ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TBL3_HUMAN (Q12788) WD-repeat protein SAZD (Transducin beta-like... 30 4.8
2SPEA_DEIRA (Q9RXR4) Biosynthetic arginine decarboxylase (EC 4.1.... 30 6.3
3END4_BIFLO (Q8G689) Probable endonuclease 4 (EC 3.1.21.2) (Endon... 29 8.2
4MRP11_ARATH (Q9SKX0) Multidrug resistance-associated protein 11 ... 29 8.2

>TBL3_HUMAN (Q12788) WD-repeat protein SAZD (Transducin beta-like 3 protein)|
          Length = 519

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +2

Query: 11  SPTNNSLPWMNCTGKLTELHAR*RCTACPARSHGRSTSSIMSHLKGTLLNC 163
           S  ++SLPW  C  +  +L A       P+ S    TS++  HL+GT+L C
Sbjct: 410 SGASSSLPWTRCWPR-PQLMA-------PSSSGHSRTSAVSRHLRGTMLLC 452



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>SPEA_DEIRA (Q9RXR4) Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ADC)|
          Length = 662

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 92  CPARSHGRSTSSIMSHLKGTLLNCNPVNNFYTN 190
           CPAR     T+S+ +H +  +   NP+N  +T+
Sbjct: 2   CPARLRTPRTASLPTHRRSAMTTANPLNTSFTS 34



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>END4_BIFLO (Q8G689) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)|
           (Endodeoxyribonuclease IV)
          Length = 283

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 453 HAGCGSHIAVQLTPSCNSHSWSRADGVQFRMLSHAVKGSNCKFNADRFLT 304
           H G G+    +L     +  + RADGV   + + A KG+ C  N D   T
Sbjct: 117 HVGQGAETGCRLISEGLNQVFERADGVMVLLETMAGKGTECGRNFDELAT 166



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>MRP11_ARATH (Q9SKX0) Multidrug resistance-associated protein 11 (EC 3.6.3.44)|
           (Glutathione S-conjugate transporting ATPase 11)
           (ATP-energized glutathione S-conjugate pump 11)
          Length = 1194

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 296 QTQVRNLSALNLQLLPFTACDNILNC 373
           Q ++ NL  L  ++ PFT C+N+L C
Sbjct: 8   QLELENLLTLPPEMDPFTCCENLLRC 33


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,618,712
Number of Sequences: 219361
Number of extensions: 1877049
Number of successful extensions: 4655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4655
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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