ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22m04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472910.1| Oryza sativa (japonica cultivar-group), predic... 147 4e-32
2emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4,... 147 4e-32
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
4emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 147 4e-32
5ref|XM_472909.1| Oryza sativa (japonica cultivar-group), predic... 92 2e-15
6dbj|AK109889.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
7ref|XM_472911.1| Oryza sativa (japonica cultivar-group), predic... 46 0.12
8dbj|AK119297.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
9ref|NM_001016221.2| Xenopus tropicalis hypothetical protein LOC5... 42 1.9
10gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 42 1.9
11gb|AC158384.2| Mus musculus BAC clone RP24-97I24 from chromosome... 42 1.9
12gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome... 42 1.9
13emb|CR926305.2| Xenopus tropicalis finished cDNA, clone TEgg078c13 42 1.9
14gb|AC004829.2| Homo sapiens PAC clone RP4-530J23 from 7, complet... 40 7.4
15gb|AC146161.2| Pan troglodytes BAC clone RP43-1G6 from 7, comple... 40 7.4
16gb|AC145091.1| Pan troglodytes BAC clone RP43-12F8 from 7, compl... 40 7.4
17emb|AL731573.8| Human DNA sequence from clone RP11-215C13 on chr... 40 7.4
18emb|AL021879.3|HS209B9 Human DNA sequence from clone RP1-209B9 o... 40 7.4
19emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 40 7.4
20emb|AL589651.8| Mouse DNA sequence from clone RP23-138F20 on chr... 40 7.4
21emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in... 40 7.4
22gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Ca... 40 7.4
23gb|AF275265.3|AF275265 Mus musculus receptor protein tyrosine ph... 40 7.4
24gb|AC132956.4| Mus musculus BAC clone RP23-106K20 from chromosom... 40 7.4
25gb|AC175034.1| Mus musculus BAC clone RP23-204E23 from chromosom... 40 7.4
26emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 i... 40 7.4
27ref|XM_311192.2| Anopheles gambiae str. PEST ENSANGP00000001529 ... 40 7.4
28gb|BC089118.1| Xenopus laevis mis5p, mRNA (cDNA clone MGC:85070 ... 40 7.4
29gb|U44050.1|XLU44050 Xenopus laevis mis5 mRNA, complete cds 40 7.4
30emb|AL591586.8| Mouse DNA sequence from clone RP23-126L18 on chr... 40 7.4 
>ref|XM_472910.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1653

 Score =  147 bits (74), Expect = 4e-32
 Identities = 161/190 (84%)
 Strand = Plus / Minus

                                                                        
Query: 325  atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 384
            |||||| ||||||||||||||||||||| | |||  |||||||| |||| ||||||||||
Sbjct: 1576 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 1517

                                                                        
Query: 385  attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 444
            |  |||  |||||||||| ||| |||||    ||||||| ||| ||||| || ||||| |
Sbjct: 1516 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 1457

                                                                        
Query: 445  tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 504
            | |||||||| | ||||||||||||||||||||  ||||||||||||||||| |||| ||
Sbjct: 1456 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 1397

                      
Query: 505  atttgctgca 514
            ||||||||||
Sbjct: 1396 atttgctgca 1387
to top
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17,
             complete sequence
          Length = 129498

 Score =  147 bits (74), Expect = 4e-32
 Identities = 161/190 (84%)
 Strand = Plus / Minus

                                                                         
Query: 325   atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 384
             |||||| ||||||||||||||||||||| | |||  |||||||| |||| ||||||||||
Sbjct: 35648 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 35589

                                                                         
Query: 385   attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 444
             |  |||  |||||||||| ||| |||||    ||||||| ||| ||||| || ||||| |
Sbjct: 35588 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 35529

                                                                         
Query: 445   tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 504
             | |||||||| | ||||||||||||||||||||  ||||||||||||||||| |||| ||
Sbjct: 35528 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 35469

                       
Query: 505   atttgctgca 514
             ||||||||||
Sbjct: 35468 atttgctgca 35459



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 154/190 (81%)
 Strand = Plus / Minus

                                                                         
Query: 325   atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 384
             |||||| |||||||||||| |||||||| | |||  | |||||| |||| ||||||||||
Sbjct: 30773 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 30714

                                                                         
Query: 385   attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 444
             | ||||  || |||||    || ||||| |  || |||||||| ||||| || || || |
Sbjct: 30713 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 30654

                                                                         
Query: 445   tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 504
             |||||||||| |  |||||||||||||||||||  |||| ||||| |||||| |||| ||
Sbjct: 30653 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 30594

                       
Query: 505   atttgctgca 514
             ||||||||||
Sbjct: 30593 atttgctgca 30584



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 333   ttgaaccactggctctcagggtcgcag 359
             ||||||||||||||||| |||||||||
Sbjct: 39853 ttgaaccactggctctccgggtcgcag 39827
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  147 bits (74), Expect = 4e-32
 Identities = 161/190 (84%)
 Strand = Plus / Minus

                                                                            
Query: 325      atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 384
                |||||| ||||||||||||||||||||| | |||  |||||||| |||| ||||||||||
Sbjct: 24038669 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 24038610

                                                                            
Query: 385      attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 444
                |  |||  |||||||||| ||| |||||    ||||||| ||| ||||| || ||||| |
Sbjct: 24038609 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 24038550

                                                                            
Query: 445      tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 504
                | |||||||| | ||||||||||||||||||||  ||||||||||||||||| |||| ||
Sbjct: 24038549 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 24038490

                          
Query: 505      atttgctgca 514
                ||||||||||
Sbjct: 24038489 atttgctgca 24038480



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 154/190 (81%)
 Strand = Plus / Minus

                                                                            
Query: 325      atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 384
                |||||| |||||||||||| |||||||| | |||  | |||||| |||| ||||||||||
Sbjct: 24033794 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 24033735

                                                                            
Query: 385      attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 444
                | ||||  || |||||    || ||||| |  || |||||||| ||||| || || || |
Sbjct: 24033734 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 24033675

                                                                            
Query: 445      tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 504
                |||||||||| |  |||||||||||||||||||  |||| ||||| |||||| |||| ||
Sbjct: 24033674 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 24033615

                          
Query: 505      atttgctgca 514
                ||||||||||
Sbjct: 24033614 atttgctgca 24033605



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 333      ttgaaccactggctctcagggtcgcag 359
                ||||||||||||||||| |||||||||
Sbjct: 24042874 ttgaaccactggctctccgggtcgcag 24042848
to top
>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete
            sequence
          Length = 90767

 Score =  147 bits (74), Expect = 4e-32
 Identities = 161/190 (84%)
 Strand = Plus / Minus

                                                                        
Query: 325  atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 384
            |||||| ||||||||||||||||||||| | |||  |||||||| |||| ||||||||||
Sbjct: 4919 atataattttgaaccactggctctcaggattgcaatttggatctccggttaggcacttgc 4860

                                                                        
Query: 385  attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 444
            |  |||  |||||||||| ||| |||||    ||||||| ||| ||||| || ||||| |
Sbjct: 4859 acggatttgttgtgatgataccatcaggagtggcatccaggcatactctggttccatttt 4800

                                                                        
Query: 445  tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 504
            | |||||||| | ||||||||||||||||||||  ||||||||||||||||| |||| ||
Sbjct: 4799 tagtgagttcagtcgaaacatgcattcctgaatttgatattagctgccactttgaactgg 4740

                      
Query: 505  atttgctgca 514
            ||||||||||
Sbjct: 4739 atttgctgca 4730



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 154/190 (81%)
 Strand = Plus / Minus

                                                                       
Query: 325 atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 384
           |||||| |||||||||||| |||||||| | |||  | |||||| |||| ||||||||||
Sbjct: 205 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 146

                                                                       
Query: 385 attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 444
           | ||||  || |||||    || ||||| |  || |||||||| ||||| || || || |
Sbjct: 145 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 86

                                                                       
Query: 445 tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 504
           |||||||||| |  |||||||||||||||||||  |||| ||||| |||||| |||| ||
Sbjct: 85  tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 26

                     
Query: 505 atttgctgca 514
           ||||||||||
Sbjct: 25  atttgctgca 16



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 333  ttgaaccactggctctcagggtcgcag 359
            ||||||||||||||||| |||||||||
Sbjct: 9116 ttgaaccactggctctccgggtcgcag 9090
to top
>ref|XM_472909.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1665

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 154/190 (81%)
 Strand = Plus / Minus

                                                                        
Query: 325  atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 384
            |||||| |||||||||||| |||||||| | |||  | |||||| |||| ||||||||||
Sbjct: 1582 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 1523

                                                                        
Query: 385  attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 444
            | ||||  || |||||    || ||||| |  || |||||||| ||||| || || || |
Sbjct: 1522 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 1463

                                                                        
Query: 445  tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 504
            |||||||||| |  |||||||||||||||||||  |||| ||||| |||||| |||| ||
Sbjct: 1462 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 1403

                      
Query: 505  atttgctgca 514
            ||||||||||
Sbjct: 1402 atttgctgca 1393
to top
>dbj|AK109889.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E03, full
            insert sequence
          Length = 1992

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 154/190 (81%)
 Strand = Plus / Minus

                                                                        
Query: 325  atataactttgaaccactggctctcagggtcgcaggttggatcttcggtcaggcacttgc 384
            |||||| |||||||||||| |||||||| | |||  | |||||| |||| ||||||||||
Sbjct: 1592 atataattttgaaccactgactctcaggattgcaattcggatctacggttaggcacttgc 1533

                                                                        
Query: 385  attgatccgttgtgatgacaccgtcagggcccgcatccaagcacactctagtcccattct 444
            | ||||  || |||||    || ||||| |  || |||||||| ||||| || || || |
Sbjct: 1532 actgatttgtcgtgatatttccatcaggactggcctccaagcatactctggttccgttat 1473

                                                                        
Query: 445  tggtgagttcggccgaaacatgcattcctgaatcagatattagctgccacttcgaacagg 504
            |||||||||| |  |||||||||||||||||||  |||| ||||| |||||| |||| ||
Sbjct: 1472 tggtgagttcagttgaaacatgcattcctgaatttgatagtagcttccactttgaactgg 1413

                      
Query: 505  atttgctgca 514
            ||||||||||
Sbjct: 1412 atttgctgca 1403
to top
>ref|XM_472911.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1668

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 333  ttgaaccactggctctcagggtcgcag 359
            ||||||||||||||||| |||||||||
Sbjct: 1574 ttgaaccactggctctccgggtcgcag 1548
to top
>dbj|AK119297.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E08, full
           insert sequence
          Length = 2877

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 333 ttgaaccactggctctcagggtcgcag 359
           ||||||||||||||||| |||||||||
Sbjct: 358 ttgaaccactggctctccgggtcgcag 384
to top
>ref|NM_001016221.2| Xenopus tropicalis hypothetical protein LOC548975 (LOC548975), mRNA
          Length = 2625

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 499  aacaggatttgctgcagccag 519
            |||||||||||||||||||||
Sbjct: 1540 aacaggatttgctgcagccag 1520
to top
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 1       attggtccctagaccccttagattc 25
               |||||||||||||||||||| ||||
Sbjct: 4317956 attggtccctagaccccttaaattc 4317980
to top
>gb|AC158384.2| Mus musculus BAC clone RP24-97I24 from chromosome 9, complete sequence
          Length = 163817

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 73    tttgttttgacagaaaaagaa 93
             |||||||||||||||||||||
Sbjct: 15741 tttgttttgacagaaaaagaa 15761
to top
>gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome 9, complete sequence
          Length = 175708

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 73    tttgttttgacagaaaaagaa 93
             |||||||||||||||||||||
Sbjct: 38587 tttgttttgacagaaaaagaa 38567
to top
>emb|CR926305.2| Xenopus tropicalis finished cDNA, clone TEgg078c13
          Length = 2625

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 499  aacaggatttgctgcagccag 519
            |||||||||||||||||||||
Sbjct: 1540 aacaggatttgctgcagccag 1520
to top
>gb|AC004829.2| Homo sapiens PAC clone RP4-530J23 from 7, complete sequence
          Length = 129837

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 69    gtgatttgttttgacagaaaaaga 92
             |||||||| |||||||||||||||
Sbjct: 62019 gtgatttgctttgacagaaaaaga 61996
to top
>gb|AC146161.2| Pan troglodytes BAC clone RP43-1G6 from 7, complete sequence
          Length = 205885

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 69    gtgatttgttttgacagaaaaaga 92
             |||||||| |||||||||||||||
Sbjct: 39719 gtgatttgctttgacagaaaaaga 39742
to top
>gb|AC145091.1| Pan troglodytes BAC clone RP43-12F8 from 7, complete sequence
          Length = 175672

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 69     gtgatttgttttgacagaaaaaga 92
              |||||||| |||||||||||||||
Sbjct: 163884 gtgatttgctttgacagaaaaaga 163907
to top
>emb|AL731573.8| Human DNA sequence from clone RP11-215C13 on chromosome 10, complete
             sequence
          Length = 131465

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    acagaaaaagaaagtgctta 101
             ||||||||||||||||||||
Sbjct: 95286 acagaaaaagaaagtgctta 95267
to top
>emb|AL021879.3|HS209B9 Human DNA sequence from clone RP1-209B9 on chromosome 20p12 Contains
             the HAO1 gene for hydroxyacid oxidase (glycolate oxidase)
             1, ESTs, STSs and GSSs, complete sequence
          Length = 98569

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    tgacagaaaaagaaagtgct 99
             ||||||||||||||||||||
Sbjct: 45075 tgacagaaaaagaaagtgct 45094
to top
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 524     gagcttttgcagtatcaccc 543
               ||||||||||||||||||||
Sbjct: 2896872 gagcttttgcagtatcaccc 2896853
to top
>emb|AL589651.8| Mouse DNA sequence from clone RP23-138F20 on chromosome 13 Contains
             five genes for olfactory receptors, a novel gene, the H1f5
             gene for H1 histone family member 5, three genes and one
             pseudogene for H2a histone family members, four genes for
             H2b, two genes for H4, and two genes for H3 histone family
             members and seven CpG islands, complete sequence
          Length = 222823

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tttattctgaactgaacaac 54
             ||||||||||||||||||||
Sbjct: 98541 tttattctgaactgaacaac 98522
to top
>emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in linkage group 8,
              complete sequence
          Length = 218866

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     ttttgacagaaaaagaaagt 96
              ||||||||||||||||||||
Sbjct: 214302 ttttgacagaaaaagaaagt 214283
to top
>gb|AC026362.38| Homo sapiens 12 BAC RP11-197N18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163077

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    agaggcctcacctggcatgc 312
              ||||||||||||||||||||
Sbjct: 150040 agaggcctcacctggcatgc 150021
to top
>gb|AF275265.3|AF275265 Mus musculus receptor protein tyrosine phosphatase-rho (Ptprt) gene,
            exons 10 and 11 and partial cds
          Length = 5957

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 293  agaggcctcacctggcatgcctct 316
            ||||||||||||| ||||||||||
Sbjct: 3377 agaggcctcaccttgcatgcctct 3400
to top
>gb|AC132956.4| Mus musculus BAC clone RP23-106K20 from chromosome 7, complete sequence
          Length = 195204

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    gttttgacagaaaaagaaag 95
             ||||||||||||||||||||
Sbjct: 52418 gttttgacagaaaaagaaag 52437
to top
>gb|AC175034.1| Mus musculus BAC clone RP23-204E23 from chromosome 7, complete sequence
          Length = 208487

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    gttttgacagaaaaagaaag 95
             ||||||||||||||||||||
Sbjct: 58251 gttttgacagaaaaagaaag 58232
to top
>emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 in linkage group 7,
             complete sequence
          Length = 197927

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    ttttgacagaaaaagaaagt 96
             ||||||||||||||||||||
Sbjct: 37316 ttttgacagaaaaagaaagt 37335
to top
>ref|XM_311192.2| Anopheles gambiae str. PEST ENSANGP00000001529
           (ENSANGG00000001295), partial mRNA
          Length = 2277

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 521 cccgagcttttgcagtatca 540
           ||||||||||||||||||||
Sbjct: 792 cccgagcttttgcagtatca 773
to top
>gb|BC089118.1| Xenopus laevis mis5p, mRNA (cDNA clone MGC:85070 IMAGE:6866732),
            complete cds
          Length = 2642

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 500  acaggatttgctgcagccag 519
            ||||||||||||||||||||
Sbjct: 1567 acaggatttgctgcagccag 1548
to top
>gb|U44050.1|XLU44050 Xenopus laevis mis5 mRNA, complete cds
          Length = 2616

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 500  acaggatttgctgcagccag 519
            ||||||||||||||||||||
Sbjct: 1562 acaggatttgctgcagccag 1543
to top
>emb|AL591586.8| Mouse DNA sequence from clone RP23-126L18 on chromosome 2, complete
              sequence
          Length = 187043

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 293    agaggcctcacctggcatgcctct 316
              ||||||||||||| ||||||||||
Sbjct: 154961 agaggcctcaccttgcatgcctct 154938


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,433,149
Number of Sequences: 3902068
Number of extensions: 4433149
Number of successful extensions: 80069
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79960
Number of HSP's gapped (non-prelim): 105
length of query: 548
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 525
effective length of database: 17,143,297,704
effective search space: 9000231294600
effective search space used: 9000231294600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top