ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23a17 |
|---|---|
| Clone Library Name | barley_pub |
>MAP4_MOUSE (P27546) Microtubule-associated protein 4 (MAP 4)| Length = 1125 Score = 33.5 bits (75), Expect = 0.59 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Frame = -2 Query: 625 ARGISGNQTALPPPRAPMASPTRASPPM*AQEGGATATTNGRQGGARHALTTIPSFP-PL 449 A G++GN PP + P SP + + P+ + T+T+ A+ T++P P P Sbjct: 648 AVGVTGNDITTPPNKEPPPSPEKKAKPLATTQPAKTSTSK-----AKTQPTSLPKQPAPT 702 Query: 448 AARGAEKVRVSGADLSV 398 + G K +S A SV Sbjct: 703 TSGGLNKKPMSLASGSV 719
>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 33.1 bits (74), Expect = 0.77 Identities = 23/53 (43%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = -2 Query: 640 ASTATARGISGNQ-TALPPPRAPMASPTRASPPM*AQEGGATATTNGRQGGAR 485 A+T TA IS T P RAP A P RA P A A A NG G R Sbjct: 549 AATGTAAAISTRAPTPSPAGRAPAADPRRAGAPALAGAARAEAGRNGNPGRER 601
>GBRA4_RAT (P28471) Gamma-aminobutyric-acid receptor alpha-4 subunit precursor| (GABA(A) receptor) Length = 552 Score = 32.0 bits (71), Expect = 1.7 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -2 Query: 664 FGTRRFAMASTATARGISGNQTALPPPRAPMASPTRAS 551 FG R + +T G+ GN +A PPP AP S + S Sbjct: 477 FGARLGRIKTTVNTTGVPGNVSATPPPSAPPPSGSGTS 514
>DOS_MOUSE (Q66L44) Protein Dos (Downstream of Stk11 protein) (Fragment)| Length = 552 Score = 32.0 bits (71), Expect = 1.7 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 8/101 (7%) Frame = -2 Query: 613 SGNQTALPPPRAPMASPTRASPPM*AQE-----GGATATTNGRQG---GARHALTTIPSF 458 +G+ A PPPR +ASPT P + E GGA+ T G G HA Sbjct: 207 AGDSVAFPPPRPFLASPTSPPPTLGRLEAAEAAGGASPETPPEHGISLGPEHA----QQQ 262 Query: 457 PPLAARGAEKVRVSGADLSVYTSRRRTCMAGGAGVSHGSTG 335 P + AE + S DL ++ R + H S+G Sbjct: 263 DPQQEQDAEHAQCSYRDL--WSLRASLELHAATASDHSSSG 301
>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 32.0 bits (71), Expect = 1.7 Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = -2 Query: 640 ASTATARGISGNQ-TALPPPRAPMASPTRASPPM*AQEGGATATTNGRQGGAR 485 A+T+TA IS T P RAP A P RA P A A NG G R Sbjct: 549 AATSTAAAISTRAPTPSPAGRAPAADPRRAGAPALAGAARAEVGRNGNPGRER 601
>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) (GTP-binding and GTPase activating protein 2) (GGAP2) Length = 1192 Score = 32.0 bits (71), Expect = 1.7 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 1/104 (0%) Frame = -2 Query: 628 TARGISGNQTALPPPRAPMASPTRASPPM*AQEGGATATTNGRQGGARHALTTIPSFPPL 449 T G+ G+ + P + + +PP A + T TT+G + G + S+P Sbjct: 159 TGGGVPGSSSPHP---GTGSRRLKVAPPPPAPKPCKTVTTSGAKAGGGKGAGSRLSWPES 215 Query: 448 AARGAEKVRVSGADLSVYTSRRRTCMAGGAGVSHGST-GILGAG 320 + K S A S T A G G S ST G +GAG Sbjct: 216 EGKPRVKGSKSSAGTGASVSAAATAAAAGGGGSTASTSGGVGAG 259
>TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic| serine protease) (Membrane-type mosaic serine protease) Length = 543 Score = 31.2 bits (69), Expect = 2.9 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 12/69 (17%) Frame = -2 Query: 640 ASTATARGISGNQTALPPPRA------PMASPTRASPPM*AQEGGATA------TTNGRQ 497 A T+ AR A PP+A P ASP RA PP + + A +++GR Sbjct: 21 ARTSPARAPPQASPARTPPQASPARTPPQASPARAPPPQASPARASPARAPPSRSSSGRS 80 Query: 496 GGARHALTT 470 AR A TT Sbjct: 81 SSARSASTT 89
>GBRA4_MOUSE (Q9D6F4) Gamma-aminobutyric-acid receptor alpha-4 subunit precursor| (GABA(A) receptor) Length = 552 Score = 31.2 bits (69), Expect = 2.9 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -2 Query: 664 FGTRRFAMASTATARGISGNQTALPPPRAPMASPTRAS 551 FG+R + +T G +GN +A PPP AP S + S Sbjct: 477 FGSRLGRIKTTVNTTGAAGNVSATPPPPAPPPSGSGTS 514
>WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1)| (Protein kinase with no lysine 1) (Protein kinase, lysine-deficient 1) (Kinase deficient protein) Length = 2382 Score = 30.8 bits (68), Expect = 3.8 Identities = 28/92 (30%), Positives = 39/92 (42%) Frame = -2 Query: 664 FGTRRFAMASTATARGISGNQTALPPPRAPMASPTRASPPM*AQEGGATATTNGRQGGAR 485 F R S ATA + G +LP P P A P +++PP +E TAT Sbjct: 79 FFRRSVICDSNATALELPGLPLSLPQPSIPAAVP-QSAPPEPHREETVTAT--------- 128 Query: 484 HALTTIPSFPPLAARGAEKVRVSGADLSVYTS 389 A + + PP AA E+ A +V +S Sbjct: 129 -ATSQVAQQPPAAAAPGEQAVAGPAPSTVPSS 159
>CCMB_PARDE (P52219) Heme exporter protein B (Cytochrome c-type biogenesis| protein ccmB) Length = 215 Score = 30.8 bits (68), Expect = 3.8 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Frame = -2 Query: 595 LPPPRAP--MASPTRASPPM*AQEG-GATATTNGRQGGARHALTTIPSFPPLAARGAEKV 425 LP PR P +AS +P + GA T R+GG +L +P + P GAE V Sbjct: 118 LPGPRYPWLVASLLLGTPALSVLGSFGAAVTVGLRRGGLLVSLLVLPLYVPTLIFGAEAV 177 Query: 424 R--VSGAD 407 R +GAD Sbjct: 178 RRGAAGAD 185
>PAN1_YEAST (P32521) Protein PAN1| Length = 1480 Score = 30.8 bits (68), Expect = 3.8 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = +3 Query: 234 EDSQRSSVRTTNYTLGKQHCKI-HQEHTERPAPRMPVDPCETPAPPAIHVRRRDVYTDKS 410 ED + V N + KI H +H P P TP PPA+ V + + +KS Sbjct: 1283 EDESNNRVAVDNKV---EEAKIGHPDHARAPPVTAAPLPSVTPVPPAVPVPQANTSNEKS 1339 Query: 411 AP 416 +P Sbjct: 1340 SP 1341
>LAMC3_HUMAN (Q9Y6N6) Laminin gamma-3 chain precursor (Laminin 12 gamma 3| subunit) Length = 1587 Score = 30.4 bits (67), Expect = 5.0 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +3 Query: 288 HCKIHQEHTERPAPRMPVDPCETPAPPAIHVRRRDVYTDKSAP 416 HC+ QE+ PRMP PC+ + ++H++ D T P Sbjct: 363 HCERCQENFYHWDPRMPCQPCDCQSAGSLHLQCDDTGTCACKP 405
>ICP34_HHV1N (P37319) Infected cell protein ICP34.5 (Neurovirulence factor| ICP34.5) Length = 245 Score = 30.4 bits (67), Expect = 5.0 Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Frame = -2 Query: 592 PPPRAPMASPTRASPPM*AQEGGATATTNGRQGGARHALTTIPSFPP-----LAARGAEK 428 PP AP A PT A+P + GA G GGA PS PP L R A + Sbjct: 81 PPEPAPEARPTAAAPRPRSPPPGA-----GPGGGAN------PSHPPSRPFRLPPRLALR 129 Query: 427 VRVSGADLSVYTSRRRTCMAGGAG 356 +RV+ L +R R AGG G Sbjct: 130 LRVTAEHL----ARLRLRRAGGEG 149
>SGG_DROME (P18431) Protein kinase shaggy (EC 2.7.11.1) (Protein zeste-white 3)| Length = 1067 Score = 30.4 bits (67), Expect = 5.0 Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 9/115 (7%) Frame = -2 Query: 640 ASTATARGISGNQTALPPPRAPMASPTRASPPM*AQEGGATATTNGRQGGARHALTTIPS 461 AS +T+ +G+ ++ P + T A+ + GGATA T G G Sbjct: 955 ASGSTSVSSTGSGASVEGSAQPQSQGTAAAAG--SGSGGATAGTGGASAGG--------- 1003 Query: 460 FPPLAARGAEKVRVSGADLSVYTSRRRTCMAGGAGVSHG---------STGILGA 323 P + + SGA +V +AGGAG G +TG +GA Sbjct: 1004 --PGSGNNSSSGGASGAPSAVAAGGANAAVAGGAGGGGGAGAATAAATATGAIGA 1056
>ICP34_HHV1F (P08353) Infected cell protein ICP34.5 (Neurovirulence factor| ICP34.5) Length = 263 Score = 30.4 bits (67), Expect = 5.0 Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Frame = -2 Query: 592 PPPRAPMASPTRASPPM*AQEGGATATTNGRQGGARHALTTIPSFPP-----LAARGAEK 428 PP AP A PT A+P + GA G GGA PS PP L R A + Sbjct: 87 PPEPAPEARPTAAAPRPRSPPPGA-----GPGGGAN------PSHPPSRPFRLPPRLALR 135 Query: 427 VRVSGADLSVYTSRRRTCMAGGAG 356 +RV+ L +R R AGG G Sbjct: 136 LRVTAEHL----ARLRLRRAGGEG 155
>PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) (Proline-rich inositol polyphosphate 5-phosphatase) Length = 1001 Score = 30.4 bits (67), Expect = 5.0 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = -2 Query: 661 GTRRFAMASTATARGISGNQTALP----PPRAPMASPTRA 554 GTR + S GI NQT P PPR+P SP+R+ Sbjct: 317 GTRSPGLLSPTFRPGIPSNQTVPPPLPKPPRSPSRSPSRS 356
>AOX1_SAUGU (P22185) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)| Length = 349 Score = 30.0 bits (66), Expect = 6.5 Identities = 25/74 (33%), Positives = 33/74 (44%) Frame = -2 Query: 640 ASTATARGISGNQTALPPPRAPMASPTRASPPM*AQEGGATATTNGRQGGARHALTTIPS 461 A TA++ + G A P RA + P+ SPP A +T + + GG A T Sbjct: 31 ADTASSL-LHGCSAAAPAQRAGLWPPSWFSPPRHA----STLSAPAQDGGKEKAAGTAGK 85 Query: 460 FPPLAARGAEKVRV 419 PP GAEK V Sbjct: 86 VPPGEDGGAEKEAV 99
>ZIC5_HUMAN (Q96T25) Zinc finger protein ZIC 5 (Zinc finger protein of the| cerebellum 5) Length = 639 Score = 30.0 bits (66), Expect = 6.5 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = -2 Query: 619 GISGNQTALPPPRAPMASPTRASPP 545 G SG Q + PPP AP PT + PP Sbjct: 117 GSSGAQPSAPPPPAPPLPPTPSPPP 141
>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1185 Score = 30.0 bits (66), Expect = 6.5 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 9/51 (17%) Frame = -2 Query: 589 PPRAPMASP---------TRASPPM*AQEGGATATTNGRQGGARHALTTIP 464 PP AP P + PPM + GGA ++ G GG +H T P Sbjct: 209 PPGAPPPHPQLYPGGTGGVLSGPPMGPKGGGAASSVGGPNGGKQHPPPTTP 259
>UB2Q2_BOVIN (Q32L27) Ubiquitin-conjugating enzyme E2 Q2 (EC 6.3.2.19)| (Ubiquitin-protein ligase Q2) (Ubiquitin carrier protein Q2) Length = 342 Score = 30.0 bits (66), Expect = 6.5 Identities = 18/72 (25%), Positives = 28/72 (38%) Frame = +3 Query: 195 TGEKKEVKRFQTLEDSQRSSVRTTNYTLGKQHCKIHQEHTERPAPRMPVDPCETPAPPAI 374 +G K E+K ++ D R ++ L + HC+ P P P P P P + Sbjct: 4 SGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLV-----PPPAPPGSPHSPPPPLTL 58 Query: 375 HVRRRDVYTDKS 410 H + Y S Sbjct: 59 HCNITESYPSSS 70
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 30.0 bits (66), Expect = 6.5 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 9/51 (17%) Frame = -2 Query: 589 PPRAPMASP---------TRASPPM*AQEGGATATTNGRQGGARHALTTIP 464 PP AP P + PPM + GGA ++ G GG +H T P Sbjct: 208 PPGAPPPHPQLYPGGTGGVLSGPPMGPKGGGAASSVGGPNGGKQHPPPTTP 258
>GCVK_HCMVT (Q68101) Phosphotransferase UL97 (EC 2.7.1.-) (Ganciclovir kinase)| Length = 707 Score = 29.6 bits (65), Expect = 8.5 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Frame = -1 Query: 665 IRHEALRNGEHGDGA---RHLRQPNCPSSPSRSHGVSYEG 555 +R++ +R+GE D A +LR+P PS+ SR S +G Sbjct: 106 VRNDVMRDGEKEDAASDKENLRRPVVPSTSSRGSAASGDG 145
>ICP34_HHV1D (P37318) Infected cell protein ICP34.5 (Neurovirulence factor| ICP34.5) Length = 252 Score = 29.6 bits (65), Expect = 8.5 Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Frame = -2 Query: 592 PPPRAPMASPTRASPPM*AQEGGATATTNGRQGGARHALTTIPSFPP-----LAARGAEK 428 PP AP A PT A+P + GA G GGA PS PP L R A + Sbjct: 88 PPEPAPEARPTAAAPRPRSPPPGA-----GPGGGAD------PSHPPSRPFRLPPRLALR 136 Query: 427 VRVSGADLSVYTSRRRTCMAGGAG 356 +RV+ L +R R AGG G Sbjct: 137 LRVTAEHL----ARLRLRRAGGEG 156
>Y2082_MYCTU (Q10690) Hypothetical protein Rv2082| Length = 721 Score = 29.6 bits (65), Expect = 8.5 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = -2 Query: 661 GTRRFAMASTATARGISGNQTALPPPRAPMASPTRASPPM*AQEGGATATTNG 503 GT A A +A + LPPP P +PT +P + ATATT G Sbjct: 325 GTPAAAGAQALSAGALHAATEPLPPPAPPPTTPTVTTPTV------ATATTAG 371
>SOX11_XENLA (Q91731) Transcription factor SOX-11 (xSOX-11)| Length = 382 Score = 29.6 bits (65), Expect = 8.5 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +3 Query: 204 KKEVKRFQTLEDSQRSSVRTTNYTLGKQHCKIHQEHTERPAPRMPVDPCETPAPPAI 374 K+ KR++ L DS++ L +H + ++ RP + VDP + PPA+ Sbjct: 79 KRLGKRWKMLNDSEKIPFIEEAERLRLKHMADYPDYKYRPRKKPKVDPSASSKPPAL 135
>FUR1C_DROME (P30430) Furin-like protease 1, isoform 1-CRR precursor (EC| 3.4.21.75) (Furin-1) (Kex2-like endoprotease 1) (dKLIP-1) Length = 1101 Score = 29.6 bits (65), Expect = 8.5 Identities = 16/50 (32%), Positives = 20/50 (40%) Frame = -2 Query: 649 FAMASTATARGISGNQTALPPPRAPMASPTRASPPM*AQEGGATATTNGR 500 F S ATA +G + P AP + PT A PP NG+ Sbjct: 139 FVAGSVATAASSAGGSSPAAPSSAPSSPPTVAVPPPPPPSSALKVDPNGQ 188
>FUR11_DROME (P26016) Furin-like protease 1, isoforms 1/1-X/2 precursor (EC| 3.4.21.75) (Furin-1) (Kex2-like endoprotease 1) (dKLIP-1) Length = 1269 Score = 29.6 bits (65), Expect = 8.5 Identities = 16/50 (32%), Positives = 20/50 (40%) Frame = -2 Query: 649 FAMASTATARGISGNQTALPPPRAPMASPTRASPPM*AQEGGATATTNGR 500 F S ATA +G + P AP + PT A PP NG+ Sbjct: 139 FVAGSVATAASSAGGSSPAAPSSAPSSPPTVAVPPPPPPSSALKVDPNGQ 188
>ACHA2_PANTR (Q5IS52) Neuronal acetylcholine receptor protein, alpha-2 subunit| precursor Length = 529 Score = 29.6 bits (65), Expect = 8.5 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 306 EHTERPAPRMPVDPCETPAPPAI 374 E +RP PR P DP +P+P A+ Sbjct: 27 EEAKRPPPRAPGDPLSSPSPTAL 49
>ACHA2_HUMAN (Q15822) Neuronal acetylcholine receptor protein, alpha-2 subunit| precursor Length = 529 Score = 29.6 bits (65), Expect = 8.5 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 306 EHTERPAPRMPVDPCETPAPPAI 374 E +RP PR P DP +P+P A+ Sbjct: 27 EEAKRPPPRAPGDPLSSPSPTAL 49
>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 29.6 bits (65), Expect = 8.5 Identities = 25/103 (24%), Positives = 42/103 (40%) Frame = -2 Query: 628 TARGISGNQTALPPPRAPMASPTRASPPM*AQEGGATATTNGRQGGARHALTTIPSFPPL 449 T G+ G+ + P + + +PP A + T TT+G + G + S+P Sbjct: 159 TGGGVPGSSSPHP---GTGSRRLKVAPPPPAPKPFKTVTTSGAKAGGGKGAGSRLSWP-- 213 Query: 448 AARGAEKVRVSGADLSVYTSRRRTCMAGGAGVSHGSTGILGAG 320 K RV G+ + T GG + ++G +GAG Sbjct: 214 --ESEGKPRVKGSKSTAGTGASAVAAGGGGSAAVTTSGGVGAG 254
>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 29.6 bits (65), Expect = 8.5 Identities = 25/103 (24%), Positives = 42/103 (40%) Frame = -2 Query: 628 TARGISGNQTALPPPRAPMASPTRASPPM*AQEGGATATTNGRQGGARHALTTIPSFPPL 449 T G+ G+ + P + + +PP A + T TT+G + G + S+P Sbjct: 159 TGGGVPGSSSPHP---GTGSRRLKVAPPPPAPKPFKTVTTSGAKAGGGKGAGSRLSWP-- 213 Query: 448 AARGAEKVRVSGADLSVYTSRRRTCMAGGAGVSHGSTGILGAG 320 K RV G+ + T GG + ++G +GAG Sbjct: 214 --ESEGKPRVKGSKSTAGTGASAAAAGGGGSAAVTTSGGVGAG 254 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,739,434 Number of Sequences: 219361 Number of extensions: 1841140 Number of successful extensions: 7408 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 6422 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7375 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
