ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal0h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KLOTB_MOUSE (Q99N32) Beta klotho (BetaKlotho) (Klotho beta-like ... 33 0.66
2END3_SYNY3 (P73715) Endonuclease III (EC 4.2.99.18) (DNA-(apurin... 31 1.9
3MRIP_RAT (Q9ERE6) Myosin phosphatase Rho-interacting protein (Rh... 31 1.9
4MRIP_MOUSE (P97434) Myosin phosphatase Rho-interacting protein (... 31 1.9
5MRIP_HUMAN (Q6WCQ1) Myosin phosphatase Rho-interacting protein (... 31 1.9
6SYQ_CAEEL (O62431) Probable glutaminyl-tRNA synthetase (EC 6.1.1... 30 3.3
7ARVC_HUMAN (O00192) Armadillo repeat protein deleted in velo-car... 30 4.3
8WDR67_HUMAN (Q96DN5) WD-repeat protein 67 29 9.5
9WDR67_PONPY (Q5RD21) WD-repeat protein 67 29 9.5
10FGF11_MOUSE (P70378) Fibroblast growth factor 11 (FGF-11) (Fibro... 29 9.5

>KLOTB_MOUSE (Q99N32) Beta klotho (BetaKlotho) (Klotho beta-like protein)|
          Length = 1043

 Score = 32.7 bits (73), Expect = 0.66
 Identities = 23/73 (31%), Positives = 36/73 (49%)
 Frame = -3

Query: 237  KESVQYYSFAVTLLYIPSTNHAHIWCIPHRKFYCHCCQSAVLQCKEL*ALPCCSPSRLTP 58
            K SVQ+YS  ++   +P+ N +     P     C  C S +++ K L    CC  S L  
Sbjct: 950  KSSVQFYSKLISSSGLPAENRSPACGQPAEDTDCTIC-SFLVEKKPLIFFGCCFISTLAV 1008

Query: 57   SLTHTVTLHHHRK 19
             L  ++T+ HH+K
Sbjct: 1009 LL--SITVFHHQK 1019



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>END3_SYNY3 (P73715) Endonuclease III (EC 4.2.99.18) (DNA-(apurinic or|
           apyrimidinic site) lyase)
          Length = 219

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -1

Query: 236 KNLYSTIVLL*LCYIYPQPTTPISGAFPIGSFTAIVVSQQCCNARSSRLCPAV 78
           K   +T +LL L  +YP  T  +    P+    A ++S QC + R +++ PA+
Sbjct: 11  KKQRATEILLILKKLYPGATCSLDYQTPVQLLVATILSAQCTDERVNKVTPAL 63



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>MRIP_RAT (Q9ERE6) Myosin phosphatase Rho-interacting protein|
           (Rho-interacting protein 3) (p116Rip) (RIP3)
          Length = 1029

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -3

Query: 360 SLRFGY---KQAEAGRCAMEQWHHQGFKDGEREQGEKMEDGKLEKESVQYYSFAVTLLYI 190
           S R GY      E G  AME+ H +  +D +R+   ++E  + EK+ +     A T+  I
Sbjct: 717 SAREGYVLQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAI 776

Query: 189 PSTNHAH 169
            +  +AH
Sbjct: 777 EAMKNAH 783



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>MRIP_MOUSE (P97434) Myosin phosphatase Rho-interacting protein|
           (Rho-interacting protein 3) (p116Rip) (RIP3)
          Length = 1024

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -3

Query: 360 SLRFGY---KQAEAGRCAMEQWHHQGFKDGEREQGEKMEDGKLEKESVQYYSFAVTLLYI 190
           S R GY      E G  AME+ H +  +D +R+   ++E  + EK+ +     A T+  I
Sbjct: 712 SAREGYVLQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAI 771

Query: 189 PSTNHAH 169
            +  +AH
Sbjct: 772 EAMKNAH 778



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>MRIP_HUMAN (Q6WCQ1) Myosin phosphatase Rho-interacting protein|
           (Rho-interacting protein 3) (M-RIP) (RIP3) (p116Rip)
          Length = 1024

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -3

Query: 360 SLRFGY---KQAEAGRCAMEQWHHQGFKDGEREQGEKMEDGKLEKESVQYYSFAVTLLYI 190
           S R GY      E G  AME+ H +  +D +R+   ++E  + EK+ +     A T+  I
Sbjct: 712 SAREGYVLQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAI 771

Query: 189 PSTNHAH 169
            +  +AH
Sbjct: 772 EAMKNAH 778



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>SYQ_CAEEL (O62431) Probable glutaminyl-tRNA synthetase (EC 6.1.1.18)|
           (Glutamine--tRNA ligase) (GlnRS)
          Length = 786

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 297 QGFKDGEREQGEKMEDGKLEKESVQYYSFAVTLLYIPSTNHAHIWCIPHRKFYCHC-CQS 121
           +  K+G+ ++GE     KL  E  +    A  + Y+P     + WCI     Y HC C S
Sbjct: 394 EDMKNGKFDEGEATLRLKLTLEEGKVDPVAYRIKYVPHHRTGNQWCIYPTYDYTHCLCDS 453



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>ARVC_HUMAN (O00192) Armadillo repeat protein deleted in velo-cardio-facial|
           syndrome
          Length = 962

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 327 GRCAMEQWHHQGFKDGEREQGEKMEDGKLEKESVQYYSFAVTLLYIP 187
           G+ A E+W HQG KDGE ++     D     E+ + +     LLY P
Sbjct: 619 GKKAKEEWFHQGKKDGEMDRNFDTLDLPKRTEAAKGFE----LLYQP 661



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>WDR67_HUMAN (Q96DN5) WD-repeat protein 67|
          Length = 1066

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -3

Query: 240 EKESVQYYSFAVT-----LLYIPSTNHAHIWCIPHRKFY 139
           E  S+ Y  FAVT     L     +NH H+WC+  R+ +
Sbjct: 211 ESSSILYKVFAVTRDGRILAAGGKSNHLHLWCLEARQLF 249



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>WDR67_PONPY (Q5RD21) WD-repeat protein 67|
          Length = 944

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -3

Query: 240 EKESVQYYSFAVT-----LLYIPSTNHAHIWCIPHRKFY 139
           E  S+ Y  FAVT     L     +NH H+WC+  R+ +
Sbjct: 106 ESSSILYKVFAVTRDGRILAAGGKSNHLHLWCLEARQLF 144



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>FGF11_MOUSE (P70378) Fibroblast growth factor 11 (FGF-11) (Fibroblast growth|
           factor homologous factor 3) (FHF-3)
          Length = 225

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 368 FVFLCGLGISKQRQEGAQWSSGIIKDSRMEKGSKGKRWKTGS 243
           +  L    + +QR+ G  W  G+ K+ R+ KG++ K+ K  +
Sbjct: 153 YYVLYASALYRQRRSGRAWYLGLDKEGRVMKGNRVKKTKAAA 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,343,027
Number of Sequences: 219361
Number of extensions: 1532810
Number of successful extensions: 4380
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4375
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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