sbjct: 559 AGFKPP-----LRDLGETRIPYCPKWSMEALW 585



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>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 352 LSNRSEHCGSASSPSHARLDDSPI*IFINLSVVPMKIAMP 471
           +S+ S H G  ++ +HA  ++SP  IF N    P +  +P
Sbjct: 240 ISSDSMHIGVLAAAAHANANNSPFTIFYNPRAAPAEFVVP 279


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,774,904
Number of Sequences: 219361
Number of extensions: 2016080
Number of successful extensions: 4732
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4731
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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