ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22m14 |
|---|---|
| Clone Library Name | barley_pub |
>NUOF1_RHIME (P56912) NADH-quinone oxidoreductase chain F 1 (EC 1.6.99.5) (NADH| dehydrogenase I, chain F 1) (NDH-1, chain F 1) Length = 434 Score = 74.7 bits (182), Expect = 5e-14 Identities = 31/36 (86%), Positives = 36/36 (100%) Frame = -1 Query: 403 VTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI 296 VTKQ+EGHTICALGDAAAWP+QGLI+HFRPE+E+RI Sbjct: 381 VTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEKRI 416
>NUBM_ASPNG (Q92406) NADH-ubiquinone oxidoreductase 51 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-51KD) (CI-51KD) Length = 496 Score = 73.2 bits (178), Expect = 1e-13 Identities = 31/38 (81%), Positives = 36/38 (94%) Frame = -1 Query: 403 VTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRD 290 +TKQ+EGHTICALG+A AWP+QGLIRHFRPELE RIR+ Sbjct: 429 LTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIRE 466
>NUBM_BOVIN (P25708) NADH-ubiquinone oxidoreductase 51 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-51KD) (CI-51KD) (NADH dehydrogenase flavoprotein 1) Length = 464 Score = 73.2 bits (178), Expect = 1e-13 Identities = 32/42 (76%), Positives = 37/42 (88%) Frame = -1 Query: 403 VTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRDRADR 278 ++KQIEGHTICALGD AAWPVQGLIRHFRPELE R++ A + Sbjct: 415 ISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQQFAQQ 456
>NUBM_NEUCR (P24917) NADH-ubiquinone oxidoreductase 51 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-51KD) (CI-51KD) Length = 493 Score = 72.4 bits (176), Expect = 2e-13 Identities = 31/37 (83%), Positives = 35/37 (94%) Frame = -1 Query: 403 VTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIR 293 +TKQ+EGHTICALG+A AWP+QGLIRHFRPELE RIR Sbjct: 427 LTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 463
>NUBM_MACFA (Q8HXQ9) NADH-ubiquinone oxidoreductase 51 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-51KD) (CI-51KD) (NADH dehydrogenase flavoprotein 1) Length = 464 Score = 72.4 bits (176), Expect = 2e-13 Identities = 31/37 (83%), Positives = 35/37 (94%) Frame = -1 Query: 403 VTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIR 293 ++KQIEGHTICALGD AAWPVQGLIRHFRPELE R++ Sbjct: 415 ISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQ 451
>NUBM_HUMAN (P49821) NADH-ubiquinone oxidoreductase 51 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-51KD) (CI-51KD) (NADH dehydrogenase flavoprotein 1) Length = 464 Score = 72.4 bits (176), Expect = 2e-13 Identities = 31/37 (83%), Positives = 35/37 (94%) Frame = -1 Query: 403 VTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIR 293 ++KQIEGHTICALGD AAWPVQGLIRHFRPELE R++ Sbjct: 415 ISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQ 451
>NUOF_RICPR (Q9ZE33) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH| dehydrogenase I, chain F) (NDH-1, chain F) Length = 421 Score = 72.4 bits (176), Expect = 2e-13 Identities = 31/37 (83%), Positives = 36/37 (97%) Frame = -1 Query: 403 VTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIR 293 VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E+RI+ Sbjct: 380 VTKEIEGHTICALGDAAAWPIQGLIRHFRDEIEQRIK 416
>NUOF_RHOCA (O07948) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH| dehydrogenase I, chain F) (NDH-1, chain F) Length = 431 Score = 72.0 bits (175), Expect = 3e-13 Identities = 31/39 (79%), Positives = 36/39 (92%) Frame = -1 Query: 403 VTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRDR 287 VTKQ+EGHTICALGDAAAWP+QGLIRH+R E+E RI+ R Sbjct: 382 VTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRIKAR 420
>NUBM_MOUSE (Q91YT0) NADH-ubiquinone oxidoreductase 51 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-51KD) (CI-51KD) (NADH dehydrogenase flavoprotein 1) Length = 464 Score = 71.6 bits (174), Expect = 4e-13 Identities = 31/37 (83%), Positives = 35/37 (94%) Frame = -1 Query: 403 VTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIR 293 ++KQIEGHTICALGD AAWPVQGLIRHFRPELE R++ Sbjct: 415 ISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMQ 451
>NUOF_RICCN (Q92JB2) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH| dehydrogenase I, chain F) (NDH-1, chain F) Length = 421 Score = 71.6 bits (174), Expect = 4e-13 Identities = 31/37 (83%), Positives = 35/37 (94%) Frame = -1 Query: 403 VTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIR 293 VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E RI+ Sbjct: 380 VTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIK 416
>NQO1_PARDE (P29913) NADH-quinone oxidoreductase chain 1 (EC 1.6.99.5) (NADH| dehydrogenase I, chain 1) (NDH-1, chain 1) Length = 431 Score = 69.3 bits (168), Expect = 2e-12 Identities = 30/37 (81%), Positives = 35/37 (94%) Frame = -1 Query: 403 VTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIR 293 VTKQ+EGHTICALGDAAAWP+QGLIR+FR E+E RI+ Sbjct: 382 VTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIK 418
>NQO1_THET8 (Q56222) NADH-quinone oxidoreductase subunit 1 (EC 1.6.99.5) (NADH| dehydrogenase I chain 1) (NDH-1 subunit 1) Length = 438 Score = 40.8 bits (94), Expect = 8e-04 Identities = 16/35 (45%), Positives = 23/35 (65%) Frame = -1 Query: 391 IEGHTICALGDAAAWPVQGLIRHFRPELERRIRDR 287 IEG + C L DAA WPV+G +RHF+ + R++ Sbjct: 394 IEGRSFCPLADAAVWPVKGSLRHFKDQYLALAREK 428
>NUOF2_RHIME (P56913) NADH-quinone oxidoreductase chain F 2 (EC 1.6.99.5) (NADH| dehydrogenase I, chain F 2) (NDH-1, chain F 2) Length = 421 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = -1 Query: 397 KQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRDR 287 K I G+T CALGD AA ++ ++HFR E I +R Sbjct: 380 KGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEER 416
>NUOF_STRCO (Q9XAQ9) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH| dehydrogenase I, chain F) (NDH-1, chain F) Length = 449 Score = 36.6 bits (83), Expect = 0.015 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -1 Query: 403 VTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRDR 287 + I G + CALGD AA P+ +++FR E E I R Sbjct: 391 IADNINGKSFCALGDGAASPIFSSLKYFREEYEEHITGR 429
>NUOF_MYCTU (P65567) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH| dehydrogenase I, chain F) (NDH-1, chain F) Length = 445 Score = 36.2 bits (82), Expect = 0.019 Identities = 16/31 (51%), Positives = 20/31 (64%) Frame = -1 Query: 403 VTKQIEGHTICALGDAAAWPVQGLIRHFRPE 311 ++ I G + CALGD AA PV I+HFR E Sbjct: 389 ISDSILGKSFCALGDGAASPVMSSIKHFRDE 419
>NUOF_MYCBO (P65568) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH| dehydrogenase I, chain F) (NDH-1, chain F) Length = 445 Score = 36.2 bits (82), Expect = 0.019 Identities = 16/31 (51%), Positives = 20/31 (64%) Frame = -1 Query: 403 VTKQIEGHTICALGDAAAWPVQGLIRHFRPE 311 ++ I G + CALGD AA PV I+HFR E Sbjct: 389 ISDSILGKSFCALGDGAASPVMSSIKHFRDE 419
>L2GL2_BRARE (Q7SZE3) Lethal(2) giant larvae protein homolog 2 (Protein penner)| Length = 1020 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +2 Query: 167 VSYICMCRNELHQFALFL*IKSANKKWCLCRSCHQQLPIST--------IADPPLQLRSE 322 V Y C+ R ++ A + K + + S ++ +ST + +PPLQ+RS+ Sbjct: 881 VHYPCIRREDVSGIASCVFTKYGQGFYLISPSEFERFSLSTRWVVQPHCLVEPPLQMRSK 940 Query: 323 VPDKTLHRPCCSIPEG 370 P +HR +P+G Sbjct: 941 SPSSPVHR---DLPDG 953
>NUOF_SALTY (P33901) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH| dehydrogenase I, chain F) (NDH-1, chain F) Length = 445 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -1 Query: 385 GHTICALGDAAAWPVQGLIRHFRPELERRIR 293 G T CA A P+Q I++FR E E I+ Sbjct: 394 GKTFCAHAPGAVEPLQSAIKYFREEFEAGIK 424
>NUOF_ECOLI (P31979) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH| dehydrogenase I, chain F) (NDH-1, chain F) (NUO6) Length = 445 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -1 Query: 385 GHTICALGDAAAWPVQGLIRHFRPELERRIR 293 G T CA A P+Q I++FR E E I+ Sbjct: 394 GKTFCAHAPGAVEPLQSAIKYFREEFEAGIK 424
>NUOF_BUCAI (P57256) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH| dehydrogenase I, chain F) (NDH-1, chain F) Length = 444 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -1 Query: 385 GHTICALGDAAAWPVQGLIRHFRPELERRIRDR 287 G T CA A P+Q I++FR E E I R Sbjct: 396 GKTFCAHAPGAIEPLQSAIKYFRSEFESGINIR 428
>Y1473_CAUCR (P58113) Hypothetical protein CC1473| Length = 232 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -2 Query: 252 KHHFLFADFIHRNNANW 202 KHHF FA + NN NW Sbjct: 21 KHHFSFASYYDPNNMNW 37
>DKK4_HUMAN (Q9UBT3) Dickkopf-related protein 4 precursor (Dkk-4) (Dickkopf-4)| (hDkk-4) [Contains: Dickkopf-related protein 4 short form] Length = 224 Score = 28.1 bits (61), Expect = 5.2 Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Frame = -3 Query: 278 GAADGSFCISTTSCLLILFTEIMQTGEAHFC-TCRCSLPYWLNLLCRCLFDALMKP-VYF 105 GA GS C+S T C F + E FC TCR L RC DA+ P Sbjct: 34 GARKGSQCLSDTDCNTRKFC-LQPRDEKPFCATCR-------GLRRRCQRDAMCCPGTLC 85 Query: 104 DGEVETNMKDCT 69 +V T M+D T Sbjct: 86 VNDVCTTMEDAT 97
>NUOF_BUCAP (Q8K9Y3) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH| dehydrogenase I, chain F) (NDH-1, chain F) Length = 447 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -1 Query: 385 GHTICALGDAAAWPVQGLIRHFRPELERRI 296 G T CA A P+Q I++FR E E I Sbjct: 395 GKTFCAHAPGAVEPLQSAIKYFRLEFEAGI 424 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,024,208 Number of Sequences: 219361 Number of extensions: 1126087 Number of successful extensions: 2477 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2429 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2477 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
