ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22m03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY103680.1| Zea mays PCO080984 mRNA sequence 178 1e-41
2dbj|AK122040.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 133 8e-28
4gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 133 8e-28
5ref|NM_189556.2| Oryza sativa (japonica cultivar-group), mRNA 88 4e-14
6dbj|AK100676.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 4e-14
7dbj|AK061691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 4e-14
8gb|BT018784.1| Zea mays clone EL01N0527D07.d mRNA sequence 86 2e-13
9gb|AY108406.1| Zea mays PCO080983 mRNA sequence 86 2e-13
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
11dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
12dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
13gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence 42 2.1
14gb|AC069559.27| Mus musculus strain C57BL/6J clone rp23-136j2 ma... 42 2.1
15emb|AL356952.18| Human DNA sequence from clone RP11-809M12 on ch... 42 2.1
16emb|AL138997.18| Human DNA sequence from clone RP11-10O23 on chr... 42 2.1
17gb|AC127357.5| Mus musculus BAC clone RP23-103P11 from chromosom... 42 2.1
18gb|AC091042.6| Homo sapiens chromosome 18, clone RP11-563H6, com... 42 2.1
19emb|CR390310.1| Gallus gallus finished cDNA, clone ChEST234p17 42 2.1
20dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
21gb|AE009707.1| Brucella melitensis 16M chromosome II, section 69... 42 2.1
22dbj|AP004085.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
23gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 42 2.1
24dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
25dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
26emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II... 42 2.1
27gb|AC069563.28| Mus musculus strain C57BL/6J chromosome 9 clone ... 42 2.1
28gb|AC101684.13| Mus musculus chromosome 1, clone RP23-187I13, co... 40 8.4
29gb|AC148114.8| Mus musculus chromosome 8, clone RP24-134B6, comp... 40 8.4
30gb|AY747608.1| Trypanosoma cruzi VIPER retroelement putative GAG... 40 8.4
31gb|AC157597.4| Mus musculus BAC clone RP23-231O9 from chromosome... 40 8.4
32emb|AL391316.7| Human DNA sequence from clone XX-YM901F10 on chr... 40 8.4
33gb|AC104574.4| Homo sapiens chromosome 15, clone RP11-259A24, co... 40 8.4
34gb|AC026118.17| Homo sapiens 3 BAC RP11-67F24 (Roswell Park Canc... 40 8.4
35gb|AC107908.3| Homo sapiens chromosome 15, clone CTD1-2291N1, co... 40 8.4
36gb|AC097712.3| Homo sapiens BAC clone RP11-216H12 from 4, comple... 40 8.4
37gb|AC160981.2| Mus musculus BAC clone RP23-363D11 from chromosom... 40 8.4
38gb|AF303741.1|AF303741 Chilo iridescent virus complete genome 40 8.4
39dbj|AK016006.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 8.4
40dbj|AK015811.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 8.4
41gb|AF324829.1|AF324829 Trypanosoma cruzi serine-alanine-and prol... 40 8.4
42gb|AC154183.2| Mus musculus BAC clone RP23-474E16 from chromosom... 40 8.4
43gb|U16295.1|TCU16295 Trypanosoma cruzi clone C6 interspersed DNA... 40 8.4
44gb|AC079171.22| Homo sapiens X BAC RP11-791M20 (Roswell Park Can... 40 8.4
45gb|AC145731.4| Mus musculus BAC clone RP24-499N24 from 9, comple... 40 8.4
46gb|AC124747.3| Mus musculus BAC clone RP23-243O9 from 12, comple... 40 8.4
47ref|NM_029061.1| Mus musculus coiled-coil domain containing 7 (C... 40 8.4
48gb|AC087899.40| Mus musculus strain C57BL/6J chromosome 19 clone... 40 8.4
49gb|AC169037.4| Mus musculus BAC clone RP23-85E20 from chromosome... 40 8.4
50gb|AY854152.1| Mus musculus testis-specific antigen mRNA, comple... 40 8.4
51emb|Y12774.1|TCREPSIRE Trypanosoma cruzi partial mRNA for hypoth... 40 8.4
52emb|Y09442.1|TCY09442 T.cruzi DNA for VIPER element 40 8.4
53gb|M28886.1|TRBRPSEU T.cruzi 24S-alpha rRNA pseudogene, complete... 40 8.4 
>gb|AY103680.1| Zea mays PCO080984 mRNA sequence
          Length = 1931

 Score =  178 bits (90), Expect = 1e-41
 Identities = 168/194 (86%)
 Strand = Plus / Minus

                                                                        
Query: 407  ggtttggtcatgatgggtttgcagaacctgtcaagtgcttcagccttcttctttatgtca 466
            ||||| |||||||| || ||||||||||| ||||||| |||||| |||||||| | ||||
Sbjct: 1454 ggtttcgtcatgatcggcttgcagaacctatcaagtgtttcagctttcttcttaaggtca 1395

                                                                        
Query: 467  gaaacaaggaggacaggattagcatgcttcggtagagcatcttgctgctgctttttctcc 526
            | | ||||||| || | |||||||||||| || |||||||| ||||||||||||||||| 
Sbjct: 1394 gcagcaaggagtaccgaattagcatgctttggcagagcatcctgctgctgctttttctct 1335

                                                                        
Query: 527  attagccaggtctctgcatccgagcactcattaacaaccttttgcttctctgatatgtct 586
            |||||||| |||||||| ||||| ||||||||||  |||||| |||| ||||| ||||||
Sbjct: 1334 attagccaagtctctgcttccgaacactcattaatgacctttcgcttttctgacatgtct 1275

                          
Query: 587  atgtgatcaaactt 600
            ||||| ||||||||
Sbjct: 1274 atgtgttcaaactt 1261
to top
>dbj|AK122040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113E02, full
            insert sequence
          Length = 3137

 Score =  139 bits (70), Expect = 1e-29
 Identities = 142/166 (85%)
 Strand = Plus / Minus

                                                                        
Query: 432  acctgtcaagtgcttcagccttcttctttatgtcagaaacaaggaggacaggattagcat 491
            ||||||||||||||||||| |||||||| |||||||| |  | ||||||||||| |||||
Sbjct: 2503 acctgtcaagtgcttcagctttcttcttcatgtcagatattaagaggacaggatcagcat 2444

                                                                        
Query: 492  gcttcggtagagcatcttgctgctgctttttctccattagccaggtctctgcatccgagc 551
            |||| ||||||||||| |||||||||| |||||| ||||||||| |||| || ||||| |
Sbjct: 2443 gctttggtagagcatcctgctgctgctgtttctctattagccagatctcggcctccgaac 2384

                                                          
Query: 552  actcattaacaaccttttgcttctctgatatgtctatgtgatcaaa 597
            ||||||  |  ||||| || || ||||| ||||| |||||||||||
Sbjct: 2383 actcatccaggaccttctgtttttctgacatgtcgatgtgatcaaa 2338
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  133 bits (67), Expect = 8e-28
 Identities = 112/127 (88%)
 Strand = Plus / Minus

                                                                           
Query: 431     aacctgtcaagtgcttcagccttcttctttatgtcagaaacaaggaggacaggattagca 490
               |||||||||||||||||||| |||||||| |||||||| |  | ||||||||||| ||||
Sbjct: 4825148 aacctgtcaagtgcttcagctttcttcttcatgtcagatattaagaggacaggatcagca 4825089

                                                                           
Query: 491     tgcttcggtagagcatcttgctgctgctttttctccattagccaggtctctgcatccgag 550
               ||||| ||||||||||| |||||||||| |||||| ||||||||| |||| || ||||| 
Sbjct: 4825088 tgctttggtagagcatcctgctgctgctgtttctctattagccagatctcggcctccgaa 4825029

                      
Query: 551     cactcat 557
               |||||||
Sbjct: 4825028 cactcat 4825022
to top
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
             complete sequence
          Length = 187956

 Score =  133 bits (67), Expect = 8e-28
 Identities = 112/127 (88%)
 Strand = Plus / Minus

                                                                         
Query: 431   aacctgtcaagtgcttcagccttcttctttatgtcagaaacaaggaggacaggattagca 490
             |||||||||||||||||||| |||||||| |||||||| |  | ||||||||||| ||||
Sbjct: 97556 aacctgtcaagtgcttcagctttcttcttcatgtcagatattaagaggacaggatcagca 97497

                                                                         
Query: 491   tgcttcggtagagcatcttgctgctgctttttctccattagccaggtctctgcatccgag 550
             ||||| ||||||||||| |||||||||| |||||| ||||||||| |||| || ||||| 
Sbjct: 97496 tgctttggtagagcatcctgctgctgctgtttctctattagccagatctcggcctccgaa 97437

                    
Query: 551   cactcat 557
             |||||||
Sbjct: 97436 cactcat 97430
to top
>ref|NM_189556.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3139

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 422  ggtttgcagaacctgtcaagtgcttcagccttcttctttatgtcagaaacaaggaggaca 481
            |||||||||||||||||||  | ||| ||||| |||||||  ||||||   || ||||||
Sbjct: 2547 ggtttgcagaacctgtcaaccgtttcggcctttttctttaaatcagaagagagtaggaca 2488

                                                        
Query: 482  ggattagcatgcttcggtagagcatcttgctgctgctttttctc 525
            || |||||||||||||| |||||||||||||||||  |||||||
Sbjct: 2487 gggttagcatgcttcggcagagcatcttgctgctgtattttctc 2444
to top
>dbj|AK100676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113C17, full
            insert sequence
          Length = 3139

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                        
Query: 422  ggtttgcagaacctgtcaagtgcttcagccttcttctttatgtcagaaacaaggaggaca 481
            |||||||||||||||||||  | ||| ||||| |||||||  ||||||   || ||||||
Sbjct: 2547 ggtttgcagaacctgtcaaccgtttcggcctttttctttaaatcagaagagagtaggaca 2488

                                                        
Query: 482  ggattagcatgcttcggtagagcatcttgctgctgctttttctc 525
            || |||||||||||||| |||||||||||||||||  |||||||
Sbjct: 2487 gggttagcatgcttcggcagagcatcttgctgctgtattttctc 2444
to top
>dbj|AK061691.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C02, full
           insert sequence
          Length = 1144

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                       
Query: 422 ggtttgcagaacctgtcaagtgcttcagccttcttctttatgtcagaaacaaggaggaca 481
           |||||||||||||||||||  | ||| ||||| |||||||  ||||||   || ||||||
Sbjct: 617 ggtttgcagaacctgtcaaccgtttcggcctttttctttaaatcagaagagagtaggaca 558

                                                       
Query: 482 ggattagcatgcttcggtagagcatcttgctgctgctttttctc 525
           || |||||||||||||| |||||||||||||||||  |||||||
Sbjct: 557 gggttagcatgcttcggcagagcatcttgctgctgtattttctc 514
to top
>gb|BT018784.1| Zea mays clone EL01N0527D07.d mRNA sequence
          Length = 2082

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                   
Query: 405  ttggtttggtcatgatgggtttgcagaacctgtcaagtgcttcagccttcttctt 459
            ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 1614 ttggtttagtcatgatcggtttgcagaacctgtcaagtgcttcagctttcttctt 1560
to top
>gb|AY108406.1| Zea mays PCO080983 mRNA sequence
          Length = 1289

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                  
Query: 405 ttggtttggtcatgatgggtttgcagaacctgtcaagtgcttcagccttcttctt 459
           ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 792 ttggtttagtcatgatcggtttgcagaacctgtcaagtgcttcagctttcttctt 738
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                 
Query: 476     aggacaggattagcatgcttcggtagagcatcttgctgctgctttttctc 525
               |||||||| |||||||||||||| |||||||||||||||||  |||||||
Sbjct: 4257850 aggacagggttagcatgcttcggcagagcatcttgctgctgtattttctc 4257801
to top
>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1174_D05
          Length = 128525

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                               
Query: 476   aggacaggattagcatgcttcggtagagcatcttgctgctgctttttctc 525
             |||||||| |||||||||||||| |||||||||||||||||  |||||||
Sbjct: 95817 aggacagggttagcatgcttcggcagagcatcttgctgctgtattttctc 95768
to top
>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0666G04
          Length = 141983

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                               
Query: 476   aggacaggattagcatgcttcggtagagcatcttgctgctgctttttctc 525
             |||||||| |||||||||||||| |||||||||||||||||  |||||||
Sbjct: 37620 aggacagggttagcatgcttcggcagagcatcttgctgctgtattttctc 37571
to top
>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence
          Length = 1207381

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 447    cagccttcttctttatgtcag 467
              |||||||||||||||||||||
Sbjct: 530338 cagccttcttctttatgtcag 530318
to top
>gb|AC069559.27| Mus musculus strain C57BL/6J clone rp23-136j2 map 9, complete sequence
          Length = 185365

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 573    tctctgatatgtctatgtgat 593
              |||||||||||||||||||||
Sbjct: 178291 tctctgatatgtctatgtgat 178311
to top
>emb|AL356952.18| Human DNA sequence from clone RP11-809M12 on chromosome 10 Contains a
             novel gene and a CpG island, complete sequence
          Length = 129950

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 85    aaacactgcagaaactctcca 105
             |||||||||||||||||||||
Sbjct: 94033 aaacactgcagaaactctcca 94053
to top
>emb|AL138997.18| Human DNA sequence from clone RP11-10O23 on chromosome 13 Contains a
              hepatocyte nuclear factor 4 alpha (HNF4A) pseudogene,
              complete sequence
          Length = 172342

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 85     aaacactgcagaaactctcca 105
              |||||||||||||||||||||
Sbjct: 159807 aaacactgcagaaactctcca 159787
to top
>gb|AC127357.5| Mus musculus BAC clone RP23-103P11 from chromosome 3, complete sequence
          Length = 220032

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 522    tctccattagccaggtctctg 542
              |||||||||||||||||||||
Sbjct: 117076 tctccattagccaggtctctg 117096
to top
>gb|AC091042.6| Homo sapiens chromosome 18, clone RP11-563H6, complete sequence
          Length = 149173

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 452   ttcttctttatgtcagaaaca 472
             |||||||||||||||||||||
Sbjct: 89809 ttcttctttatgtcagaaaca 89829
to top
>emb|CR390310.1| Gallus gallus finished cDNA, clone ChEST234p17
          Length = 1645

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 129 gtatgaaaacagccattcctt 149
           |||||||||||||||||||||
Sbjct: 495 gtatgaaaacagccattcctt 475
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 204      tctcctcagatcgacacctct 224
                |||||||||||||||||||||
Sbjct: 23968123 tctcctcagatcgacacctct 23968143



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 204     tctcctcagatcgacacctct 224
               |||||||||||||||||||||
Sbjct: 6273780 tctcctcagatcgacacctct 6273760
to top
>gb|AE009707.1| Brucella melitensis 16M chromosome II, section 69 of 107 of the
            complete sequence
          Length = 9807

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 447  cagccttcttctttatgtcag 467
            |||||||||||||||||||||
Sbjct: 1371 cagccttcttctttatgtcag 1391
to top
>dbj|AP004085.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1267_F10
          Length = 162669

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   tctcctcagatcgacacctct 224
             |||||||||||||||||||||
Sbjct: 71167 tctcctcagatcgacacctct 71147
to top
>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence
          Length = 1162204

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 447    cagccttcttctttatgtcag 467
              |||||||||||||||||||||
Sbjct: 683960 cagccttcttctttatgtcag 683980
to top
>dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1476_F05
          Length = 125426

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 204  tctcctcagatcgacacctct 224
            |||||||||||||||||||||
Sbjct: 3161 tctcctcagatcgacacctct 3181
to top
>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0496E03
          Length = 138622

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 204    tctcctcagatcgacacctct 224
              |||||||||||||||||||||
Sbjct: 102087 tctcctcagatcgacacctct 102107
to top
>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence,
              strain 2308
          Length = 1156948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 447    cagccttcttctttatgtcag 467
              |||||||||||||||||||||
Sbjct: 683948 cagccttcttctttatgtcag 683968
to top
>gb|AC069563.28| Mus musculus strain C57BL/6J chromosome 9 clone rp23-477j18, complete
              sequence
          Length = 188584

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 573    tctctgatatgtctatgtgat 593
              |||||||||||||||||||||
Sbjct: 179409 tctctgatatgtctatgtgat 179389
to top
>gb|AC101684.13| Mus musculus chromosome 1, clone RP23-187I13, complete sequence
          Length = 227440

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    tgctcacccacatgctcatc 280
              ||||||||||||||||||||
Sbjct: 100132 tgctcacccacatgctcatc 100113
to top
>gb|AC148114.8| Mus musculus chromosome 8, clone RP24-134B6, complete sequence
          Length = 155465

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 511   ctgctgctttttctccatta 530
             ||||||||||||||||||||
Sbjct: 15201 ctgctgctttttctccatta 15220
to top
>gb|AY747608.1| Trypanosoma cruzi VIPER retroelement putative GAG protein (GAG) gene,
            complete cds, and integrase (INT) and putative reverse
            transcriptase/RNAseH (RT-RNAseH) pseudogenes, partial cds
          Length = 4526

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 372  agcggcggggtcttgtggtt 391
            ||||||||||||||||||||
Sbjct: 4303 agcggcggggtcttgtggtt 4322
to top
>gb|AC157597.4| Mus musculus BAC clone RP23-231O9 from chromosome 16, complete sequence
          Length = 171299

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 590    tgatcaaactttttggtcac 609
              ||||||||||||||||||||
Sbjct: 129832 tgatcaaactttttggtcac 129813
to top
>emb|AL391316.7| Human DNA sequence from clone XX-YM901F10 on chromosome 20 Contains
             ESTs, GSSs and STSs, complete sequence
          Length = 49377

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 511   ctgctgctttttctccatta 530
             ||||||||||||||||||||
Sbjct: 44986 ctgctgctttttctccatta 45005
to top
>gb|AC104574.4| Homo sapiens chromosome 15, clone RP11-259A24, complete sequence
          Length = 152130

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 447  cagccttcttctttatgtcagaaacaag 474
            |||||||||||||| ||||||| |||||
Sbjct: 2580 cagccttcttctttgtgtcagatacaag 2553
to top
>gb|AC026118.17| Homo sapiens 3 BAC RP11-67F24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 176108

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 505    atcttgctgctgctttttct 524
              ||||||||||||||||||||
Sbjct: 117420 atcttgctgctgctttttct 117439
to top
>gb|AC107908.3| Homo sapiens chromosome 15, clone CTD1-2291N1, complete sequence
          Length = 132718

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 447    cagccttcttctttatgtcagaaacaag 474
              |||||||||||||| ||||||| |||||
Sbjct: 112366 cagccttcttctttgtgtcagatacaag 112339
to top
>gb|AC097712.3| Homo sapiens BAC clone RP11-216H12 from 4, complete sequence
          Length = 184520

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 520   tttctccattagccaggtct 539
             ||||||||||||||||||||
Sbjct: 96352 tttctccattagccaggtct 96333
to top
>gb|AC160981.2| Mus musculus BAC clone RP23-363D11 from chromosome 9, complete sequence
          Length = 175606

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 512   tgctgctttttctccattag 531
             ||||||||||||||||||||
Sbjct: 56055 tgctgctttttctccattag 56074
to top
>gb|AF303741.1|AF303741 Chilo iridescent virus complete genome
          Length = 212482

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   tttgattgttcttctggtgt 343
             ||||||||||||||||||||
Sbjct: 76801 tttgattgttcttctggtgt 76782
to top
>dbj|AK016006.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930540C21 product:hypothetical protein,
           full insert sequence
          Length = 1307

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 ctgctgctttttctccatta 530
           ||||||||||||||||||||
Sbjct: 728 ctgctgctttttctccatta 709
to top
>dbj|AK015811.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930517G15 product:hypothetical protein,
           full insert sequence
          Length = 1504

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 ctgctgctttttctccatta 530
           ||||||||||||||||||||
Sbjct: 710 ctgctgctttttctccatta 691
to top
>gb|AF324829.1|AF324829 Trypanosoma cruzi serine-alanine-and proline-rich protein (sap)
           gene, complete cds; and putative ATPase gene, partial
           cds
          Length = 2382

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 372 agcggcggggtcttgtggtt 391
           ||||||||||||||||||||
Sbjct: 250 agcggcggggtcttgtggtt 269
to top
>gb|AC154183.2| Mus musculus BAC clone RP23-474E16 from chromosome 17, complete
             sequence
          Length = 181773

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    gaaactctccatgttctact 114
             ||||||||||||||||||||
Sbjct: 59334 gaaactctccatgttctact 59315
to top
>gb|U16295.1|TCU16295 Trypanosoma cruzi clone C6 interspersed DNA element
          Length = 1433

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 372  agcggcggggtcttgtggtt 391
            ||||||||||||||||||||
Sbjct: 1325 agcggcggggtcttgtggtt 1344
to top
>gb|AC079171.22| Homo sapiens X BAC RP11-791M20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 147895

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    tatcggtgtccatttgctca 266
              ||||||||||||||||||||
Sbjct: 144817 tatcggtgtccatttgctca 144836
to top
>gb|AC145731.4| Mus musculus BAC clone RP24-499N24 from 9, complete sequence
          Length = 211847

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 512  tgctgctttttctccattag 531
            ||||||||||||||||||||
Sbjct: 3990 tgctgctttttctccattag 3971
to top
>gb|AC124747.3| Mus musculus BAC clone RP23-243O9 from 12, complete sequence
          Length = 208779

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 560   acaaccttttgcttctctga 579
             ||||||||||||||||||||
Sbjct: 93968 acaaccttttgcttctctga 93987
to top
>ref|NM_029061.1| Mus musculus coiled-coil domain containing 7 (Ccdc7), mRNA
          Length = 1504

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 ctgctgctttttctccatta 530
           ||||||||||||||||||||
Sbjct: 710 ctgctgctttttctccatta 691
to top
>gb|AC087899.40| Mus musculus strain C57BL/6J chromosome 19 clone rp23-170m6, complete
              sequence
          Length = 194291

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 590    tgatcaaactttttggtcac 609
              ||||||||||||||||||||
Sbjct: 148036 tgatcaaactttttggtcac 148055
to top
>gb|AC169037.4| Mus musculus BAC clone RP23-85E20 from chromosome 16, complete sequence
          Length = 184591

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 590   tgatcaaactttttggtcac 609
             ||||||||||||||||||||
Sbjct: 51248 tgatcaaactttttggtcac 51229
to top
>gb|AY854152.1| Mus musculus testis-specific antigen mRNA, complete cds
          Length = 1554

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 ctgctgctttttctccatta 530
           ||||||||||||||||||||
Sbjct: 760 ctgctgctttttctccatta 741
to top
>emb|Y12774.1|TCREPSIRE Trypanosoma cruzi partial mRNA for hypothetical protein derived
           from Viper element
          Length = 734

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 372 agcggcggggtcttgtggtt 391
           ||||||||||||||||||||
Sbjct: 657 agcggcggggtcttgtggtt 676
to top
>emb|Y09442.1|TCY09442 T.cruzi DNA for VIPER element
          Length = 2359

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 372  agcggcggggtcttgtggtt 391
            ||||||||||||||||||||
Sbjct: 2133 agcggcggggtcttgtggtt 2152
to top
>gb|M28886.1|TRBRPSEU T.cruzi 24S-alpha rRNA pseudogene, complete cds
          Length = 1715

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 372  agcggcggggtcttgtggtt 391
            ||||||||||||||||||||
Sbjct: 1628 agcggcggggtcttgtggtt 1609


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,342,583
Number of Sequences: 3902068
Number of extensions: 6342583
Number of successful extensions: 108801
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108574
Number of HSP's gapped (non-prelim): 227
length of query: 614
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 591
effective length of database: 17,143,297,704
effective search space: 10131688943064
effective search space used: 10131688943064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top