| Clone Name | rbags23b08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475760.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 633 Score = 123 bits (62), Expect = 8e-25 Identities = 140/166 (84%) Strand = Plus / Minus Query: 502 cttccgaatgcatcacgaagctcggaaacgccgtcgtaatgtcctgaagatagggcagtg 561 |||| |||||||| || |||||||| |||||| | ||||||||||| | |||||| |||| Sbjct: 622 cttctgaatgcattacaaagctcgggaacgccatggtaatgtcctgcaaatagggaagtg 563 Query: 562 acatgttcctgagcgatgctgggttcttcttgacgaactcctcccactccttggggtcta 621 |||||||||| || ||||| |||||| ||| || || || ||||| |||| ||||||| Sbjct: 562 acatgttccttagtgatgccgggttcgccttaacaaattcttcccattcctcagggtcta 503 Query: 622 tcctgtcatcgccattcgagtctgcttgactgaacgtattgtcgac 667 ||||| |||| ||||| ||||||||||||||||| ||||| ||||| Sbjct: 502 tcctgccatctccatttgagtctgcttgactgaatgtattatcgac 457
>gb|DQ201198.1| Oryza sativa (japonica cultivar-group) calcineurin B-like protein 4 (CBL4) mRNA, complete cds Length = 633 Score = 123 bits (62), Expect = 8e-25 Identities = 140/166 (84%) Strand = Plus / Minus Query: 502 cttccgaatgcatcacgaagctcggaaacgccgtcgtaatgtcctgaagatagggcagtg 561 |||| |||||||| || |||||||| |||||| | ||||||||||| | |||||| |||| Sbjct: 622 cttctgaatgcattacaaagctcgggaacgccatggtaatgtcctgcaaatagggaagtg 563 Query: 562 acatgttcctgagcgatgctgggttcttcttgacgaactcctcccactccttggggtcta 621 |||||||||| || ||||| |||||| ||| || || || ||||| |||| ||||||| Sbjct: 562 acatgttccttagtgatgccgggttcgccttaacaaattcttcccattcctcagggtcta 503 Query: 622 tcctgtcatcgccattcgagtctgcttgactgaacgtattgtcgac 667 ||||| |||| ||||| ||||||||||||||||| ||||| ||||| Sbjct: 502 tcctgccatctccatttgagtctgcttgactgaatgtattatcgac 457
>dbj|AK101368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035L13, full insert sequence Length = 1092 Score = 123 bits (62), Expect = 8e-25 Identities = 140/166 (84%) Strand = Plus / Minus Query: 502 cttccgaatgcatcacgaagctcggaaacgccgtcgtaatgtcctgaagatagggcagtg 561 |||| |||||||| || |||||||| |||||| | ||||||||||| | |||||| |||| Sbjct: 687 cttctgaatgcattacaaagctcgggaacgccatggtaatgtcctgcaaatagggaagtg 628 Query: 562 acatgttcctgagcgatgctgggttcttcttgacgaactcctcccactccttggggtcta 621 |||||||||| || ||||| |||||| ||| || || || ||||| |||| ||||||| Sbjct: 627 acatgttccttagtgatgccgggttcgccttaacaaattcttcccattcctcagggtcta 568 Query: 622 tcctgtcatcgccattcgagtctgcttgactgaacgtattgtcgac 667 ||||| |||| ||||| ||||||||||||||||| ||||| ||||| Sbjct: 567 tcctgccatctccatttgagtctgcttgactgaatgtattatcgac 522
>gb|DQ248965.1| Brassica juncea calcium sensing protein mRNA, complete cds Length = 633 Score = 123 bits (62), Expect = 8e-25 Identities = 140/166 (84%) Strand = Plus / Minus Query: 502 cttccgaatgcatcacgaagctcggaaacgccgtcgtaatgtcctgaagatagggcagtg 561 |||| |||||||| || |||||||| |||||| | ||||||||||| | |||||| |||| Sbjct: 622 cttctgaatgcattacaaagctcgggaacgccatggtaatgtcctgcaaatagggaagtg 563 Query: 562 acatgttcctgagcgatgctgggttcttcttgacgaactcctcccactccttggggtcta 621 |||||||||| || ||||| |||||| ||| || || || ||||| |||| ||||||| Sbjct: 562 acatgttccttagtgatgccgggttcgccttaacaaattcttcccattcctcagggtcta 503 Query: 622 tcctgtcatcgccattcgagtctgcttgactgaacgtattgtcgac 667 ||||| |||| ||||| ||||||||||||||||| ||||| ||||| Sbjct: 502 tcctgccatctccatttgagtctgcttgactgaatgtattatcgac 457
>gb|DQ248964.1| Oryza sativa (indica cultivar-group) calcium sensing protein mRNA, complete cds Length = 633 Score = 123 bits (62), Expect = 8e-25 Identities = 140/166 (84%) Strand = Plus / Minus Query: 502 cttccgaatgcatcacgaagctcggaaacgccgtcgtaatgtcctgaagatagggcagtg 561 |||| |||||||| || |||||||| |||||| | ||||||||||| | |||||| |||| Sbjct: 622 cttctgaatgcattacaaagctcgggaacgccatggtaatgtcctgcaaatagggaagtg 563 Query: 562 acatgttcctgagcgatgctgggttcttcttgacgaactcctcccactccttggggtcta 621 |||||||||| || ||||| |||||| ||| || || || ||||| |||| ||||||| Sbjct: 562 acatgttccttagtgatgccgggttcgccttaacaaattcttcccattcctcagggtcta 503 Query: 622 tcctgtcatcgccattcgagtctgcttgactgaacgtattgtcgac 667 ||||| |||| ||||| ||||||||||||||||| ||||| ||||| Sbjct: 502 tcctgccatctccatttgagtctgcttgactgaatgtattatcgac 457
>gb|BT018770.1| Zea mays clone EL01N0525C10.d mRNA sequence Length = 1417 Score = 109 bits (55), Expect = 1e-20 Identities = 157/191 (82%) Strand = Plus / Minus Query: 518 gaagctcggaaacgccgtcgtaatgtcctgaagatagggcagtgacatgttcctgagcga 577 |||||||||||| | | | || |||||||| |||||||| || | ||||||||| | || Sbjct: 768 gaagctcggaaatgacatggtgatgtcctgcagataggggagagtcatgttccttaacgt 709 Query: 578 tgctgggttcttcttgacgaactcctcccactccttggggtctatcctgtcatcgccatt 637 ||| ||||||||||| |||||||||||||| || | || ||||||||| |||| || || Sbjct: 708 tgccgggttcttcttcacgaactcctcccattcttcaggatctatcctgccatctccgtt 649 Query: 638 cgagtctgcttgactgaacgtattgtcgacgatctcctcaacggcgctatcggagaggca 697 |||||| ||||| |||||||| || ||||||||| ||| |||| ||| || || ||||| Sbjct: 648 cgagtccgcttggctgaacgtgttatcgacgatcgtctcgacggtgctgtctgaaaggca 589 Query: 698 caggtcggact 708 |||||||||| Sbjct: 588 gaggtcggact 578
>gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E05, complete sequence Length = 196284 Score = 81.8 bits (41), Expect = 3e-12 Identities = 89/105 (84%) Strand = Plus / Minus Query: 551 atagggcagtgacatgttcctgagcgatgctgggttcttcttgacgaactcctcccactc 610 |||||| |||||||||||||| || ||||| |||||| ||| || || || ||||| || Sbjct: 181584 atagggaagtgacatgttccttagtgatgccgggttcgccttaacaaattcttcccattc 181525 Query: 611 cttggggtctatcctgtcatcgccattcgagtctgcttgactgaa 655 || |||||||||||| |||| ||||| ||||||||||||||||| Sbjct: 181524 ctcagggtctatcctgccatctccatttgagtctgcttgactgaa 181480
>gb|AC097111.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1014_C08, complete sequence Length = 95638 Score = 81.8 bits (41), Expect = 3e-12 Identities = 89/105 (84%) Strand = Plus / Minus Query: 551 atagggcagtgacatgttcctgagcgatgctgggttcttcttgacgaactcctcccactc 610 |||||| |||||||||||||| || ||||| |||||| ||| || || || ||||| || Sbjct: 27889 atagggaagtgacatgttccttagtgatgccgggttcgccttaacaaattcttcccattc 27830 Query: 611 cttggggtctatcctgtcatcgccattcgagtctgcttgactgaa 655 || |||||||||||| |||| ||||| ||||||||||||||||| Sbjct: 27829 ctcagggtctatcctgccatctccatttgagtctgcttgactgaa 27785
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 81.8 bits (41), Expect = 3e-12 Identities = 89/105 (84%) Strand = Plus / Minus Query: 551 atagggcagtgacatgttcctgagcgatgctgggttcttcttgacgaactcctcccactc 610 |||||| |||||||||||||| || ||||| |||||| ||| || || || ||||| || Sbjct: 26330536 atagggaagtgacatgttccttagtgatgccgggttcgccttaacaaattcttcccattc 26330477 Query: 611 cttggggtctatcctgtcatcgccattcgagtctgcttgactgaa 655 || |||||||||||| |||| ||||| ||||||||||||||||| Sbjct: 26330476 ctcagggtctatcctgccatctccatttgagtctgcttgactgaa 26330432
>ref|XM_652420.1| Entamoeba histolytica HM-1:IMSS protein kinase (1.t00127) partial mRNA Length = 1404 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 gaagcaactaaagaaacaaca 105 ||||||||||||||||||||| Sbjct: 128 gaagcaactaaagaaacaaca 108
>emb|CR762472.6| Zebrafish DNA sequence from clone DKEY-75G19 in linkage group 1, complete sequence Length = 176472 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 aaggcaagttattatttgctg 482 ||||||||||||||||||||| Sbjct: 140105 aaggcaagttattatttgctg 140125
>emb|CR388176.8| Zebrafish DNA sequence from clone DKEY-109D19 in linkage group 21, complete sequence Length = 159175 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 462 aaggcaagttattatttgctg 482 ||||||||||||||||||||| Sbjct: 11819 aaggcaagttattatttgctg 11799
>gb|AC011286.7| Homo sapiens BAC clone RP11-4H21 from 2, complete sequence Length = 168863 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 89 caactaaagaaacaacatacatcct 113 ||||| ||||||||||||||||||| Sbjct: 154246 caacttaagaaacaacatacatcct 154222
>emb|BX119983.4| Zebrafish DNA sequence from clone CH211-198G9 in linkage group 1, complete sequence Length = 172227 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 462 aaggcaagttattatttgctg 482 ||||||||||||||||||||| Sbjct: 64996 aaggcaagttattatttgctg 64976
>gb|AY870660.1| Entamoeba histolytica p21-activated kinase mRNA, complete cds Length = 1404 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 gaagcaactaaagaaacaaca 105 ||||||||||||||||||||| Sbjct: 128 gaagcaactaaagaaacaaca 108
>gb|AC107452.10| Mus musculus chromosome 15, clone RP23-236C21, complete sequence Length = 180069 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 taacagtgcccaacagccaa 193 |||||||||||||||||||| Sbjct: 149701 taacagtgcccaacagccaa 149682
>gb|AC116808.10| Mus musculus chromosome 15, clone RP24-351J19, complete sequence Length = 164398 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 taacagtgcccaacagccaa 193 |||||||||||||||||||| Sbjct: 13145 taacagtgcccaacagccaa 13126
>gb|AC068664.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-376O11, complete sequence Length = 94429 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 573 agcgatgctgggttcttctt 592 |||||||||||||||||||| Sbjct: 89378 agcgatgctgggttcttctt 89397
>gb|AC124412.3| Mus musculus BAC clone RP24-274J3 from chromosome 9, complete sequence Length = 175945 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gtaacagtgcccaacagcca 192 |||||||||||||||||||| Sbjct: 32002 gtaacagtgcccaacagcca 32021
>gb|AC121778.1| Mus musculus BAC clone RP23-359J6 from 1, complete sequence Length = 205069 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 323 atctggtcatcgtctcaagctcac 346 ||||||||||| |||||||||||| Sbjct: 86238 atctggtcatcctctcaagctcac 86261
>gb|AC113106.9| Mus musculus chromosome 9, clone RP23-325C1, complete sequence Length = 191609 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gtaacagtgcccaacagcca 192 |||||||||||||||||||| Sbjct: 106411 gtaacagtgcccaacagcca 106430
>emb|AL513475.13| Human DNA sequence from clone RP11-277I20 on chromosome 6 Contains part of the UTRN gene for utrophin (homologous to dystrophin) (DRP, DRP1, DMDL), a novel pseudogene similar to hypothetical protein HT023 and a novel pseudogene, complete sequence Length = 191752 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 598 actcctcccactccttgggg 617 |||||||||||||||||||| Sbjct: 148135 actcctcccactccttgggg 148116
>gb|AC026250.16| Homo sapiens chromosome 11, clone RP11-540A21, complete sequence Length = 160681 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 aactaaagaaacaacataca 109 |||||||||||||||||||| Sbjct: 8423 aactaaagaaacaacataca 8404
>gb|DQ270917.1| Mustela vison clone VII517I microsatellite sequence Length = 818 Score = 40.1 bits (20), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 21 ggaaggaagagnaatacatcata 43 ||||||||||| ||||||||||| Sbjct: 138 ggaaggaagagaaatacatcata 116
>gb|AC011092.4| Homo sapiens, clone RP11-1H15, complete sequence Length = 192318 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 aactaaagaaacaacataca 109 |||||||||||||||||||| Sbjct: 191413 aactaaagaaacaacataca 191394
>gb|AC103552.1| Homo sapiens chromosome 1 clone RP11-442N6, complete sequence Length = 160837 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tcctctggcattttaccata 129 |||||||||||||||||||| Sbjct: 15496 tcctctggcattttaccata 15477
>emb|BX649547.7| Zebrafish DNA sequence from clone DKEY-19E10 in linkage group 3, complete sequence Length = 237569 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 aagcaactaaagaaacaaca 105 |||||||||||||||||||| Sbjct: 137163 aagcaactaaagaaacaaca 137182
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 594 acgaactcctcccactcctt 613 |||||||||||||||||||| Sbjct: 190417 acgaactcctcccactcctt 190398
>dbj|AB103463.1| Streptomyces sp. AM-7161 medermycin biosynthetic gene cluster (med-ORF1 - 30) and ORF P - Z , partial and complete cds Length = 36202 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 587 cttcttgacgaactcctcccactccttg 614 ||||| ||||| |||||||||||||||| Sbjct: 4503 cttctcgacgatctcctcccactccttg 4530
>gb|AC007338.6| Homo sapiens chromosome 16 clone RP11-283C7, complete sequence Length = 185281 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 aacagccaaaatgaccaaaa 204 |||||||||||||||||||| Sbjct: 152771 aacagccaaaatgaccaaaa 152752
>gb|AC018845.7| Homo sapiens chromosome 16 clone RP11-169E6, complete sequence Length = 176184 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 aacagccaaaatgaccaaaa 204 |||||||||||||||||||| Sbjct: 83982 aacagccaaaatgaccaaaa 84001
>gb|AC104838.3| Homo sapiens chromosome 1 clone RP4-671I22, complete sequence Length = 143280 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tcctctggcattttaccata 129 |||||||||||||||||||| Sbjct: 115764 tcctctggcattttaccata 115745
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 592 tgacgaactcctcccactccttgg 615 ||||| |||||||||||||||||| Sbjct: 2163466 tgacgtactcctcccactccttgg 2163489
>gb|AC156272.6| Mus musculus 10 BAC RP24-244K5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 166962 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 acaggaggttgcccctcata 152 |||||||||||||||||||| Sbjct: 50115 acaggaggttgcccctcata 50134
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 594 acgaactcctcccactcctt 613 |||||||||||||||||||| Sbjct: 190417 acgaactcctcccactcctt 190398
>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161808 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 594 acgaactcctcccactcctt 613 |||||||||||||||||||| Sbjct: 142026 acgaactcctcccactcctt 142007
>emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb0068K19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 96667 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 594 acgaactcctcccactcctt 613 |||||||||||||||||||| Sbjct: 84839 acgaactcctcccactcctt 84858
>gb|AC133959.4| Mus musculus BAC clone RP23-377P18 from 15, complete sequence Length = 143812 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 acaatctcttgatgcatcac 75 |||||||||||||||||||| Sbjct: 90857 acaatctcttgatgcatcac 90876 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,581,343 Number of Sequences: 3902068 Number of extensions: 4581343 Number of successful extensions: 83084 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82917 Number of HSP's gapped (non-prelim): 167 length of query: 708 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 685 effective length of database: 17,143,297,704 effective search space: 11743158927240 effective search space used: 11743158927240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)