ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23b03 |
|---|---|
| Clone Library Name | barley_pub |
>RPB3A_ARATH (Q39211) DNA-directed RNA polymerase II 36 kDa polypeptide A (EC| 2.7.7.6) (RNA polymerase II subunit 3) Length = 319 Score = 206 bits (525), Expect = 4e-53 Identities = 99/132 (75%), Positives = 120/132 (90%) Frame = -3 Query: 668 RAIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDP 489 RAIARKGIGKDHAKWSPAATVTFMYEPDI IN+++M+TL+ EEK +ESSPTKVF +DP Sbjct: 166 RAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDP 225 Query: 488 VTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNA 309 VT+QV +VD EAYTYD+EVIKKAEAMGKPGL+EI+ K+DSF+FTVE+TGA+ A +L++NA Sbjct: 226 VTRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNA 285 Query: 308 ITVLRQKLDAVR 273 I +L+QKLDAVR Sbjct: 286 IDLLKQKLDAVR 297
>RPB3B_ARATH (Q39212) DNA-directed RNA polymerase II 36 kDa polypeptide B (EC| 2.7.7.6) (RNA polymerase II subunit 3) Length = 319 Score = 205 bits (521), Expect = 1e-52 Identities = 99/132 (75%), Positives = 117/132 (88%) Frame = -3 Query: 668 RAIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDP 489 +A+ARKGIGKDHAKWSPAATVT+MYEPDI IN+E+M TLT EEK +ESSPTKVF IDP Sbjct: 166 KALARKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDP 225 Query: 488 VTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNA 309 VT QV +VD EAYTYD+EVIKKAEAMGKPGL+EI+ K DSFVFTVE+TGA+ A +L++NA Sbjct: 226 VTGQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNA 285 Query: 308 ITVLRQKLDAVR 273 I +L+QKLDA+R Sbjct: 286 IDILKQKLDAIR 297
>CNJC_TETTH (P16925) Conjugation stage-specific protein| Length = 310 Score = 104 bits (260), Expect = 2e-22 Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 1/130 (0%) Frame = -3 Query: 659 ARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQ 480 A+KGIGK H+KW+P TF EP+I +QE+ + L +E+K++ V + PTKVF I+P T Sbjct: 166 AQKGIGKMHSKWNPVCISTFSVEPEIIFDQEI-QNLDIEQKKALVNACPTKVFGINPHTN 224 Query: 479 QVTIVDAEAYTYDDEVIKK-AEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAIT 303 + + D Y +E + K AE KP L++I+ K+D F F VETTG + E++ + Sbjct: 225 TLEVQDHMKCMYCEECVYKCAEDFQKPKLIKIDHKKDKFFFKVETTGVMKPVEVLRRGFS 284 Query: 302 VLRQKLDAVR 273 LRQKLD +R Sbjct: 285 TLRQKLDFMR 294
>RPC5_YEAST (P07703) DNA-directed RNA polymerases I and III 40 kDa polypeptide| (EC 2.7.7.6) (AC40) (C37) Length = 335 Score = 61.6 bits (148), Expect = 2e-09 Identities = 36/126 (28%), Positives = 65/126 (51%) Frame = -3 Query: 650 GIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVT 471 GIG DHAK+SP +T ++ P I I ++ + E + + + P V ID + + Sbjct: 211 GIGGDHAKFSPVSTASYRLLPQINI----LQPIKGESARRFQKCFPPGVIGIDEGSDEAY 266 Query: 470 IVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQ 291 + DA T EV++ E K V++ + F+F VE+ GA+T E+ ++ +L+ Sbjct: 267 VKDARKDTVSREVLRYEEFADK---VKLGRVRNHFIFNVESAGAMTPEEIFFKSVRILKN 323 Query: 290 KLDAVR 273 K + ++ Sbjct: 324 KAEYLK 329
>RPOD_METTH (O26144) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 264 Score = 58.2 bits (139), Expect = 2e-08 Identities = 31/130 (23%), Positives = 64/130 (49%) Frame = -3 Query: 665 AIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPV 486 A+A+ G+G++HAKW P + Y P I +++ E L +E+ P V + Sbjct: 140 AVAQLGVGREHAKWEPTTACAYKYYPRIEFSEDCDECL------ECIEACPRDV--LGEE 191 Query: 485 TQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAI 306 + + +VD E + ++ + +++ +E F+F +ET G++ ++++ A Sbjct: 192 SGKPVVVDLENCSMCKSCVRACDKRA----IDVGYEEGKFIFRIETDGSVDPKDVLLKAC 247 Query: 305 TVLRQKLDAV 276 +LR K + V Sbjct: 248 DILRDKAEQV 257
>RPC5_SCHPO (O94616) DNA-directed RNA polymerases I and III 40 kDa polypeptide| (EC 2.7.7.6) (AC40) Length = 348 Score = 53.9 bits (128), Expect = 4e-07 Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 3/129 (2%) Frame = -3 Query: 650 GIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDID---PVTQ 480 GIG+DHAK+SP AT ++ P I I + + E+ + + P V +++ + Sbjct: 218 GIGQDHAKFSPVATASYRLLPTIHI----LSPIEGEDAVKFQKCFPKGVIELEEGPDGKK 273 Query: 479 QVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITV 300 Q + D T E ++ E K V++ D ++F+VE+TG + L + +I V Sbjct: 274 QARVADVRKDTVSRECLRHPEFADK---VQLGRVRDHYLFSVESTGIMKPDVLFIKSIAV 330 Query: 299 LRQKLDAVR 273 L+ K AV+ Sbjct: 331 LKSKCLAVK 339
>RPOD_METKA (Q8TVB8) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 275 Score = 53.9 bits (128), Expect = 4e-07 Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 3/133 (2%) Frame = -3 Query: 662 IARKGIGKDHAKWSPAATVTFMYEPDIRINQELMET--LTLEEKQSWVESSPTKVFDIDP 489 IA G+G +HAKW P + V + P++ I+++ ++ +T E Q + +V ID Sbjct: 146 IAVPGLGLEHAKWKPVSAVGYKGLPELEIDEDKLKEKKITYECPQGIIRIENGEVVHID- 204 Query: 488 VTQQVTIVDAEAYT-YDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMN 312 + + + Y Y+ E G V + ++D+FVF VET G+++ I+ Sbjct: 205 ---EDRLPECRMYKEYERET---------DGAVRVRLRDDAFVFNVETDGSMSLDTAILK 252 Query: 311 AITVLRQKLDAVR 273 A+ + KL++++ Sbjct: 253 ALDAIEHKLESLK 265
>RPOD_ARCFU (O28002) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 264 Score = 53.1 bits (126), Expect = 7e-07 Identities = 35/128 (27%), Positives = 65/128 (50%) Frame = -3 Query: 665 AIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPV 486 A+AR G G++HAK+ P + + P+I +N+ +E+ P VF+ D Sbjct: 140 AVARLGTGREHAKFQPVSVCVYKIIPEIVVNE------NCNGCGDCIEACPRNVFEKD-- 191 Query: 485 TQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAI 306 +V + + A + E ++ E + +N + ++F+FTVE TGA+ E++ A+ Sbjct: 192 GDKVRVKNVMACSMCGECVEVCEM----NAISVN-ETNNFLFTVEGTGALPVREVMKKAL 246 Query: 305 TVLRQKLD 282 +LR K + Sbjct: 247 EILRSKAE 254
>RPA5_HUMAN (O15160) DNA-directed RNA polymerase I 40 kDa polypeptide (EC| 2.7.7.6) (RPA40) (RPA39) Length = 346 Score = 52.8 bits (125), Expect = 9e-07 Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 9/136 (6%) Frame = -3 Query: 653 KGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPV--TQ 480 KGIGKDHAK+SP AT ++ PDI L+E + E + V ++ V + Sbjct: 216 KGIGKDHAKFSPVATASYRLLPDI----TLLEPVEGEAAEELSRCFSPGVIEVQEVQGKK 271 Query: 479 QVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITV 300 + + T+ E+ + E + K +V + D ++F+VE+TG + L+ AI V Sbjct: 272 VARVANPRLDTFSREIFRN-EKLKK--VVRLARVRDHYIFSVESTGVLPPDVLVSEAIKV 328 Query: 299 LRQK-------LDAVR 273 L K LDAV+ Sbjct: 329 LMGKCRRFLDELDAVQ 344
>RPB3_HUMAN (P19387) DNA-directed RNA polymerase II 33 kDa polypeptide (EC| 2.7.7.6) (RPB3) (RNA polymerase II subunit 3) (RPB33) (RPB31) Length = 275 Score = 52.4 bits (124), Expect = 1e-06 Identities = 33/128 (25%), Positives = 58/128 (45%) Frame = -3 Query: 668 RAIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDP 489 RA A+KG GK+HAKW+P A V F Y+PD + + + W +S +++ + Sbjct: 162 RAYAKKGFGKEHAKWNPTAGVAFEYDPD-----NALRHTVYPKPEEWPKSEYSELDE--- 213 Query: 488 VTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNA 309 D YD N K + F + VE+ G++ ++++A Sbjct: 214 --------DESQAPYDP-----------------NGKPERFYYNVESCGSLRPETIVLSA 248 Query: 308 ITVLRQKL 285 ++ L++KL Sbjct: 249 LSGLKKKL 256
>RPA5_MOUSE (P52432) DNA-directed RNA polymerase I 40 kDa polypeptide (EC| 2.7.7.6) (RPA40) Length = 346 Score = 51.2 bits (121), Expect = 3e-06 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 2/124 (1%) Frame = -3 Query: 653 KGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPV--TQ 480 KGIGKDHAK+SP AT ++ P I L+E + E + + V +++ V + Sbjct: 216 KGIGKDHAKFSPVATASYRLLPAI----TLLEPVEGEAAEELSQCFSPGVIEVEEVQGKK 271 Query: 479 QVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITV 300 + +A T+ E+ + E + K V + D ++F+VE+TG + L+ AI + Sbjct: 272 VARVANARLDTFSREIFRH-EKLKK--AVRLARVRDHYIFSVESTGVLPPDVLVSEAIKI 328 Query: 299 LRQK 288 L K Sbjct: 329 LMGK 332
>RPOD_PYRKO (Q5JJF4) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 259 Score = 51.2 bits (121), Expect = 3e-06 Identities = 40/128 (31%), Positives = 63/128 (49%) Frame = -3 Query: 665 AIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPV 486 A AR G GKDHAKW P V + Y I +++++ + L+E + + ++ Sbjct: 133 AYARLGRGKDHAKWQPGF-VYYKYLTKIHVSKDVPDWEELKEL------AERRGLPVEES 185 Query: 485 TQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAI 306 +++ I +A+ K E MGK EI SFVFTVET G + E++ A+ Sbjct: 186 DEEIVITTIKAFYLPR---KFEEHMGKGIREEI--VPGSFVFTVETNGELPVEEIVSIAL 240 Query: 305 TVLRQKLD 282 +L +K D Sbjct: 241 KILMRKSD 248
>RPB3_YEAST (P16370) DNA-directed RNA polymerase II 45 kDa polypeptide (EC| 2.7.7.6) (B44.5) Length = 318 Score = 48.5 bits (114), Expect = 2e-05 Identities = 33/129 (25%), Positives = 59/129 (45%) Frame = -3 Query: 662 IARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVT 483 +A+KGI K+HAKW PAA + F Y+P + L+ W E K + Sbjct: 158 VAKKGIAKEHAKWGPAAAIEFEYDPWNK----------LKHTDYWYEQDSAKEWP----- 202 Query: 482 QQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAIT 303 ++ Y+D + G P + A+ D+F VE+ G+I ++++ I Sbjct: 203 ------QSKNCEYEDPPNE-----GDP--FDYKAQADTFYMNVESVGSIPVDQVVVRGID 249 Query: 302 VLRQKLDAV 276 L++K+ ++ Sbjct: 250 TLQKKVASI 258
>RPOD_PICTO (Q6KZP5) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 271 Score = 47.4 bits (111), Expect = 4e-05 Identities = 32/123 (26%), Positives = 55/123 (44%) Frame = -3 Query: 650 GIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVT 471 G GKDHAKW + V++ Y + +IN+ LE + + P V I ++T Sbjct: 154 GRGKDHAKWQVTSGVSYKYHREFKINKN-----ELENWSFYKDKCPKSV--ISENENEIT 206 Query: 470 IVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQ 291 D Y ++ + V I + F+F ET G++TA E + A+ L++ Sbjct: 207 FTDDVECRYLQQLFDEKSG------VTITEDDTKFIFQFETDGSLTAIETLDYALKRLKE 260 Query: 290 KLD 282 + + Sbjct: 261 RFN 263
>RPB3_SCHPO (P37382) DNA-directed RNA polymerase II 33 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 3) Length = 297 Score = 47.0 bits (110), Expect = 5e-05 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 2/130 (1%) Frame = -3 Query: 668 RAIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDP 489 R IA+KGI K+HAKWSP + V F Y+P + L+ W E+ Sbjct: 157 RCIAKKGIAKEHAKWSPTSAVAFEYDPWNK----------LQHTDYWFEND--------- 197 Query: 488 VTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKED--SFVFTVETTGAITAYELIM 315 DAE + ++ G+P N +E+ F VE+ G+I E+++ Sbjct: 198 -------ADAEWPKSKNADWEEPPREGEP----FNFQEEPRRFYMDVESVGSIPPNEIMV 246 Query: 314 NAITVLRQKL 285 + +L++KL Sbjct: 247 QGLRILQEKL 256
>RPOD_PYRFU (Q8U0E4) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 261 Score = 43.9 bits (102), Expect = 4e-04 Identities = 33/128 (25%), Positives = 61/128 (47%) Frame = -3 Query: 665 AIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPV 486 A A+ G GKDHAKW P V + Y + I++ + E L++ + + ++ Sbjct: 135 AYAKLGRGKDHAKWQPGF-VYYKYYTIVHISKSIPEWKELKKL------AKKRGLPVEET 187 Query: 485 TQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAI 306 ++V + + + + E GK EI ++++FTVET G + E++ A+ Sbjct: 188 EEEVLVTTIKPFYIPKDF---EEYEGKEIWEEI--VPNTYIFTVETNGELPVEEIVSIAL 242 Query: 305 TVLRQKLD 282 +L +K D Sbjct: 243 KILMRKAD 250
>RPOD_THEVO (Q97B93) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 271 Score = 43.9 bits (102), Expect = 4e-04 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Frame = -3 Query: 650 GIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWV---ESSPTKVFDIDPVTQ 480 G K+HAKW + V + Y + +N++L E W E P V D Sbjct: 155 GTAKEHAKWQVTSGVAYKYHREFEVNKKLFE--------DWAKIKERCPKSVLSED---- 202 Query: 479 QVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITV 300 + TIV + Y +D I + + V+I + F+F ET G++TA E + A+ Sbjct: 203 ENTIVFTDDYGCNDLSI-----LFESDGVQIKEDDSRFIFHFETDGSLTAEETLSYALNR 257 Query: 299 LRQK 288 L + Sbjct: 258 LMDR 261
>RPOD_PYRHO (O59303) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 259 Score = 43.5 bits (101), Expect = 6e-04 Identities = 39/128 (30%), Positives = 61/128 (47%) Frame = -3 Query: 665 AIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPV 486 A A+ G GKDHAKW P T + Y + I++++ L K + PTK Sbjct: 133 AYAKLGRGKDHAKWQPGFTY-YKYFTRVHISKKINGWEKLA-KLAKKRGLPTKE------ 184 Query: 485 TQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAI 306 ++ IV+ Y + ++ E GK EI D++VF VET G + E++ A+ Sbjct: 185 NEEEVIVETIKPFYIPKEFEEYE--GKEIWEEI--VPDTYVFVVETNGELPVEEIVKIAL 240 Query: 305 TVLRQKLD 282 +L +K D Sbjct: 241 RILMRKAD 248
>RPOD_PYRAB (Q9V198) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 259 Score = 42.7 bits (99), Expect = 0.001 Identities = 36/128 (28%), Positives = 58/128 (45%) Frame = -3 Query: 665 AIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPV 486 A A+ G GKDHAKW P T + Y I I++E+ E +K + P K Sbjct: 133 AFAKLGRGKDHAKWQPGFTY-YKYFTRIHISKEI-EGWEKLKKLAKKRGLPVK------E 184 Query: 485 TQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAI 306 + IV+ Y + ++ E G + +++VF VET G + E++ A+ Sbjct: 185 NENEVIVETIKPFYIPKEFEEYEGKG----IWEEIVPNTYVFVVETNGELPVEEIVKIAL 240 Query: 305 TVLRQKLD 282 +L +K D Sbjct: 241 KILMRKAD 248
>RPB3_MOUSE (P97760) DNA-directed RNA polymerase II 33 kDa polypeptide (EC| 2.7.7.6) (RPB3) (RNA polymerase II subunit 3) (RPB33) (RPB31) Length = 275 Score = 41.6 bits (96), Expect = 0.002 Identities = 33/128 (25%), Positives = 55/128 (42%) Frame = -3 Query: 668 RAIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDP 489 RA +K GK+HAKW+P A V F Y+PD + T+ K E ++ ++D Sbjct: 162 RAYVKKRSGKEHAKWNPTAGVAFEYDPDNGLRH------TVYPKPE--EGPKSEYSELDE 213 Query: 488 VTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNA 309 D YD N K + F + VE+ G++ + ++A Sbjct: 214 --------DESQAPYDP-----------------NGKPERFYYNVESCGSLRPETIGLSA 248 Query: 308 ITVLRQKL 285 ++ L++KL Sbjct: 249 LSGLKKKL 256
>RPOD_THEAC (Q9HJD9) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 271 Score = 40.8 bits (94), Expect = 0.004 Identities = 28/123 (22%), Positives = 53/123 (43%) Frame = -3 Query: 650 GIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVT 471 G K+HAKW + V++ Y + ++++ E+ Q + P V ++ Sbjct: 155 GTAKEHAKWQVTSGVSYKYHREFHVSKK-----DFEDWQKLKGACPKSV---------MS 200 Query: 470 IVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQ 291 D E DD + + V + + F+F ET G++TA E ++ A+ L+ Sbjct: 201 ETDTEIVFTDDFGCNDLNVLFESDGVNMIEDDSRFIFQFETDGSLTAKETLLYALNRLKD 260 Query: 290 KLD 282 + D Sbjct: 261 RWD 263
>RPOD_METMA (Q8PV16) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 266 Score = 40.0 bits (92), Expect = 0.006 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 5/133 (3%) Frame = -3 Query: 665 AIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPV 486 AIA G G+D KW + P I I + P + Sbjct: 141 AIAHMGYGRDSVKWQAGVACGYKNVPVITIE-------NCDACGHCAAECPKGI------ 187 Query: 485 TQQVTIVDAEAYTYDDEVIK-----KAEAMGKPGLVEINAKEDSFVFTVETTGAITAYEL 321 + + +A A +D++IK E + ++++ E++FVFT+E+ G+ TA +L Sbjct: 188 ---IRVEEAGARIAEDDLIKCSLCRLCEQVCDINAIKVDFYENAFVFTMESDGSYTAKDL 244 Query: 320 IMNAITVLRQKLD 282 +NA V++ K + Sbjct: 245 TINAANVIKGKAE 257
>RPOD_SULTO (Q96YW0) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 264 Score = 38.9 bits (89), Expect = 0.014 Identities = 29/128 (22%), Positives = 58/128 (45%) Frame = -3 Query: 656 RKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQ 477 R G GK+H K+SP + Y P + + + E P VF ++ + Sbjct: 147 RLGYGKEHIKFSPVSIAVVRYYPHVEVKGNCEKAF---------EVCPEGVFGME--NGK 195 Query: 476 VTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVL 297 + + + A T +E IK E + I+A E+ ++ +E+ G++ +++ A L Sbjct: 196 LFVKNEVACTLCEECIKYCE-----NNIFISAVENKYILEIESVGSLKPERILIEAGKSL 250 Query: 296 RQKLDAVR 273 +KL+ ++ Sbjct: 251 LRKLNQLK 258
>RPOD_SULAC (P39471) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 264 Score = 38.9 bits (89), Expect = 0.014 Identities = 29/128 (22%), Positives = 57/128 (44%) Frame = -3 Query: 656 RKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQ 477 R G GK+H K+SP + Y P + + L + VE P VF ++ + Sbjct: 146 RLGYGKEHIKYSPVSVSIVRYYPKVTV---------LGNCEKAVEVCPEGVFAME--NNK 194 Query: 476 VTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVL 297 + + + + +E +K G V I + E+ F+ +E+ G++ +++ A L Sbjct: 195 LVVKNELSCILCEECLKYC-----AGSVSIESVENKFILEIESVGSLKPERILIEASKSL 249 Query: 296 RQKLDAVR 273 +KL ++ Sbjct: 250 LRKLSELK 257
>RPOD_PYRAE (Q8ZYQ3) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 260 Score = 37.0 bits (84), Expect = 0.054 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Frame = -3 Query: 665 AIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLE---EKQSWVESSPTKVFDI 495 A A+ G+ KDHAKW AAT ++ Y P + + E + E + ++ +E S K Sbjct: 141 AYAKLGVAKDHAKWQ-AATASYYYYPKVVVKSENCREMCKEICRQLENPIECSFNK---- 195 Query: 494 DPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIM 315 A+T D + K GL E+ ++ +VF VE+ G + Sbjct: 196 -------------AWTCKD--------LCKEGL-EVTWDKNKYVFWVESFGNYDVNTALR 233 Query: 314 NAITVLRQK 288 A +L++K Sbjct: 234 EAFRILKRK 242
>RPOD_AERPE (Q9YB53) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 290 Score = 36.6 bits (83), Expect = 0.070 Identities = 31/128 (24%), Positives = 54/128 (42%) Frame = -3 Query: 668 RAIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDP 489 +A AR G GK+H KWSPA+ Y P + + LE + + P V + Sbjct: 155 QAFARLGRGKEHTKWSPASLSVLRYTPILIYDSSKAGDECLE----CLSAYPQVVEALKS 210 Query: 488 VTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNA 309 + +++ T ++ G VE+ + VE+TGA+ +++ A Sbjct: 211 GGKGSLVLEGLRRT---SGLRYCAETACRGAVEVRYDSSNLDLEVESTGALRPEKIVELA 267 Query: 308 ITVLRQKL 285 I L +K+ Sbjct: 268 IRELEEKV 275
>RPOD_SULSO (P95989) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 265 Score = 36.2 bits (82), Expect = 0.092 Identities = 26/125 (20%), Positives = 57/125 (45%) Frame = -3 Query: 656 RKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPVTQQ 477 R G GK+HAK+ P + Y P + I L + V P VF++ + Sbjct: 146 RLGYGKEHAKFIPVSLSVVRYYPKVEI---------LANCEKAVNVCPEGVFELK--DGK 194 Query: 476 VTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVL 297 +++ + + T +E ++ G + I+ ED ++ +E+ G++ +++ A + Sbjct: 195 LSVKNELSCTLCEECLRYCN-----GSIRISFVEDKYILEIESVGSLKPERILLEAGKSI 249 Query: 296 RQKLD 282 +K++ Sbjct: 250 IRKIE 254
>RPOD_HALMA (Q00813) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 259 Score = 34.7 bits (78), Expect = 0.27 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -3 Query: 395 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQK 288 VE++ ++FVF VET G+ T EL++ A+ LR + Sbjct: 214 VEVSDVPNAFVFHVETDGSFTTEELVLRAVETLRDR 249
>RPOA_MANSM (Q65QY0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 33.1 bits (74), Expect = 0.78 Identities = 24/64 (37%), Positives = 31/64 (48%) Frame = -3 Query: 470 IVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQ 291 +VDA Y+ D + EA VE D V +ET GAI E I A T+L + Sbjct: 172 LVDA-CYSPVDRIAYNVEA----ARVEQRTDLDKLVIELETNGAIDPEEAIRRAATILAE 226 Query: 290 KLDA 279 +LDA Sbjct: 227 QLDA 230
>YIDL_ECOLI (P31449) Putative HTH-type transcriptional regulator yidL| Length = 307 Score = 32.7 bits (73), Expect = 1.0 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = -3 Query: 539 KQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEIN 384 +Q W+E +PT + DI PV QQ I + E Y+ E+ + AE + P ++ N Sbjct: 118 EQYWMEFTPTSMMDI-PVGQQSVIYNGE--IYNQELTEVAELITSPEAIKNN 166
>RPOA_VIBVY (Q7MPG4) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 32.7 bits (73), Expect = 1.0 Identities = 28/99 (28%), Positives = 44/99 (44%) Frame = -3 Query: 575 NQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGL 396 N E+ + +E + +V +S + D +VDA Y+ D++ EA Sbjct: 138 NAEIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDA-TYSPVDKIAYAVEA----AR 192 Query: 395 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 279 VE D V +ET G + E I A T+L ++LDA Sbjct: 193 VEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDA 231
>RPOA_VIBVU (Q8DE63) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 32.7 bits (73), Expect = 1.0 Identities = 28/99 (28%), Positives = 44/99 (44%) Frame = -3 Query: 575 NQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGL 396 N E+ + +E + +V +S + D +VDA Y+ D++ EA Sbjct: 138 NAEIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDA-TYSPVDKIAYAVEA----AR 192 Query: 395 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 279 VE D V +ET G + E I A T+L ++LDA Sbjct: 193 VEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDA 231
>RPOD_HALSA (Q9HQJ4) DNA-directed RNA polymerase subunit D (EC 2.7.7.6)| Length = 248 Score = 32.7 bits (73), Expect = 1.0 Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 1/129 (0%) Frame = -3 Query: 665 AIARKGIGKDHAKWSPAATVTFMYEPDIRINQELMETLTLEEKQSWVESSPTKVFDIDPV 486 A A G G+DHAK V + + + + V SP D + Sbjct: 130 ADAVMGHGRDHAKHQGGVAVGYRHLQRVHV----------------VGDSPEYADDDPQM 173 Query: 485 TQQVTIVDAEAYTYDDEVIKKAEAMGKPGL-VEINAKEDSFVFTVETTGAITAYELIMNA 309 + V D E DD PG VEI + +FVF VE+ G++ EL++ A Sbjct: 174 LRGVIEEDDELVPTDD--FDNDLTTRYPGKEVEIEDVDGAFVFHVESDGSMPVEELVLRA 231 Query: 308 ITVLRQKLD 282 + L + D Sbjct: 232 VDTLVDRAD 240
>RPOA_VIBF1 (Q5E889) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 32.3 bits (72), Expect = 1.3 Identities = 28/99 (28%), Positives = 44/99 (44%) Frame = -3 Query: 575 NQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGL 396 N E+ + +E + +V S+ + D +VDA Y+ D++ EA Sbjct: 137 NAEISMRIKVERGRGYVPSTARIHTEEDERPIGRLLVDA-TYSPVDKISYAVEA----AR 191 Query: 395 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 279 VE D V +ET G + E I A T+L ++LDA Sbjct: 192 VEQRTDLDKLVIDMETNGTLDPEEAIRRAATILAEQLDA 230
>RPOA_VIBPA (Q87SZ0) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 32.3 bits (72), Expect = 1.3 Identities = 28/99 (28%), Positives = 44/99 (44%) Frame = -3 Query: 575 NQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGL 396 N E+ + +E + +V +S + D +VDA Y+ D++ EA Sbjct: 138 NAEIAMRIKVERGRGYVPASARIHNEEDERPIGRLLVDA-TYSPVDKIAYAVEA----AR 192 Query: 395 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 279 VE D V +ET G + E I A T+L ++LDA Sbjct: 193 VEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDA 231
>FLAA_AQUPY (P46210) Flagellin| Length = 501 Score = 32.0 bits (71), Expect = 1.7 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = -3 Query: 470 IVDAEAYTYDDEVIKKAEAMGKP-GLVEINAKEDSFVFTVETTGAITAYELIMNAITVLR 294 I+D E+YTYD I A + P G V I D + V T EL M+ +T+ Sbjct: 369 IIDDESYTYDFTGIAGAFGLTSPSGTVGIT---DLYAIDVTTN---EGAELAMDILTIAA 422 Query: 293 QKLDAVR 273 QK+D +R Sbjct: 423 QKVDEIR 429
>RPOA_PASMU (P57941) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 31.6 bits (70), Expect = 2.3 Identities = 23/64 (35%), Positives = 30/64 (46%) Frame = -3 Query: 470 IVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQ 291 +VDA Y+ D + EA VE D V +ET G I E I A T+L + Sbjct: 172 LVDA-CYSPVDRIAYNVEA----ARVEQRTDLDKLVIELETNGTIDPEEAIRRAATILAE 226 Query: 290 KLDA 279 +LDA Sbjct: 227 QLDA 230
>XYLB_HUMAN (O75191) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)| Length = 527 Score = 31.2 bits (69), Expect = 2.9 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -3 Query: 668 RAIARKGIGKDHAK--WSPAATVTFM-YEPDIRINQELMETLTLEEKQSWVESSPT 510 + +A G G+ H W A PD+R++Q+L + ++ + W++SS T Sbjct: 91 QVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTT 146
>RPOA_PHOPR (Q6LV91) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 30.8 bits (68), Expect = 3.8 Identities = 22/64 (34%), Positives = 30/64 (46%) Frame = -3 Query: 470 IVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQ 291 +VDA Y+ D + EA VE D V +ET G + E I A T+L + Sbjct: 172 LVDA-TYSPVDRIAYSVEA----ARVEQRTDLDKLVIDMETNGTLDPEEAIRRAATILAE 226 Query: 290 KLDA 279 +LDA Sbjct: 227 QLDA 230
>RPOA_IDILO (Q5QXV8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 30.8 bits (68), Expect = 3.8 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 19/141 (13%) Frame = -3 Query: 644 GKDHAKWS-------PAATVTFMYEPDIRI------------NQELMETLTLEEKQSWVE 522 GKD A + P F ++ D+ I + EL+ + +E + +V Sbjct: 94 GKDEATLTLNKSGAGPVTAGDFTHDGDVEIVNPEHVICHLTGDYELVMRVKVERGRGYVP 153 Query: 521 SSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTG 342 ++ + D D +VDA +++ + + +A VE D V +ET G Sbjct: 154 AASRQSADDDERPIGRLLVDA-SFSPVERIAYSVDA----ARVEQRTDLDKLVIEMETNG 208 Query: 341 AITAYELIMNAITVLRQKLDA 279 + E I A T+L ++LDA Sbjct: 209 TLDPEEAIRRAATILAEQLDA 229
>RPOA_HAEIN (P43737) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 30.8 bits (68), Expect = 3.8 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = -3 Query: 395 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 279 VE D V +ET GA+ E I A T+L ++LDA Sbjct: 191 VEQRTDLDKLVIELETNGALEPEEAIRRAATILAEQLDA 229
>RPOA_HAEI8 (Q4QM97) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 30.8 bits (68), Expect = 3.8 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = -3 Query: 395 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 279 VE D V +ET GA+ E I A T+L ++LDA Sbjct: 191 VEQRTDLDKLVIELETNGALEPEEAIRRAATILAEQLDA 229
>AMY_BUTFI (P30269) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 976 Score = 30.4 bits (67), Expect = 5.0 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -3 Query: 410 GKPGLVEINAKEDSFVFTVETTGAITAYELIMN 312 G PG V +N + V+TTG ITA+ LI N Sbjct: 734 GWPGTVAVNEGSGWYRADVKTTGEITAFNLIFN 766
>NIFD_METTL (P20620) Nitrogenase molybdenum-iron protein alpha chain (EC| 1.18.6.1) (Nitrogenase component I) (Dinitrogenase) Length = 478 Score = 30.0 bits (66), Expect = 6.6 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Frame = -3 Query: 605 TFMYEPDIRINQE-LMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVI 429 T M E DI E +E +LE + + E+S T ++ P VDA A + Sbjct: 96 TDMQESDIVYGGEKTLEKASLEVMEEFPEASGTFIYTTCPTALIGDNVDAIARNIEKATK 155 Query: 428 KKAEAMGKPGLVEINAKEDSFVFTV 354 K A A+ PG ++ + VF + Sbjct: 156 KPAIAINSPGFCGVSQSKGHHVFNM 180
>YIDR_ECOLI (P31455) Hypothetical protein yidR| Length = 416 Score = 30.0 bits (66), Expect = 6.6 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Frame = -3 Query: 548 LEEKQSWVESSPTKVFDIDPVTQQVT---IVDAEAYTYDDEVIKKAEAMGKPGLVEINAK 378 L +W S VFD+ P T I +T + EVI +A G+V ++ K Sbjct: 25 LTNTNTWTPDSQWLVFDVRPSGASFTGETIERVNIHTGEVEVIYRASQGAHVGVVTVHPK 84 Query: 377 EDSFVF 360 + +VF Sbjct: 85 SEKYVF 90
>CLD11_BOVIN (Q3MHK4) Claudin-11| Length = 207 Score = 30.0 bits (66), Expect = 6.6 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = +3 Query: 348 CFHSEHKAVLLGVDLYQSWLPHGLCFLDHLIVIC 449 C H E V G LY W+ LC + +++C Sbjct: 144 CAHRETTIVSFGYSLYAGWIGAVLCLVGGCVIVC 177
>LEUD2_MANSM (Q65V08) 3-isopropylmalate dehydratase small subunit 2 (EC| 4.2.1.33) (Isopropylmalate isomerase 2) (Alpha-IPM isomerase 2) (IPMI 2) Length = 200 Score = 29.6 bits (65), Expect = 8.6 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 17/130 (13%) Frame = -3 Query: 662 IARKGIG----KDHAKWSPAAT-VTFMYEP---DIRINQEL--------METLTLEEKQS 531 +ARK +G ++HA W+ A M P DI N L + +EE Sbjct: 74 LARKNLGCGSSREHAPWALADYGFKVMIAPSFADIFYNNSLNNHMLPIKLSEQEVEEIFQ 133 Query: 530 WVESSPTKVFDIDPVTQQVTIVDAEAYTYD-DEVIKKAEAMGKPGLVEINAKEDSFVFTV 354 WV ++P K D+D + VT V + Y +D DE + G D+ T+ Sbjct: 134 WVWANPGKKIDVDLEAKTVT-VGEKVYHFDLDEFRRHCLLEGL----------DNIGLTL 182 Query: 353 ETTGAITAYE 324 + AI AYE Sbjct: 183 QHEDAIAAYE 192
>CLD11_PONPY (Q5REK8) Claudin-11| Length = 200 Score = 29.6 bits (65), Expect = 8.6 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = +3 Query: 348 CFHSEHKAVLLGVDLYQSWLPHGLCFLDHLIVIC 449 C H E V G LY W+ LC + +++C Sbjct: 137 CAHRETTIVSFGYSLYAGWIGAVLCLVGGCVILC 170
>PUT4_YEAST (P15380) Proline-specific permease| Length = 627 Score = 29.6 bits (65), Expect = 8.6 Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 8/110 (7%) Frame = -3 Query: 446 YDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAVRXX 267 Y+D + A A GKPG A FV ++ G I I+N +L A Sbjct: 372 YNDPTLVNALAQGKPG-----AGSSPFVIGIQNAG-IKVLPHIING-CILTSAWSAANAF 424 Query: 266 XXXXXXXXXXXXXXXX*PLCLGK--KW------AAVSFFLPCLGPSRLTS 141 P CLG+ KW VSF CL ++S Sbjct: 425 MFASTRSLLTMAQTGQAPKCLGRINKWGVPYVAVGVSFLCSCLAYLNVSS 474
>RPOA_VIBCH (Q9KP08) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 330 Score = 29.6 bits (65), Expect = 8.6 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = -3 Query: 470 IVDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFVFTVETTGAITAYELIMNAITVLRQ 291 +VDA ++ D++ EA VE D V +ET G + E I A T+L + Sbjct: 173 LVDA-TFSPVDKIAYSVEA----ARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAE 227 Query: 290 KLDA 279 +LDA Sbjct: 228 QLDA 231
>RPOA_HAEDU (Q7VKF8) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 329 Score = 29.6 bits (65), Expect = 8.6 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 395 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 279 VE D + +ET G I E I A T+L ++LDA Sbjct: 192 VEQRTDLDKLIIDMETNGTIDPEEAIRRAATILAEQLDA 230
>CLD11_MACFA (Q4R3L1) Claudin-11| Length = 207 Score = 29.6 bits (65), Expect = 8.6 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = +3 Query: 348 CFHSEHKAVLLGVDLYQSWLPHGLCFLDHLIVIC 449 C H E V G LY W+ LC + +++C Sbjct: 144 CAHRETTIVSFGYSLYAGWIGAVLCLVGGCVILC 177
>CLD11_HUMAN (O75508) Claudin-11 (Oligodendrocyte-specific protein)| Length = 207 Score = 29.6 bits (65), Expect = 8.6 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = +3 Query: 348 CFHSEHKAVLLGVDLYQSWLPHGLCFLDHLIVIC 449 C H E V G LY W+ LC + +++C Sbjct: 144 CAHRETTIVSFGYSLYAGWIGAVLCLVGGCVILC 177
>RPOA_SHESP (P74963) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 29.6 bits (65), Expect = 8.6 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 395 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 279 VE D V +ET G + E I A T+L ++LDA Sbjct: 191 VEQRTNLDKLVIDMETNGTLDPEEAIRRAATILAEQLDA 229
>RPOA_PSEHT (Q3IJI6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 328 Score = 29.6 bits (65), Expect = 8.6 Identities = 24/99 (24%), Positives = 44/99 (44%) Frame = -3 Query: 575 NQELMETLTLEEKQSWVESSPTKVFDIDPVTQQVTIVDAEAYTYDDEVIKKAEAMGKPGL 396 N E+ + +E + +V +S D D ++DA +++ + + E+ Sbjct: 137 NSEISMRIRVERGRGYVPASSRLSSDDDERPIGRLLLDA-SFSPVERIAYSVES----AR 191 Query: 395 VEINAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDA 279 VE D + +ET G + E I A T+L ++LDA Sbjct: 192 VEQRTDLDKLIIDMETNGTLDPEEAIRRASTILAEQLDA 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,458,735 Number of Sequences: 219361 Number of extensions: 2020843 Number of successful extensions: 5762 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 5583 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5748 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
