ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22l19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473840.1| Oryza sativa (japonica cultivar-group), predic... 270 4e-69
2dbj|AK070129.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 3e-67
3emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 182 8e-43
4emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4,... 182 8e-43
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 182 8e-43
6emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 182 8e-43
7gb|AE004956.1| Pseudomonas aeruginosa PAO1, section 517 of 529 o... 46 0.12
8gb|AC116815.15| Mus musculus chromosome 5, clone RP24-357H22, co... 44 0.46
9ref|XM_368607.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 44 0.46
10gb|AC157929.6| Mus musculus chromosome 5, clone RP24-122G17, com... 44 0.46
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.46
12dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.46
13gb|DQ190053.1| Cystobacter fuscus MmxC (mmxC) and MmxB (mmxB) ge... 42 1.8
14gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 7.1
15ref|XM_478310.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.1
16gb|AC164177.6| Mus musculus 10 BAC RP23-102O12 (Roswell Park Can... 40 7.1
17gb|AC153969.12| Mus musculus 10 BAC RP24-86H7 (Roswell Park Canc... 40 7.1
18gb|AC135452.2| Homo sapiens 3 BAC RP11-507A10 (Roswell Park Canc... 40 7.1 
>ref|XM_473840.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 954

 Score =  270 bits (136), Expect = 4e-69
 Identities = 203/224 (90%), Gaps = 1/224 (0%)
 Strand = Plus / Minus

                                                                       
Query: 303 tcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcgc 362
           |||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct: 954 tcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcgc 895

                                                                       
Query: 363 ctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcacgaggtccac 422
            ||||||||||| ||||| ||||||||||||||||||||  |||||||||| || || ||
Sbjct: 894 ttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcacaagatcgac 835

                                                                       
Query: 423 ggcttcctggttcttcatcaccttccataatccatcgctggcaagtatgacgaactctat 482
           |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 834 ggcttcctggttcttcattaccttccatagtccatcgctggcaagtatgacgaactctat 775

                                                       
Query: 483 acttcgagtttataggtacatgcctaatgtcaggttccgaactc 526
            ||| || ||||| |||||||||||||  |||||||| ||||||
Sbjct: 774 gctt-gaatttattggtacatgcctaacatcaggttctgaactc 732
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>dbj|AK070129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047A13, full
            insert sequence
          Length = 1585

 Score =  264 bits (133), Expect = 3e-67
 Identities = 203/225 (90%), Gaps = 1/225 (0%)
 Strand = Plus / Minus

                                                                        
Query: 302  ttcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcg 361
            ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct: 1229 ttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcg 1170

                                                                        
Query: 362  cctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcacgaggtcca 421
            | ||||||||||| ||||| ||||||||||||||||||||  |||||||||| || || |
Sbjct: 1169 cttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcacaagatcga 1110

                                                                        
Query: 422  cggcttcctggttcttcatcaccttccataatccatcgctggcaagtatgacgaactcta 481
            ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 1109 cggcttcctggttcttcattaccttccatagtccatcgctggcaagtatgacgaactcta 1050

                                                         
Query: 482  tacttcgagtttataggtacatgcctaatgtcaggttccgaactc 526
            | ||| ||  |||| |||||||||||||  |||||||| ||||||
Sbjct: 1049 tgctt-gaacttattggtacatgcctaacatcaggttctgaactc 1006
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>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
              complete sequence
          Length = 179798

 Score =  182 bits (92), Expect = 8e-43
 Identities = 131/144 (90%)
 Strand = Plus / Plus

                                                                          
Query: 302    ttcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcg 361
              ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct: 177010 ttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcg 177069

                                                                          
Query: 362    cctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcacgaggtcca 421
              | ||||||||||| ||||| ||||||||||||||||||||  |||||||||| || || |
Sbjct: 177070 cttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcacaagatcga 177129

                                      
Query: 422    cggcttcctggttcttcatcacct 445
              ||||||||||||||||||| ||||
Sbjct: 177130 cggcttcctggttcttcattacct 177153



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 77/85 (90%), Gaps = 1/85 (1%)
 Strand = Plus / Plus

                                                                          
Query: 442    accttccataatccatcgctggcaagtatgacgaactctatacttcgagtttataggtac 501
              |||||||||| |||||||||||||||||||||||||||||| ||| || ||||| |||||
Sbjct: 177473 accttccatagtccatcgctggcaagtatgacgaactctatgctt-gaatttattggtac 177531

                                       
Query: 502    atgcctaatgtcaggttccgaactc 526
              ||||||||  |||||||| ||||||
Sbjct: 177532 atgcctaacatcaggttctgaactc 177556
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>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
            complete sequence
          Length = 150551

 Score =  182 bits (92), Expect = 8e-43
 Identities = 131/144 (90%)
 Strand = Plus / Plus

                                                                        
Query: 302  ttcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcg 361
            ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct: 6857 ttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcg 6916

                                                                        
Query: 362  cctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcacgaggtcca 421
            | ||||||||||| ||||| ||||||||||||||||||||  |||||||||| || || |
Sbjct: 6917 cttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcacaagatcga 6976

                                    
Query: 422  cggcttcctggttcttcatcacct 445
            ||||||||||||||||||| ||||
Sbjct: 6977 cggcttcctggttcttcattacct 7000



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 77/85 (90%), Gaps = 1/85 (1%)
 Strand = Plus / Plus

                                                                        
Query: 442  accttccataatccatcgctggcaagtatgacgaactctatacttcgagtttataggtac 501
            |||||||||| |||||||||||||||||||||||||||||| ||| || ||||| |||||
Sbjct: 7320 accttccatagtccatcgctggcaagtatgacgaactctatgctt-gaatttattggtac 7378

                                     
Query: 502  atgcctaatgtcaggttccgaactc 526
            ||||||||  |||||||| ||||||
Sbjct: 7379 atgcctaacatcaggttctgaactc 7403
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  182 bits (92), Expect = 8e-43
 Identities = 131/144 (90%)
 Strand = Plus / Plus

                                                                            
Query: 302      ttcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcg 361
                ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct: 30909489 ttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcg 30909548

                                                                            
Query: 362      cctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcacgaggtcca 421
                | ||||||||||| ||||| ||||||||||||||||||||  |||||||||| || || |
Sbjct: 30909549 cttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcacaagatcga 30909608

                                        
Query: 422      cggcttcctggttcttcatcacct 445
                ||||||||||||||||||| ||||
Sbjct: 30909609 cggcttcctggttcttcattacct 30909632



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 77/85 (90%), Gaps = 1/85 (1%)
 Strand = Plus / Plus

                                                                            
Query: 442      accttccataatccatcgctggcaagtatgacgaactctatacttcgagtttataggtac 501
                |||||||||| |||||||||||||||||||||||||||||| ||| || ||||| |||||
Sbjct: 30909952 accttccatagtccatcgctggcaagtatgacgaactctatgctt-gaatttattggtac 30910010

                                         
Query: 502      atgcctaatgtcaggttccgaactc 526
                ||||||||  |||||||| ||||||
Sbjct: 30910011 atgcctaacatcaggttctgaactc 30910035
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>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
             sequence
          Length = 134586

 Score =  182 bits (92), Expect = 8e-43
 Identities = 131/144 (90%)
 Strand = Plus / Plus

                                                                         
Query: 302   ttcagcagcggaagcggataacgatgcaggagatatcgtccttgctcttcctcgcgagcg 361
             ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct: 86483 ttcagcagcggaatcggatgacgatgcaggagatgtcgtccttgctcttcctcgcaagcg 86542

                                                                         
Query: 362   cctcggtcgtcagccgcttggctgctgcctgggggtcctttgtcgacttcacgaggtcca 421
             | ||||||||||| ||||| ||||||||||||||||||||  |||||||||| || || |
Sbjct: 86543 cttcggtcgtcagtcgcttcgctgctgcctgggggtccttgatcgacttcacaagatcga 86602

                                     
Query: 422   cggcttcctggttcttcatcacct 445
             ||||||||||||||||||| ||||
Sbjct: 86603 cggcttcctggttcttcattacct 86626



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 77/85 (90%), Gaps = 1/85 (1%)
 Strand = Plus / Plus

                                                                         
Query: 442   accttccataatccatcgctggcaagtatgacgaactctatacttcgagtttataggtac 501
             |||||||||| |||||||||||||||||||||||||||||| ||| || ||||| |||||
Sbjct: 86946 accttccatagtccatcgctggcaagtatgacgaactctatgctt-gaatttattggtac 87004

                                      
Query: 502   atgcctaatgtcaggttccgaactc 526
             ||||||||  |||||||| ||||||
Sbjct: 87005 atgcctaacatcaggttctgaactc 87029
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>gb|AE004956.1| Pseudomonas aeruginosa PAO1, section 517 of 529 of the complete
            genome
          Length = 11660

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 425  cttcctggttcttcatcaccttc 447
            |||||||||||||||||||||||
Sbjct: 7385 cttcctggttcttcatcaccttc 7407
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>gb|AC116815.15| Mus musculus chromosome 5, clone RP24-357H22, complete sequence
          Length = 179737

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 47    gtgtgatatatgcacagatgaatgatagac 76
             |||||||||||||||| |||||||| ||||
Sbjct: 93461 gtgtgatatatgcacacatgaatgagagac 93432
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>ref|XM_368607.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
            (MG00637.4) partial mRNA
          Length = 1875

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 373  agccgcttggctgctgcctggg 394
            ||||||||||||||||||||||
Sbjct: 1068 agccgcttggctgctgcctggg 1047
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>gb|AC157929.6| Mus musculus chromosome 5, clone RP24-122G17, complete sequence
          Length = 193178

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 47     gtgtgatatatgcacagatgaatgatagac 76
              |||||||||||||||| |||||||| ||||
Sbjct: 184498 gtgtgatatatgcacacatgaatgagagac 184469
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 438      catcaccttccataatccatcgctggcaag 467
                ||||||||||||||||||||| || |||||
Sbjct: 19191052 catcaccttccataatccatcacttgcaag 19191081



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 321      aacgatgcaggagatatcgtccttgctcttcc 352
                ||||||||||||||| ||||| ||||| ||||
Sbjct: 19190004 aacgatgcaggagatgtcgtctttgcttttcc 19190035
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>dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0062D12
          Length = 155408

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 438    catcaccttccataatccatcgctggcaag 467
              ||||||||||||||||||||| || |||||
Sbjct: 114447 catcaccttccataatccatcacttgcaag 114476



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 321    aacgatgcaggagatatcgtccttgctcttcc 352
              ||||||||||||||| ||||| ||||| ||||
Sbjct: 113399 aacgatgcaggagatgtcgtctttgcttttcc 113430
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>gb|DQ190053.1| Cystobacter fuscus MmxC (mmxC) and MmxB (mmxB) genes, partial cds
          Length = 12757

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 352  ctcgcgagcgcctcggtcgtc 372
            |||||||||||||||||||||
Sbjct: 9636 ctcgcgagcgcctcggtcgtc 9616
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 358    agcgcctcggtcgtcagccgcttg 381
              |||||||||||||||||| |||||
Sbjct: 235302 agcgcctcggtcgtcagcggcttg 235325
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>ref|XM_478310.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 888

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 321 aacgatgcaggagatatcgtccttgctcttcc 352
           ||||||||||||||| ||||| ||||| ||||
Sbjct: 870 aacgatgcaggagatgtcgtctttgcttttcc 839
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>gb|AC164177.6| Mus musculus 10 BAC RP23-102O12 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 196230

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   tctactaatctcaagcctgt 170
             ||||||||||||||||||||
Sbjct: 53571 tctactaatctcaagcctgt 53552
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>gb|AC153969.12| Mus musculus 10 BAC RP24-86H7 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 209599

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    tctactaatctcaagcctgt 170
              ||||||||||||||||||||
Sbjct: 201096 tctactaatctcaagcctgt 201077
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>gb|AC135452.2| Homo sapiens 3 BAC RP11-507A10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 137095

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 497   ggtacatgcctaatgtcaggttcc 520
             |||||||| |||||||||||||||
Sbjct: 29710 ggtacatgtctaatgtcaggttcc 29687


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,424,917
Number of Sequences: 3902068
Number of extensions: 3424917
Number of successful extensions: 59318
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59216
Number of HSP's gapped (non-prelim): 96
length of query: 527
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 504
effective length of database: 17,143,297,704
effective search space: 8640222042816
effective search space used: 8640222042816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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