| Clone Name | rbags23b02 |
|---|---|
| Clone Library Name | barley_pub |
>THN_BRARP (Q9SBK8) Thionin precursor [Contains: Thionin; Acidic protein]| Length = 133 Score = 57.8 bits (138), Expect = 3e-08 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 10/133 (7%) Frame = -2 Query: 590 KTLAMILLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYISN 411 KT+ + ++++ LV + Q +A CC Y CR + ++++ C +S I + Sbjct: 4 KTVILGVIIMSLVMAQN--QVEAKICCPRTIDRNIYNACRL-TGASMTNCANLSGCKIVS 60 Query: 410 DAGTECKSGYID--IEKVSLQVN-YCKLGCTASLCNKVTPSGND-------AMERCTSEC 261 GT C GY ++ VN YCKLGC +S+C +T N A+ +CT+ C Sbjct: 61 --GTTCPPGYTHDILQNYGDAVNEYCKLGCASSVCGALTTLKNSMQVNCEGAVSQCTNAC 118 Query: 260 HDLCTKNGVEIAQ 222 + CTK ++ + Sbjct: 119 SNFCTKGSAKVVE 131
>THN23_ARATH (Q8VZK8) Probable thionin-2.3 precursor [Contains: Probable| thionin-2.3; Acidic protein] Length = 135 Score = 57.8 bits (138), Expect = 3e-08 Identities = 46/136 (33%), Positives = 63/136 (46%), Gaps = 11/136 (8%) Frame = -2 Query: 590 KTLAMILLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYISN 411 KT+ +LV+GLV + +AQ + CC + + DC S+ + C +G Sbjct: 4 KTVIFSVLVMGLVISQIQVEAQKT-CCPSQSTRKEFEDCI--SEGNLQILCSAESGCRDT 60 Query: 410 DAGTECKSG--YIDIEKVSLQVN-YCKLGCTASLC------NKVTPSG--NDAMERCTSE 264 G C SG Y + VN YCKLGC +SLC K+ SG N A+ERCT Sbjct: 61 YVGY-CPSGFPYGSLTNSGDVVNVYCKLGCVSSLCGALTSLQKLDTSGKVNVAVERCTKA 119 Query: 263 CHDLCTKNGVEIAQVV 216 C +CTK + V Sbjct: 120 CSTICTKGSKTAVETV 135
>THN22_ARATH (Q42597) Thionin-2.2 precursor [Contains: Thionin-2.2; Acidic| protein] Length = 134 Score = 56.2 bits (134), Expect = 8e-08 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 11/126 (8%) Frame = -2 Query: 590 KTLAMILLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYISN 411 KT+ LL++ LV + Q +A CC D YF C S S+ + N Sbjct: 4 KTVISSLLIMSLVLAQI--QVEAKICCPTKDDRSVYFVCML---SVSSQFYCLLKSKCKN 58 Query: 410 DAGTECKSGYID--IEKVSLQVN-YCKLGCTASLCNKVTPSGN--------DAMERCTSE 264 + T C GY + +E VN YCKLGC +S+C +T N +A+E+CT Sbjct: 59 TSQTICPPGYTNDILENSGDAVNEYCKLGCASSVCGALTTLQNFDTSKVLSEAVEQCTKA 118 Query: 263 CHDLCT 246 C +CT Sbjct: 119 CSSVCT 124
>THN24_ARATH (Q9C8D6) Probable thionin-2.4 precursor [Contains: Probable| thionin-2.4; Acidic protein] Length = 134 Score = 46.2 bits (108), Expect = 8e-05 Identities = 42/136 (30%), Positives = 58/136 (42%), Gaps = 14/136 (10%) Frame = -2 Query: 590 KTLAMILLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYISN 411 KTL + +L++ L + Q A+ CC + + Y C S S S IS Sbjct: 4 KTLIVSVLIMSLFMAQN--QVDANICCPSIQARTFYNACLFAVGSPSSCIRNSSCLDISE 61 Query: 410 DAGTECKSGYID--IEKVSLQVN-YCKLGCTASLCNKVT--------PSGNDAMERCTSE 264 C GY + +E V YCKLGC +S+C +T N +E+CT Sbjct: 62 ST---CPRGYTNDILENTGDAVTEYCKLGCVSSVCGALTILQNSDASEIVNGEVEKCTMA 118 Query: 263 CHDLCTK---NGVEIA 225 C +CTK N VE A Sbjct: 119 CSTVCTKGSMNAVENA 134
>THN1_WHEAT (P01544) Alpha-1-purothionin precursor (Purothionin A-II)| [Contains: Alpha-1-purothionin; Acidic protein] (Fragment) Length = 126 Score = 43.9 bits (102), Expect = 4e-04 Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 14/122 (11%) Frame = -2 Query: 572 LLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYISNDAGTEC 393 LL+LGLV + Q + CC Y CRA+ + C GV IS+ G C Sbjct: 2 LLILGLVLEQL--QVEGKSCCRSTLGRNCYNLCRARGAQKL--CAGVCRCKISS--GLSC 55 Query: 392 KSGYIDIEKVSLQVN--------YCKLGCTASLCNKVTPSGND------AMERCTSECHD 255 G+ K++L+ N YC LGC +S+C+ + + D +E C C Sbjct: 56 PKGF---PKLALESNSDEPDTIEYCNLGCRSSVCDYMVNAAADDEEMKLYVENCADACVS 112 Query: 254 LC 249 C Sbjct: 113 FC 114
>THNB_HORVU (P21742) Beta-hordothionin precursor [Contains: Beta-hordothionin;| Acidic protein] Length = 136 Score = 43.1 bits (100), Expect = 7e-04 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 11/131 (8%) Frame = -2 Query: 608 MRGNNVKTLAMILLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVS 429 M +K + + LL+LGLV +E Q + CC Y CR + + C + Sbjct: 1 MGSKGLKGVMVCLLILGLV-LEHVQ-VEGKSCCRSTLGRNCYNLCRVRG---AQKLCA-N 54 Query: 428 AGYISNDAGTECKSGYIDIEKVSLQ-----VNYCKLGCTASLCNKVTPSGND------AM 282 A +G +C S + + VS ++YC LGC AS+C+ + + D + Sbjct: 55 ACRCKLTSGLKCPSSFPKLALVSNSDEPDTIDYCNLGCRASMCDYMVNAAADDEEMKLYV 114 Query: 281 ERCTSECHDLC 249 E C+ C + C Sbjct: 115 EHCSDACVNFC 125
>THNA_HORVU (P01545) Alpha-hordothionin precursor (Purothionin II) [Contains:| Alpha-hordothionin; Acidic protein] Length = 127 Score = 42.7 bits (99), Expect = 0.001 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 11/119 (9%) Frame = -2 Query: 572 LLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYISNDAGTEC 393 LL+LGLV + Q + CC Y CR + + C GV +++ +C Sbjct: 4 LLILGLVLEQ--VQVEGKSCCRSTLGRNCYNLCRVRGAQKL--CAGVCRCKLTSSG--KC 57 Query: 392 KSGYIDIEKVSLQ-----VNYCKLGCTASLCNKVTPSGND------AMERCTSECHDLC 249 +G+ + VS V YC LGC AS+C+ + + D +E C C + C Sbjct: 58 PTGFPKLALVSNSDEPDTVKYCNLGCRASMCDYMVNAAADDEEMKLYLENCGDACVNFC 116
>THN3_VISAL (P01538) Viscotoxin A3 precursor [Contains: Viscotoxin A3; Acidic| protein] Length = 111 Score = 42.4 bits (98), Expect = 0.001 Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 1/116 (0%) Frame = -2 Query: 593 VKTLAMILLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYIS 414 V+ +++LLVL L A+ Q ++ CC + Y CR + + C +S I Sbjct: 4 VRGSSLVLLVLLLGAL-LVSQVESKSCCPNTTGRNIYNACRL-TGAPRPTCAKLSGCKII 61 Query: 413 NDAGTECKSGYIDIEKVSLQVNYCKLGCTASLCNKVTPSGNDA-MERCTSECHDLC 249 + G+ C S Y YC LGC +S C T S DA RC + C DLC Sbjct: 62 S--GSTCPSDYPKF--------YCTLGCESSQC--ATNSNGDAEAVRCKTACSDLC 105
>THNB_WHEAT (P01543) Purothionin A-1 precursor (Purothionin A-I)| (Beta-purothionin) [Contains: Purothionin A-1; Acidic protein] Length = 136 Score = 42.4 bits (98), Expect = 0.001 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 10/130 (7%) Frame = -2 Query: 608 MRGNNVKTLAMILLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVS 429 M +K + + LL+LGLV + Q + CC Y CRA+ + C V Sbjct: 1 MGSKGLKGVMVCLLILGLVLEQ--VQVEGKSCCKSTLGRNCYNLCRARGAQKL--CANVC 56 Query: 428 AGYISNDAGTECKSGYIDIEKVSLQVN--------YCKLGCTASLCNKVTPSGND--AME 279 +++ G C D K+ L+ N YC LGC +SLC+ + + D M+ Sbjct: 57 RCKLTS--GLSCPK---DFPKLVLESNSDEPDTMEYCNLGCRSSLCDYIVNAAADDEEMK 111 Query: 278 RCTSECHDLC 249 +C D C Sbjct: 112 LYVEQCGDAC 121
>THN21_ARATH (Q42596) Thionin-2.1 precursor [Contains: Thionin-2.1; Acidic| protein] Length = 134 Score = 41.2 bits (95), Expect = 0.003 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 11/130 (8%) Frame = -2 Query: 590 KTLAMILLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYISN 411 + L + LL++ LV + Q +A CC + Y CR + C VS G ++ Sbjct: 4 RILILSLLIMSLVMAQ--VQVEAKICCPSNQARNGYSVCRIRFSK--GRCMQVS-GCQNS 58 Query: 410 DAGTECKSGYID--IEKVSLQVN-YCKLGCTASLCNKVTPSGND--------AMERCTSE 264 D C G+++ +E + N +CKLGC S+C + N A E+C Sbjct: 59 DT---CPRGWVNAILENSADATNEHCKLGCETSVCGAMNTLQNSDASEIVNGASEQCAKG 115 Query: 263 CHDLCTKNGV 234 C CTK+ V Sbjct: 116 CSIFCTKSYV 125
>THN2_WHEAT (P32032) Alpha-2-purothionin precursor [Contains:| Alpha-2-purothionin; Acidic protein] Length = 136 Score = 40.4 bits (93), Expect = 0.005 Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 14/134 (10%) Frame = -2 Query: 608 MRGNNVKTLAMILLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSD----STVSEC 441 M +K + + LL+LGLV + Q + CC Y CR++ STV C Sbjct: 1 MGSKGLKGVMVCLLILGLVLEQ--VQVEGKSCCRTTLGRNCYNLCRSRGAQKLCSTVCRC 58 Query: 440 CGVSAGYISNDAGTECKSGYIDIEKVSLQVN--------YCKLGCTASLCNKVTPSGND- 288 S G C G+ K++L+ N YC LGC +S+C+ + + D Sbjct: 59 KLTS--------GLSCPKGF---PKLALESNSDEPDTIEYCNLGCRSSVCDYMVNAAADD 107 Query: 287 -AMERCTSECHDLC 249 M+ C D C Sbjct: 108 EEMKLYVENCGDAC 121
>THN5_HORVU (P09617) Leaf-specific thionin precursor [Contains: Leaf-specific| thionin; Acidic protein] Length = 137 Score = 38.1 bits (87), Expect = 0.023 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 10/139 (7%) Frame = -2 Query: 596 NVKTLAMILLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYI 417 ++K++ + +L+LGLV + Q +A CC + Y CR S C + G Sbjct: 6 SIKSVVICVLILGLVLEQ--VQVEAKSCCKNTTGRNCYNACRFAGGSR--PVCATACG-C 60 Query: 416 SNDAGTECKSGY--IDIEKVSLQVN---YCKLGCTASLCNKV--TPSGNDA---MERCTS 267 +G C Y +++ S + N YC +GC S+C+ + G + M C++ Sbjct: 61 KIISGPTCPRDYPKLNLLPESGEPNATEYCTIGCRTSVCDNMDNVSRGQEMKFDMGLCSN 120 Query: 266 ECHDLCTKNGVEIAQVVVA 210 C C N E+ Q V A Sbjct: 121 ACARFC--NDGEVIQSVEA 137
>THNB_VISAL (P08943) Viscotoxin B precursor [Contains: Viscotoxin B; Acidic| protein] (Fragment) Length = 103 Score = 37.4 bits (85), Expect = 0.039 Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 4/100 (4%) Frame = -2 Query: 536 QQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYISNDAGTECKSGYIDIEKVSL 357 + ++ CC + Y CR S E C +G A T C S Y Sbjct: 2 RNVESKSCCPNTTGRNIYNTCRLGGGSR--ERCASLSGCKIISAST-CPSDYPKF----- 53 Query: 356 QVNYCKLGCTASLCNKVTPSGNDAME----RCTSECHDLC 249 YC LGC +S C +T N ++ RC + C +LC Sbjct: 54 ---YCTLGCQSSKCASITTPPNSEVDAEAVRCKAACSNLC 90
>THN5_WHEAT (Q05806) Type-5 thionin precursor [Contains: Type-5 thionin (Type V| thionin); Acidic protein] Length = 131 Score = 36.6 bits (83), Expect = 0.066 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 12/127 (9%) Frame = -2 Query: 593 VKTLAMILLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSEC-----CGVS 429 +++ + LLVLGLV + Q + C + V + C STV +C C + Sbjct: 8 LESAIVCLLVLGLVLEQ--VQVEGVDCGANPFKVACFNSCLL-GPSTVFQCADFCACRLP 64 Query: 428 AGYISNDAGTECKSGYIDIEKVSLQVNYCKLGCTASLCNKVTPSGNDAME-------RCT 270 AG S + E + + YC LGC +S+C+ + + +++ E RC Sbjct: 65 AGLASVRSSDEPNA-----------IEYCSLGCRSSVCDNMINTADNSTEEMKLYVKRCG 113 Query: 269 SECHDLC 249 C C Sbjct: 114 VACDSFC 120
>THN7_HORVU (Q42838) Thionin BTH7 precursor [Contains: Thionin BTH7; Acidic| protein] Length = 137 Score = 36.6 bits (83), Expect = 0.066 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 10/139 (7%) Frame = -2 Query: 596 NVKTLAMILLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYI 417 ++K++ + +L+LGLV + Q + CC + Y CR S C + G Sbjct: 6 SIKSVVICVLILGLVLEQ--VQVEGKSCCKNTTGRNCYNACRFAGGSR--PVCATACG-C 60 Query: 416 SNDAGTECKSGY--IDIEKVSLQVN---YCKLGCTASLCNKV--TPSGNDA---MERCTS 267 +G C Y +++ S + N YC +GC S+C+ + G + M C++ Sbjct: 61 KIISGPTCPRDYPKLNLLPESGEPNVTEYCTIGCRTSVCDNMDNVSRGQEMKFDMGLCSN 120 Query: 266 ECHDLCTKNGVEIAQVVVA 210 C C N E+ Q V A Sbjct: 121 ACARFC--NDGEVIQSVEA 137
>THN6_HORVU (P09618) Leaf-specific thionin BTH6 precursor [Contains:| Leaf-specific thionin BTH6; Acidic protein] Length = 137 Score = 34.3 bits (77), Expect = 0.33 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 10/126 (7%) Frame = -2 Query: 581 AMILLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYISNDAG 402 ++++ VL LV + Q + CC + Y CR S C G I + G Sbjct: 9 SVVICVLILVLVLEQVQVEGKSCCKDTLARNCYNTCRFAGGSR-PVCAGACRCKIIS--G 65 Query: 401 TECKSGYIDIEKVSLQ-----VNYCKLGCTASLCNKVTP--SGNDA---MERCTSECHDL 252 +C S Y + + YC +GCT S+C+ + G + M C++ C Sbjct: 66 PKCPSDYPKLNLLPESGEPDVTQYCTIGCTNSVCDNMDNVFRGQEMKFDMGLCSNACARF 125 Query: 251 CTKNGV 234 C V Sbjct: 126 CNDGAV 131
>THNX_HORVU (Q8H0Q5) Probable leaf thionin precursor [Contains: Probable leaf| thionin; Acidic protein] Length = 137 Score = 33.5 bits (75), Expect = 0.56 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 10/131 (7%) Frame = -2 Query: 596 NVKTLAMILLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYI 417 ++K++ + +L+LGLV + Q + CC + Y C S C + G Sbjct: 6 SIKSVVICVLILGLVLEQ--VQVEGKSCCKNTTGRNCYNACHFAGGSR--PVCATACG-C 60 Query: 416 SNDAGTECKSGY--IDIEKVSLQVN---YCKLGCTASLCNKV--TPSGNDA---MERCTS 267 +G C Y +++ S + N YC +GC S+C+ + G + M C++ Sbjct: 61 KIISGPTCPRDYPKLNLLPESGEPNATEYCTIGCRTSVCDNMDNVSRGQEMKFDMGLCSN 120 Query: 266 ECHDLCTKNGV 234 C C V Sbjct: 121 ACARFCNDGDV 131
>THN3_HORVU (P08772) Leaf-specific thionin DB4 precursor [Contains:| Leaf-specific thionin DB4; Acidic protein] Length = 137 Score = 33.5 bits (75), Expect = 0.56 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 10/131 (7%) Frame = -2 Query: 596 NVKTLAMILLVLGLVAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYI 417 ++K++ + +L+LGLV + Q + CC + Y C S C G I Sbjct: 6 SIKSVVICVLILGLVLEQ--VQVEGKSCCKDTLARNCYNTCHFAGGSR-PVCAGACRCKI 62 Query: 416 SNDAGTECKSGYIDIEKVSLQ-----VNYCKLGCTASLCNKVTP--SGNDA---MERCTS 267 + G +C S Y + + YC +GC S+C+ + G + M C++ Sbjct: 63 IS--GPKCPSDYPKLNLLPESGEPDVTQYCTIGCRNSVCDNMDNVFRGQEMKFDMGLCSN 120 Query: 266 ECHDLCTKNGV 234 C C V Sbjct: 121 ACARFCNDGAV 131
>L_CDVO (P24658) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2184 Score = 30.4 bits (67), Expect = 4.8 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Frame = -2 Query: 554 VAMERTQQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYISNDA-----GTECK 390 V ER QA H C D DC T ++ C V +GY+ + A G Sbjct: 1599 VIPERFDNIQARHLCILSDLYCNPRDCPQIRGLTPTQKCAVLSGYLKSKALESHVGLTWN 1658 Query: 389 SGYIDIEKVSLQVNYCKLGCTASLCNKVTP 300 I I++ S + Y + G + +V P Sbjct: 1659 DKPILIDQYSCSLTYLRRGSIKQIRLRVDP 1688
>ANGT_MOUSE (P11859) Angiotensinogen precursor [Contains: Angiotensin-1| (Angiotensin I) (Ang I); Angiotensin-2 (Angiotensin II) (Ang II); Angiotensin-3 (Angiotensin III) (Ang III) (Des-Asp[1]-angiotensin II)] Length = 477 Score = 30.0 bits (66), Expect = 6.2 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = -3 Query: 448 QSAAVFPPAIYQTTLELNASPVILI*RKFHYKSTTASWGARLP 320 QS A+F PA++ +L+L+ PV+ + + W LP Sbjct: 215 QSLALFTPALFPRSLDLSTDPVLATEKINRFIKAVTGWKMNLP 257
>PE48_CHRBE (O17450) Peritrophin-48 precursor| Length = 379 Score = 30.0 bits (66), Expect = 6.2 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Frame = -2 Query: 587 TLAMILLVLGLVAMERT---QQAQASHCCCHLDSVPTYFDCRAKSDSTVSECCGVSAGYI 417 TLA+ILL + Q Q+ LDS Y+ C + T+S C S+GY+ Sbjct: 9 TLALILLAFAQADYDVASYCQLVQSGTKLPSLDSCQNYYTCVSNGLPTLSSC---SSGYV 65 Query: 416 SNDAGTEC 393 N +C Sbjct: 66 FNKDSQQC 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,096,819 Number of Sequences: 219361 Number of extensions: 2020030 Number of successful extensions: 5380 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5167 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5371 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)