ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23a22 |
|---|---|
| Clone Library Name | barley_pub |
>YAJ6_SCHPO (Q09906) Hypothetical UPF0206 protein C30D11.06c in chromosome I| Length = 426 Score = 55.5 bits (132), Expect = 1e-07 Identities = 28/82 (34%), Positives = 45/82 (54%) Frame = -1 Query: 542 CFAKELAPHKPLAKFLCIKGIVFFSFWQGCALDVLAAVGVIQSHHFWLDVEHIQEAIQNV 363 C +ELAP +P KFL +K I+F S+WQ L + +G++ + + + QNV Sbjct: 193 CLHEELAPFRPFPKFLSVKAIIFASYWQQTVLSITNWLGLLNGTGWIYSLLN-----QNV 247 Query: 362 LIILEMVIFSVLQQYAYHVAPY 297 L+ LEM F++ YA+ + Y Sbjct: 248 LMCLEMPFFALSHWYAFRIEDY 269
>YK31_YEAST (P36142) Hypothetical UPF0206 protein YKR051w| Length = 418 Score = 49.7 bits (117), Expect = 6e-06 Identities = 26/77 (33%), Positives = 42/77 (54%) Frame = -1 Query: 542 CFAKELAPHKPLAKFLCIKGIVFFSFWQGCALDVLAAVGVIQSHHFWLDVEHIQEAIQNV 363 C EL P+KP KFLC+K I+F S+WQ + L G + + + ++ +N Sbjct: 192 CLYPELTPYKPWLKFLCVKLIIFASYWQSIIIQGLVVTGKLGTGNQDRTSGYV---YKNG 248 Query: 362 LIILEMVIFSVLQQYAY 312 L+ +EMV F++L A+ Sbjct: 249 LLCIEMVPFAILHAVAF 265
>CV005_HUMAN (Q9Y519) Putative MAP kinase-activating protein C22orf5 (Putative| MAPK-activating protein FM08) Length = 407 Score = 45.8 bits (107), Expect = 9e-05 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Frame = -1 Query: 527 LAPHKPLAKFLCIKGIVFFSFWQGCALDVLAAVGVIQSHH---FWLDVEHIQEAIQNVLI 357 L+P+ P+ KF +K ++F SFWQG L +L G I H + + Q+ +I Sbjct: 240 LSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIHSARVSVGEGTVAAGYQDFII 299 Query: 356 ILEMVIFSVLQQYAYHVAPYSGADK 282 +EM ++ ++A+ Y ADK Sbjct: 300 CVEMFFAALALRHAFTYKVY--ADK 322
>CV005_MOUSE (Q8BG09) Putative MAP kinase-activating protein C22orf5 homolog| Length = 407 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Frame = -1 Query: 527 LAPHKPLAKFLCIKGIVFFSFWQGCALDVL---AAVGVIQSHHFWLDVEHIQEAIQNVLI 357 L+P+ P+ KF +K ++F SFWQG L +L A+ I S + + Q+ +I Sbjct: 240 LSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKINSARVSVGEGTVAAGYQDFII 299 Query: 356 ILEMVIFSVLQQYAYHVAPYSGADK 282 +EM ++ ++A+ Y ADK Sbjct: 300 CVEMFFAALALRHAFTYKVY--ADK 322
>COX3_DROYA (P00418) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 262 Score = 35.4 bits (80), Expect = 0.12 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Frame = -1 Query: 557 SFSITCFAKELAPHKPLAKFLCIKGIVFFSFWQ----GCALDVLAAVGVIQSHHFWLDVE 390 SF F L+P L GI+ F+ +Q A+ + + V V +HH ++ Sbjct: 97 SFFWAFFHSSLSPAIELGASWPPMGIISFNPFQIPLLNTAILLASGVTVTWAHHSLMESN 156 Query: 389 HIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 285 H Q +L + F++LQ Y Y AP++ AD Sbjct: 157 HSQTTQGLFFTVLLGIYFTILQAYEYIEAPFTIAD 191
>COX3_ANOQU (P33508) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 262 Score = 35.4 bits (80), Expect = 0.12 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Frame = -1 Query: 557 SFSITCFAKELAPHKPLAKFLCIKGIVFFSFWQ----GCALDVLAAVGVIQSHHFWLDVE 390 SF F L+P L GI+ F+ +Q A+ + + V V +HH ++ Sbjct: 97 SFFWAFFHSSLSPTIELGMTWPPVGIIAFNPFQIPLLNTAILLASGVTVTWAHHALMESN 156 Query: 389 HIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 285 H Q I+ + FS+LQ Y Y AP++ AD Sbjct: 157 HSQATQGLFFTIVLGIYFSILQAYEYIEAPFTIAD 191
>COX3_DROME (P00417) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 262 Score = 35.0 bits (79), Expect = 0.15 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Frame = -1 Query: 557 SFSITCFAKELAPHKPLAKFLCIKGIVFFSFWQ----GCALDVLAAVGVIQSHHFWLDVE 390 SF F L+P L GI+ F+ +Q A+ + + V V +HH ++ Sbjct: 97 SFFWAFFHSSLSPAIELGASWPPMGIISFNPFQIPLLNTAILLASGVTVTWAHHSLMENN 156 Query: 389 HIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 285 H Q +L + F++LQ Y Y AP++ AD Sbjct: 157 HSQTTQGLFFTVLLGIYFTILQAYEYIEAPFTIAD 191
>COX3_ANOGA (P34842) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 262 Score = 33.1 bits (74), Expect = 0.58 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Frame = -1 Query: 557 SFSITCFAKELAPHKPLAKFLCIKGIVFFSFWQ----GCALDVLAAVGVIQSHHFWLDVE 390 SF F L+P L GI F+ +Q A+ + + V V +HH ++ Sbjct: 97 SFFWAFFHSSLSPTIELGMTWPPVGIAAFNPFQIPLLNTAILLASGVTVTWAHHALMEGN 156 Query: 389 HIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 285 H Q I+ V F++LQ Y Y AP++ AD Sbjct: 157 HSQATQGLFFTIVLGVYFTILQAYEYIEAPFTIAD 191
>UCHL1_HORSE (Q9GM50) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) (Neuron cytoplasmic protein 9.5) (PGP 9.5) (PGP9.5) Length = 223 Score = 32.0 bits (71), Expect = 1.3 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 9/98 (9%) Frame = -1 Query: 377 AIQNVLIILEMVIFSVLQQYAYHVAPYSGADKAKSVKKNE*SRASCQATSAAGSCMV--- 207 A+ N LE SVL+Q+ S D+AK +KNE +A+ A + G C V Sbjct: 98 AVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDK 157 Query: 206 ---LCVCAGSIDSRCYR---TCAFPCGHV*SESSLYLE 111 + ++D Y FP H S L L+ Sbjct: 158 VNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDLLLQ 195
>DNAE2_RALSO (Q8XRN1) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1075 Score = 32.0 bits (71), Expect = 1.3 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 429 RGDSVSPFLAGRGAHPGGNPECLDYPG 349 +G V P+L R A GNP+C+ YPG Sbjct: 645 QGGMVHPYLQRREAVRNGNPDCVTYPG 671
>TRIB2_HUMAN (Q92519) Tribbles homolog 2 (TRB-2)| Length = 343 Score = 32.0 bits (71), Expect = 1.3 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 214 QEPAADVAWHEALDHSFFFTDFALSAPLYGA 306 +EP+ + E LDH +F TDF++S YGA Sbjct: 291 REPSERLTSQEILDHPWFSTDFSVSNSAYGA 321
>UCHL1_PIG (Q6SEG5) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) Length = 223 Score = 30.8 bits (68), Expect = 2.9 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = -1 Query: 377 AIQNVLIILEMVIFSVLQQYAYHVAPYSGADKAKSVKKNE*SRASCQATSAAGSCMV 207 A+ N LE SVL+Q+ S D+AK +KNE +A+ A + G C V Sbjct: 98 AVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRV 154
>TRIB2_PONPY (Q5R669) Tribbles homolog 2 (TRB-2)| Length = 343 Score = 30.8 bits (68), Expect = 2.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 214 QEPAADVAWHEALDHSFFFTDFALSAPLYGA 306 +EP+ + E LDH +F TDF++S YGA Sbjct: 291 REPSERLTSQEILDHPWFSTDFSVSNSGYGA 321
>TRIB2_CANFA (Q28283) Tribbles homolog 2 (TRB-2)| Length = 343 Score = 30.8 bits (68), Expect = 2.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 214 QEPAADVAWHEALDHSFFFTDFALSAPLYGA 306 +EP+ + E LDH +F TDF++S YGA Sbjct: 291 REPSERLTSQEILDHPWFSTDFSVSNSGYGA 321
>TRIB2_BOVIN (Q5GLH2) Tribbles homolog 2 (TRB-2)| Length = 343 Score = 30.8 bits (68), Expect = 2.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 214 QEPAADVAWHEALDHSFFFTDFALSAPLYGA 306 +EP+ + E LDH +F TDF++S YGA Sbjct: 291 REPSERLTSQEILDHPWFSTDFSVSNSGYGA 321
>ZN546_HUMAN (Q86UE3) Zinc finger protein 546| Length = 836 Score = 30.4 bits (67), Expect = 3.8 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 2/83 (2%) Frame = +2 Query: 92 SCRFSSVQGITTTHSTRVHKEMHMSYNILNQYSQH--IHTKPYKNQLQMSLGTKPWIIRS 265 S +F S Q I T+ ST + KE ++ +QH IHT G KP+I Sbjct: 565 SNQFISHQRIHTSESTYICKECGKIFSRRYNLTQHFKIHT-----------GEKPYICNE 613 Query: 266 SSQISPCQRRCTERHGTHTAGVP 334 + Q T+ H HT P Sbjct: 614 CGKAFRFQTELTQHHRIHTGEKP 636
>COX3_CYACA (P48873) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 270 Score = 30.4 bits (67), Expect = 3.8 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = -1 Query: 488 KGIVFFSFWQGCALD----VLAAVGVIQSHHFWLDVEHIQEAIQNVLIILEMVIFSVLQQ 321 KGI FFS W L+ +L+ V SH+ + Q +L I +IF++ Q Sbjct: 127 KGIQFFSPWDIPFLNTIILLLSGCAVTWSHNCIISGFRRQAIFSLILTIGLALIFTIFQI 186 Query: 320 YAYHVAPYSGADKA 279 Y Y +A + +D A Sbjct: 187 YEYAIASFHLSDGA 200
>ISPE_XYLFT (Q87A21) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 298 Score = 30.4 bits (67), Expect = 3.8 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Frame = -3 Query: 426 GDSVSPFLAGRGAHPGGNPECLD---YPGNGHLLGTPAVCVPCRSV 298 G V F+ G A G ECL PG +LL P VCVP R + Sbjct: 149 GADVPVFVHGCNAWAEGVGECLTPMILPGAAYLLLDPGVCVPTREL 194
>ISPE_XYLFA (Q9PA75) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 298 Score = 30.4 bits (67), Expect = 3.8 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Frame = -3 Query: 426 GDSVSPFLAGRGAHPGGNPECLD---YPGNGHLLGTPAVCVPCRSV 298 G V F+ G A G ECL PG +LL P VCVP R + Sbjct: 149 GADVPVFVHGCNAWAEGVGECLTPMILPGAAYLLLDPGVCVPTREL 194
>RNBP6_HUMAN (O60518) Ran-binding protein 6 (RanBP6)| Length = 1105 Score = 30.0 bits (66), Expect = 4.9 Identities = 18/82 (21%), Positives = 39/82 (47%) Frame = +3 Query: 204 QNHTRTSCRCRLARSPGSFVLLHRFRLVSAAVRSDMVRILLEYREDDHFQDNQDILDCLL 383 Q+ + R AR+ +FVL + + +D++ +L+ D +QD+ +L+ L+ Sbjct: 190 QDQEHPAIRTLSARAAAAFVLANENNIALFKDFADLLPGILQAVNDSCYQDDDSVLESLV 249 Query: 384 DVLHVQPEMVRLNHPYSSQNIQ 449 ++ P+ + PY +Q Sbjct: 250 EIADTVPKYL---GPYLEDTLQ 268
>UCHL1_MACFA (Q60HC8) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) Length = 223 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -1 Query: 335 SVLQQYAYHVAPYSGADKAKSVKKNE*SRASCQATSAAGSCMV 207 SVL+Q+ S D+AK +KNE +A+ A + G C V Sbjct: 112 SVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRV 154
>UCHL1_HUMAN (P09936) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) (Neuron cytoplasmic protein 9.5) (PGP 9.5) (PGP9.5) Length = 223 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -1 Query: 335 SVLQQYAYHVAPYSGADKAKSVKKNE*SRASCQATSAAGSCMV 207 SVL+Q+ S D+AK +KNE +A+ A + G C V Sbjct: 112 SVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRV 154
>COX3_SPOFR (Q35826) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) (Fragment) Length = 147 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/53 (28%), Positives = 28/53 (52%) Frame = -1 Query: 443 VLAAVGVIQSHHFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 285 + + V V +HH ++ + Q + I+ + F++LQ Y Y AP++ AD Sbjct: 24 ISSGVSVTWAHHAIMENNNSQMTQGLFITIILGIYFTILQAYEYFEAPFTIAD 76
>UCHL1_RAT (Q00981) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) (Neuron cytoplasmic protein 9.5) (PGP 9.5) (PGP9.5) Length = 223 Score = 29.6 bits (65), Expect = 6.4 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = -1 Query: 377 AIQNVLIILEMVIFSVLQQYAYHVAPYSGADKAKSVKKNE*SRASCQATSAAGSCMV 207 A+ N LE SVL+Q+ S D+AK +KNE +A+ + + G C V Sbjct: 98 AVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRV 154
>UCHL1_MOUSE (Q9R0P9) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) (Neuron cytoplasmic protein 9.5) (PGP 9.5) (PGP9.5) Length = 223 Score = 29.6 bits (65), Expect = 6.4 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = -1 Query: 377 AIQNVLIILEMVIFSVLQQYAYHVAPYSGADKAKSVKKNE*SRASCQATSAAGSCMV 207 A+ N LE SVL+Q+ S D+AK +KNE +A+ + + G C V Sbjct: 98 AVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRV 154
>C71BG_ARATH (Q9LTM7) Cytochrome P450 71B16 (EC 1.14.-.-)| Length = 502 Score = 29.3 bits (64), Expect = 8.4 Identities = 10/29 (34%), Positives = 22/29 (75%) Frame = +3 Query: 315 RILLEYREDDHFQDNQDILDCLLDVLHVQ 401 R++ ++ + ++D++DI+D +LDV+H Q Sbjct: 253 RVIDDHSDPGRWKDHKDIVDVMLDVMHKQ 281
>VCOM_ADE02 (P03267) Minor core protein (Protein V) (pV)| Length = 369 Score = 29.3 bits (64), Expect = 8.4 Identities = 22/80 (27%), Positives = 34/80 (42%) Frame = +2 Query: 242 TKPWIIRSSSQISPCQRRCTERHGTHTAGVPRR*PFPG*SRHSGLPPGCAPRPARNGETE 421 T PW+ R S+ P + R + ++GT +A +P L P AP P G T Sbjct: 268 TDPWMFRVSA---PRRPRRSRKYGTASALLPEY----------ALHPSIAPTPGYRGYTY 314 Query: 422 SPLQQPKHPAHSPARKRRRQ 481 P ++ + RRR+ Sbjct: 315 RPRRRATTRRRTTTGTRRRR 334
>COX3_PROWI (Q37620) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 262 Score = 29.3 bits (64), Expect = 8.4 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 4/96 (4%) Frame = -1 Query: 560 WSFSITCFAKELAPHKPLAKFLCIKGIVFFSFWQGCALDVL----AAVGVIQSHHFWLDV 393 W+F F LAP + KGI + W+ L+ + + V +HH L Sbjct: 99 WAF----FHSSLAPTIEIGAVWPPKGIQVLNPWEIPFLNTIILLTSGASVTWAHHAILAG 154 Query: 392 EHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 285 Q I + +L VIF+ Q Y AP++ +D Sbjct: 155 NRKQGIISLAITVLLAVIFTGFQALEYLEAPFTISD 190
>COX3_LOCMI (P14574) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 263 Score = 29.3 bits (64), Expect = 8.4 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = -1 Query: 452 ALDVLAAVGVIQSHHFWLDVEHIQEAIQNVLIILEM-VIFSVLQQYAYHVAPYSGAD 285 A+ + + V + +HH ++ H Q A+Q + + + F++LQ Y Y AP++ AD Sbjct: 137 AILLASGVTITWAHHSIMECNHSQ-ALQGLFFTVMLGFYFTLLQMYEYWEAPFTIAD 192
>CR1_HORVU (P23251) Cold-regulated protein 1 (Fragment)| Length = 127 Score = 29.3 bits (64), Expect = 8.4 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 12/68 (17%) Frame = +2 Query: 371 GLPPGCAPRPAR--NGETESPLQQ-PKHPAHS---------PARKRRRQSL*CTRTSQEA 514 G PP AP PAR G SPL + P A S P RRR+ TR ++ Sbjct: 41 GPPPSPAPLPARLFPGRASSPLARTPSAGAASACKPLLERLPTPSRRRRRRRATRRARSR 100 Query: 515 CEVPTPWQ 538 TPW+ Sbjct: 101 MPRTTPWR 108
>TRIB2_MOUSE (Q8K4K3) Tribbles homolog 2 (TRB-2)| Length = 343 Score = 29.3 bits (64), Expect = 8.4 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +1 Query: 214 QEPAADVAWHEALDHSFFFTDFALSAPLYGA 306 +EP+ + E LDH +F TDF++S +GA Sbjct: 291 REPSERLTSQEILDHPWFSTDFSVSNSGFGA 321
>COX3_BRARE (Q9MIY4) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 261 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/56 (32%), Positives = 29/56 (51%) Frame = -1 Query: 452 ALDVLAAVGVIQSHHFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 285 A+ + + V V +HH ++ E Q L IL + F+ LQ Y+ AP++ AD Sbjct: 135 AVLLASGVTVTWAHHSLMEGERKQAIQSLALTILLGLYFTALQAMEYYEAPFTIAD 190
>ZIPA_SHIFL (Q83QN9) Cell division protein zipA homolog| Length = 327 Score = 29.3 bits (64), Expect = 8.4 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 7/37 (18%) Frame = +2 Query: 374 LPPGCAPRPAR-------NGETESPLQQPKHPAHSPA 463 +PP APRPA+ + E PLQQP P +PA Sbjct: 112 VPPQHAPRPAQPVQQPAYQPQPEQPLQQPVSPQVAPA 148
>COX3_CHOCR (P48872) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 272 Score = 29.3 bits (64), Expect = 8.4 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 4/96 (4%) Frame = -1 Query: 560 WSFSITCFAKELAPHKPLAKFLCIKGIVFFSFWQGCALD----VLAAVGVIQSHHFWLDV 393 W+F F LAP + KGI + W+ L+ +L+ V HH + Sbjct: 109 WAF----FHSSLAPTIEIGSIWPPKGINVLNPWEIPFLNTLILLLSGCTVTWCHHSLVSN 164 Query: 392 EHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 285 Q + L I+ ++F+ Q Y Y +A + +D Sbjct: 165 LRNQSVLSLFLTIVLAIVFTTFQAYEYSMADFRLSD 200 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,234,681 Number of Sequences: 219361 Number of extensions: 2027183 Number of successful extensions: 6465 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 6132 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6452 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
