ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23a17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 484 gcctggctccaccctgtctgccgttggtggtggcggtggcg 524 ||||||||||| |||||||||| ||||||| ||||| |||| Sbjct: 6850003 gcctggctccatcctgtctgcctttggtggcggcggcggcg 6849963
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 484 gcctggctccaccctgtctgccgttggtggtggcggtggcg 524 ||||||||||| |||||||||| ||||||| ||||| |||| Sbjct: 6847900 gcctggctccatcctgtctgcctttggtggcggcggcggcg 6847860
>gb|AC105927.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1781E12, complete sequence Length = 120392 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 484 gcctggctccaccctgtctgccgttggtggtggcggtggcg 524 ||||||||||| |||||||||| ||||||| ||||| |||| Sbjct: 45938 gcctggctccatcctgtctgcctttggtggcggcggcggcg 45898
>gb|AC135157.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1017C11, complete sequence Length = 166072 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 484 gcctggctccaccctgtctgccgttggtggtggcggtggcg 524 ||||||||||| |||||||||| ||||||| ||||| |||| Sbjct: 16602 gcctggctccatcctgtctgcctttggtggcggcggcggcg 16562
>dbj|AK105124.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-D08, full insert sequence Length = 688 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 484 gcctggctccaccctgtctgccgttggtggtggcggtggcg 524 ||||||||||| |||||||||| ||||||| ||||| |||| Sbjct: 191 gcctggctccatcctgtctgcctttggtggcggcggcggcg 151
>gb|AC133934.3| Mus musculus BAC clone RP24-361B1 from chromosome 13, complete sequence Length = 135967 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 accgttctctagtctagtctct 181 |||||||||||||||||||||| Sbjct: 89176 accgttctctagtctagtctct 89155
>gb|AC153144.4| Mus musculus BAC clone RP23-220J15 from chromosome 13, complete sequence Length = 178032 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 160 accgttctctagtctagtctct 181 |||||||||||||||||||||| Sbjct: 39535 accgttctctagtctagtctct 39514
>ref|NM_195907.1| Oryza sativa (japonica cultivar-group) putative vacuolar sorting receptor protein (OSJNBb0078C13.14), mRNA Length = 1932 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 501 ctgccgttggtggtggcggtggcgc 525 |||||| |||||||||||||||||| Sbjct: 25 ctgccgctggtggtggcggtggcgc 49
>ref|XM_477219.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1864 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 tggtggtggcggtggcgccgc 528 ||||||||||||||||||||| Sbjct: 276 tggtggtggcggtggcgccgc 296
>ref|XM_506238.1| PREDICTED Oryza sativa (japonica cultivar-group), P0523A04.107 mRNA Length = 1880 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 tggtggtggcggtggcgccgc 528 ||||||||||||||||||||| Sbjct: 291 tggtggtggcggtggcgccgc 311
>gb|AF047007.1|SSADCYAP3 Sus scrofa domestica PACAP (ADCYAP1) gene, partial cds Length = 1025 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 tttgtaaaaagaaaaacaata 30 ||||||||||||||||||||| Sbjct: 697 tttgtaaaaagaaaaacaata 677
>gb|AC111135.10| Mus musculus chromosome 9, clone RP23-349N4, complete sequence Length = 215213 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 479 tgcatgcctggctccaccctg 499 ||||||||||||||||||||| Sbjct: 93110 tgcatgcctggctccaccctg 93130
>emb|CR361548.8| Zebrafish DNA sequence from clone CH211-140M22 in linkage group 1, complete sequence Length = 146409 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 agacttcagcatcaaccacac 84 ||||||||||||||||||||| Sbjct: 19778 agacttcagcatcaaccacac 19798
>emb|AL159972.8| Human DNA sequence from clone RP11-157H4 on chromosome 13 Contains part of the KLF12 gene for Kruppel-like factor 12, complete sequence Length = 149512 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 aaaaactggagagaaaaaaga 211 ||||||||||||||||||||| Sbjct: 64178 aaaaactggagagaaaaaaga 64198
>emb|AL049629.28|HSJ541C22 Human DNA sequence from clone RP4-541C22 on chromosome 11p13, complete sequence Length = 129298 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 468 atagtggttaatgcatgcctg 488 ||||||||||||||||||||| Sbjct: 56179 atagtggttaatgcatgcctg 56199
>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces hansenii Length = 1349926 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 463 taggaatagtggttaatgcat 483 ||||||||||||||||||||| Sbjct: 1283335 taggaatagtggttaatgcat 1283315
>gb|AC091666.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0078C13, complete sequence Length = 140553 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 501 ctgccgttggtggtggcggtggcgc 525 |||||| |||||||||||||||||| Sbjct: 130837 ctgccgctggtggtggcggtggcgc 130861
>gb|AC114781.2| Homo sapiens BAC clone RP11-576N17 from 4, complete sequence Length = 149188 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 205 aaaaagaagttaaaaggttccaaac 229 |||||||||||||||||| |||||| Sbjct: 113791 aaaaagaagttaaaaggtgccaaac 113767
>gb|AC021915.11| Homo sapiens chromosome 8, clone RP11-26M5, complete sequence Length = 183101 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 aaaatcaccaaaaactggaga 202 ||||||||||||||||||||| Sbjct: 65134 aaaatcaccaaaaactggaga 65114
>emb|BX324146.10| Zebrafish DNA sequence from clone CH211-207C15 in linkage group 19, complete sequence Length = 230267 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 ttctctagtctagtctctaaa 184 ||||||||||||||||||||| Sbjct: 180224 ttctctagtctagtctctaaa 180244
>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045C13, from Chromosome 10, complete sequence Length = 161250 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 501 ctgccgttggtggtggcggtggcgc 525 |||||| |||||||||||||||||| Sbjct: 135597 ctgccgctggtggtggcggtggcgc 135573
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 507 ttggtggtggcggtggcgccg 527 ||||||||||||||||||||| Sbjct: 1834512 ttggtggtggcggtggcgccg 1834532
>gb|AC010085.3|AC010085 Homo sapiens BAC clone RP11-168P10 from 7, complete sequence Length = 121912 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 aaaactggagagaaaaaagaa 212 ||||||||||||||||||||| Sbjct: 97928 aaaactggagagaaaaaagaa 97908
>emb|BX000463.19| Zebrafish DNA sequence from clone CH211-266I2, complete sequence Length = 164682 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 565 gagacgccatgggagcgcgag 585 ||||||||||||||||||||| Sbjct: 3377 gagacgccatgggagcgcgag 3357
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 501 ctgccgttggtggtggcggtggcgc 525 |||||| |||||||||||||||||| Sbjct: 9903118 ctgccgctggtggtggcggtggcgc 9903094
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 tggtggtggcggtggcgccgc 528 ||||||||||||||||||||| Sbjct: 7822740 tggtggtggcggtggcgccgc 7822760 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aaaaagaaaaacaatagcga 34 |||||||||||||||||||| Sbjct: 4996027 aaaaagaaaaacaatagcga 4996008
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 tggtggtggcggtggcgccgc 528 ||||||||||||||||||||| Sbjct: 10409010 tggtggtggcggtggcgccgc 10408990
>gb|AY028701.1| Mus musculus AMP-binding enzyme (Ampbp2) mRNA, partial cds Length = 542 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 616 tgccgcgcgccgtcgccgtgc 636 ||||||||||||||||||||| Sbjct: 183 tgccgcgcgccgtcgccgtgc 203
>gb|AC091656.3| Rattus norvegicus strain Brown Norway clone RP31-236J24, complete sequence Length = 132420 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 ctaaccttctctgcacctctc 443 ||||||||||||||||||||| Sbjct: 85278 ctaaccttctctgcacctctc 85258
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 501 ctgccgttggtggtggcggtggcgc 525 |||||| |||||||||||||||||| Sbjct: 861070 ctgccggtggtggtggcggtggcgc 861094
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 tggtggtggcggtggcgccgc 528 ||||||||||||||||||||| Sbjct: 4426154 tggtggtggcggtggcgccgc 4426134
>dbj|AP006584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1197G05 Length = 130823 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 tggtggtggcggtggcgccgc 528 ||||||||||||||||||||| Sbjct: 116547 tggtggtggcggtggcgccgc 116527
>dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0523A04 Length = 149049 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 tggtggtggcggtggcgccgc 528 ||||||||||||||||||||| Sbjct: 71738 tggtggtggcggtggcgccgc 71758
>dbj|AK098977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093D20, full insert sequence Length = 1864 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 tggtggtggcggtggcgccgc 528 ||||||||||||||||||||| Sbjct: 276 tggtggtggcggtggcgccgc 296
>dbj|AK072205.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013168D12, full insert sequence Length = 1880 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 tggtggtggcggtggcgccgc 528 ||||||||||||||||||||| Sbjct: 291 tggtggtggcggtggcgccgc 311
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 619 cgcgcgccgtcgccgtgctcg 639 ||||||||||||||||||||| Sbjct: 2665232 cgcgcgccgtcgccgtgctcg 2665212
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 501 ctgccgttggtggtggcggtggcgc 525 |||||| |||||||||||||||||| Sbjct: 9909157 ctgccgctggtggtggcggtggcgc 9909133
>gb|AC005271.1|AC005271 Homo sapiens chromosome 7 clone UWGC:g1564a040 from 7p14-15, complete sequence Length = 46074 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 aaaactggagagaaaaaagaa 212 ||||||||||||||||||||| Sbjct: 20399 aaaactggagagaaaaaagaa 20419
>emb|AL591771.1|CNS07EGO Human chromosome 14 DNA sequence BAC R-727C22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 154205 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 6 gatatttgtaaaaagaaaaacaata 30 ||||||| ||||||||||||||||| Sbjct: 119358 gatatttttaaaaagaaaaacaata 119382
>ref|XM_550262.1| Oryza sativa (japonica cultivar-group), mRNA Length = 873 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gtggtggcggtggcgccgcc 529 |||||||||||||||||||| Sbjct: 623 gtggtggcggtggcgccgcc 604
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 624 gccgtcgccgtgctcgccat 643 |||||||||||||||||||| Sbjct: 2755416 gccgtcgccgtgctcgccat 2755435
>ref|XM_483218.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2686 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tggtggtggcggtggcgccg 527 |||||||||||||||||||| Sbjct: 60 tggtggtggcggtggcgccg 79
>ref|XM_507284.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1506_F01.22 patrial mRNA Length = 2702 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tggtggtggcggtggcgccg 527 |||||||||||||||||||| Sbjct: 60 tggtggtggcggtggcgccg 79
>ref|NM_001003155.1| Canis familiaris parathyroid hormone receptor 1 (PTHR1), mRNA Length = 2177 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 gccgttggtggtggcggtgg 522 |||||||||||||||||||| Sbjct: 1870 gccgttggtggtggcggtgg 1851
>gb|AC159991.9| Mus musculus chromosome 1, clone RP23-413H17, complete sequence Length = 180715 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 468 atagtggttaatgcatgcctggct 491 ||||||||| |||||||||||||| Sbjct: 107785 atagtggttcatgcatgcctggct 107762
>gb|BC073322.1| Xenopus laevis hypothetical protein LOC443642, mRNA (cDNA clone IMAGE:5512075), partial cds Length = 726 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 623 cgccgtcgccgtgctcgcca 642 |||||||||||||||||||| Sbjct: 276 cgccgtcgccgtgctcgcca 295
>ref|XM_415031.1| PREDICTED: Gallus gallus similar to KIAA1264 protein (LOC416734), mRNA Length = 5343 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tggagagaaaaaagaagtta 216 |||||||||||||||||||| Sbjct: 2771 tggagagaaaaaagaagtta 2790
>gb|AY669077.1| Trypanosoma cruzi cleavage factor I 25 kDa gene, complete cds Length = 879 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 ggtggtggcggtggcgccgc 528 |||||||||||||||||||| Sbjct: 139 ggtggtggcggtggcgccgc 158
>gb|AC123947.5| Mus musculus BAC clone RP23-103O6 from chromosome 8, complete sequence Length = 187773 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tttgtaaaaagaaaaacaat 29 |||||||||||||||||||| Sbjct: 149702 tttgtaaaaagaaaaacaat 149721
>gb|AY459343.1| Oryza sativa (japonica cultivar-group) clone CL018501.1 R2R3-MYB gene region Length = 18906 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 gtggtggcggtggcgccgcc 529 |||||||||||||||||||| Sbjct: 18078 gtggtggcggtggcgccgcc 18059
>gb|AC127566.3| Mus musculus BAC clone RP24-187F3 from chromosome 5, complete sequence Length = 176559 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 atttgtaaaaagaaaaacaa 28 |||||||||||||||||||| Sbjct: 34505 atttgtaaaaagaaaaacaa 34524
>gb|AC130818.3| Mus musculus BAC clone RP23-89F9 from chromosome 8, complete sequence Length = 220285 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 cgttggtggtggcggtggcg 524 |||||||||||||||||||| Sbjct: 160942 cgttggtggtggcggtggcg 160961
>ref|XM_801353.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509509.40) partial mRNA Length = 879 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 ggtggtggcggtggcgccgc 528 |||||||||||||||||||| Sbjct: 139 ggtggtggcggtggcgccgc 158
>ref|XM_813334.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508207.220) partial mRNA Length = 879 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 ggtggtggcggtggcgccgc 528 |||||||||||||||||||| Sbjct: 139 ggtggtggcggtggcgccgc 158
>emb|CR955034.5| Wallaby DNA sequence from clone GRWB-130P10, complete sequence Length = 176287 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 aaactggagagaaaaaagaa 212 |||||||||||||||||||| Sbjct: 94272 aaactggagagaaaaaagaa 94253
>gb|AC124598.5| Mus musculus BAC clone RP23-22P3 from 13, complete sequence Length = 220624 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 caaaattcatcaagaacaca 312 |||||||||||||||||||| Sbjct: 120855 caaaattcatcaagaacaca 120874
>gb|AC122237.4| Mus musculus BAC clone RP23-143A15 from 8, complete sequence Length = 183867 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tttgtaaaaagaaaaacaat 29 |||||||||||||||||||| Sbjct: 1487 tttgtaaaaagaaaaacaat 1506
>gb|AC004142.2| Homo sapiens BAC clone CTB-118D7 from 7, complete sequence Length = 166126 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 aacttgatatttgtaaaaagaaaa 24 ||||||||||||| |||||||||| Sbjct: 98191 aacttgatatttgaaaaaagaaaa 98214
>emb|AL929472.21| Human DNA sequence from clone RP11-109P14 on chromosome 1 Contains a pseudogene similar to part of actinin alpha4 (ACTN4), a novel pseudogene, two genes for novel proteins (FLJ31434, FLJ45459), the gene for ischemia/reperfusion inducible protein (FLJ23476), the MTF1 gene for metal-regulatory transcription factor 1, a ribosomal protein S2 (RPS2) pseudogene, the 3' end of the INPP5B gene for 75kDa nositol polyphosphate-5-phosphatase, two novel genes and four CpG islands, complete sequence Length = 143060 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 taaaatcaccaaaaactgga 200 |||||||||||||||||||| Sbjct: 126731 taaaatcaccaaaaactgga 126750
>emb|AL451073.17| Human DNA sequence from clone RP11-384A24 on chromosome 6 Contains part of the PTPRK gene for protein tyrosine phosphatase receptor type K (R-PTP-KAPPA), complete sequence Length = 121208 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 taaaatcaccaaaaactgga 200 |||||||||||||||||||| Sbjct: 40691 taaaatcaccaaaaactgga 40672
>ref|XM_505483.1| Yarrowia lipolytica CLIB122, YALI0F16093g predicted mRNA Length = 1215 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 agccactcaagaacacgcag 117 |||||||||||||||||||| Sbjct: 384 agccactcaagaacacgcag 403
>gb|AY266303.2| Bacteriophage Aeh1, complete genome Length = 233234 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 aaaattcatcaagaacacaccgag 317 ||||||||||||||||| |||||| Sbjct: 2196 aaaattcatcaagaacaaaccgag 2173
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 614 gatgccgcgcgccgtcgccg 633 |||||||||||||||||||| Sbjct: 300931 gatgccgcgcgccgtcgccg 300950
>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29 Length = 292200 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 622 gcgccgtcgccgtgctcgcc 641 |||||||||||||||||||| Sbjct: 254463 gcgccgtcgccgtgctcgcc 254482
>emb|AL626804.10| Zebrafish DNA sequence from clone RP71-1H10 in linkage group 1 Contains a novel gene similar to human CTNNA2 (catenin (cadherin-associated protein), alpha 2) and three CpG islands, complete sequence Length = 149717 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 tctctaaaatcaccaaaaac 196 |||||||||||||||||||| Sbjct: 101026 tctctaaaatcaccaaaaac 101045
>emb|BX664614.11| Zebrafish DNA sequence from clone DKEY-148H10 in linkage group 6, complete sequence Length = 184225 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 agagaaaaaagaagttaaaa 219 |||||||||||||||||||| Sbjct: 176542 agagaaaaaagaagttaaaa 176561
>gb|AC068647.10| Homo sapiens 3 BAC RP11-64D22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 132745 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 atttgtaaaaagaaaaacaa 28 |||||||||||||||||||| Sbjct: 39757 atttgtaaaaagaaaaacaa 39738
>gb|AC091151.11| Homo sapiens chromosome 18, clone RP11-749H17, complete sequence Length = 170085 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 495 ccctgtctgccgttggtggtggcggtgg 522 ||||||||||| |||||||||| ||||| Sbjct: 64634 ccctgtctgcccttggtggtggtggtgg 64607
>emb|CR621052.1| full-length cDNA clone CS0DI056YH02 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1586 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 aaaaactggagagaaaaaag 210 |||||||||||||||||||| Sbjct: 139 aaaaactggagagaaaaaag 120
>gb|AC021517.9| Homo sapiens chromosome 18, clone RP11-309E23, complete sequence Length = 160904 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 495 ccctgtctgccgttggtggtggcggtgg 522 ||||||||||| |||||||||| ||||| Sbjct: 20649 ccctgtctgcccttggtggtggtggtgg 20676
>gb|AC022432.5| Homo sapiens chromosome 19 clone CTD-3030D20, complete sequence Length = 102223 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 gagagaaaaaagaagttaaa 218 |||||||||||||||||||| Sbjct: 46639 gagagaaaaaagaagttaaa 46658
>gb|AC156285.9| Mus musculus 6 BAC RP24-405H19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 145190 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaaaaagaagttaaaaggtt 223 |||||||||||||||||||| Sbjct: 134602 aaaaaagaagttaaaaggtt 134621
>gb|AC158673.10| Mus musculus 6 BAC RP23-124O23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 193221 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aaaaaagaagttaaaaggtt 223 |||||||||||||||||||| Sbjct: 126309 aaaaaagaagttaaaaggtt 126328
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 tggtggtggcggtggcgccg 527 |||||||||||||||||||| Sbjct: 705336 tggtggtggcggtggcgccg 705317
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tggtggtggcggtggcgccg 527 |||||||||||||||||||| Sbjct: 24858872 tggtggtggcggtggcgccg 24858891
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 gtggtggcggtggcgccgcc 529 |||||||||||||||||||| Sbjct: 3520028 gtggtggcggtggcgccgcc 3520047
>gb|AC008343.4|AC008343 Drosophila melanogaster, chromosome 2R, region 51F-52A, BAC clone BACR03D24, complete sequence Length = 158402 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 atttgtaaaaagaaaaacaa 28 |||||||||||||||||||| Sbjct: 147151 atttgtaaaaagaaaaacaa 147170
>gb|AC069259.14| Homo sapiens 3 BAC RP11-163H6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166530 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 atttgtaaaaagaaaaacaa 28 |||||||||||||||||||| Sbjct: 144765 atttgtaaaaagaaaaacaa 144784
>gb|AC008243.6|AC008243 Homo sapiens, clone RP11-45L9, complete sequence Length = 161509 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 gagagaaaaaagaagttaaa 218 |||||||||||||||||||| Sbjct: 86684 gagagaaaaaagaagttaaa 86703
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 gggagcgcgagggggaggaa 594 |||||||||||||||||||| Sbjct: 577871 gggagcgcgagggggaggaa 577890
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 agagaaaaaagaagttaaaa 219 |||||||||||||||||||| Sbjct: 744812 agagaaaaaagaagttaaaa 744793
>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1276_B06 Length = 175174 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 gtggtggcggtggcgccgcc 529 |||||||||||||||||||| Sbjct: 88096 gtggtggcggtggcgccgcc 88115
>emb|BX005004.12| Zebrafish DNA sequence from clone DKEY-11L18, complete sequence Length = 216131 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 aaaactggagagaaaaaagaagtt 215 |||||||||||||||||| ||||| Sbjct: 60998 aaaactggagagaaaaaataagtt 60975
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0049I08 Length = 144379 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aaaaagaaaaacaatagcga 34 |||||||||||||||||||| Sbjct: 37716 aaaaagaaaaacaatagcga 37697
>dbj|AB025627.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNI5 Length = 21011 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 482 atgcctggctccaccctgtctgcc 505 ||||||||||||| |||||||||| Sbjct: 14070 atgcctggctccaacctgtctgcc 14093
>dbj|AP004190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1506_F01 Length = 121202 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tggtggtggcggtggcgccg 527 |||||||||||||||||||| Sbjct: 63318 tggtggtggcggtggcgccg 63337
>dbj|AK106102.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-C07, full insert sequence Length = 1056 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 tggtggtggcggtggcgccg 527 |||||||||||||||||||| Sbjct: 367 tggtggtggcggtggcgccg 348
>dbj|AK065539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030N03, full insert sequence Length = 2801 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tggtggtggcggtggcgccg 527 |||||||||||||||||||| Sbjct: 159 tggtggtggcggtggcgccg 178
>dbj|AK065218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002G11, full insert sequence Length = 2803 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tggtggtggcggtggcgccg 527 |||||||||||||||||||| Sbjct: 177 tggtggtggcggtggcgccg 196
>gb|AF167095.1|AF167095 Canis familiaris parathyroid hormone receptor-1 (PTH1) mRNA, complete cds Length = 2177 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 gccgttggtggtggcggtgg 522 |||||||||||||||||||| Sbjct: 1870 gccgttggtggtggcggtgg 1851
>gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, region 52A4-52B4, P1 clones BACR48C01 and DS08592, complete sequence Length = 192366 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 atttgtaaaaagaaaaacaa 28 |||||||||||||||||||| Sbjct: 10045 atttgtaaaaagaaaaacaa 10064
>gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40 of 73 of the complete sequence Length = 271178 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 atttgtaaaaagaaaaacaa 28 |||||||||||||||||||| Sbjct: 87403 atttgtaaaaagaaaaacaa 87422
>dbj|AP000806.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-713C6, complete sequence Length = 120480 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 aaaaactggagagaaaaaag 210 |||||||||||||||||||| Sbjct: 22613 aaaaactggagagaaaaaag 22594
>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028E10 Length = 140791 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 gtggtggcggtggcgccgcc 529 |||||||||||||||||||| Sbjct: 106788 gtggtggcggtggcgccgcc 106807
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 tggtggtggcggtggcgccg 527 |||||||||||||||||||| Sbjct: 705336 tggtggtggcggtggcgccg 705317
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tggtggtggcggtggcgccg 527 |||||||||||||||||||| Sbjct: 37636 tggtggtggcggtggcgccg 37655
>emb|CR383674.8| Zebrafish DNA sequence from clone DKEY-17G17 in linkage group 25, complete sequence Length = 212086 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 atttgtaaaaagaaaaacaa 28 |||||||||||||||||||| Sbjct: 106680 atttgtaaaaagaaaaacaa 106699
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 agccactcaagaacacgcag 117 |||||||||||||||||||| Sbjct: 2161141 agccactcaagaacacgcag 2161122
>emb|AL773586.6| Mouse DNA sequence from clone RP23-18P19 on chromosome 2, complete sequence Length = 208141 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 caacattgcaaaattcatca 304 |||||||||||||||||||| Sbjct: 15916 caacattgcaaaattcatca 15897 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,293,799 Number of Sequences: 3902068 Number of extensions: 7293799 Number of successful extensions: 183352 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 181323 Number of HSP's gapped (non-prelim): 2029 length of query: 665 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 642 effective length of database: 17,143,297,704 effective search space: 11005997125968 effective search space used: 11005997125968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
