ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags23a13 |
|---|---|
| Clone Library Name | barley_pub |
>RD23D_ARATH (Q84L30) Putative DNA repair protein RAD23-4 (RAD23-like protein 4)| (AtRAD23-4) Length = 378 Score = 177 bits (449), Expect = 2e-44 Identities = 95/151 (62%), Positives = 109/151 (72%) Frame = -2 Query: 623 LFPQGVPSXXXXXXXXXXXXXXXXXALRQLPQFQALLALVQANPQILQPMLQELGKQNPQ 444 LFPQG+P+ LR QFQAL A+VQANPQILQPMLQELGKQNPQ Sbjct: 236 LFPQGMPAADAGAGAGNLDF------LRNSQQFQALRAMVQANPQILQPMLQELGKQNPQ 289 Query: 443 ILRLIQENQAEFLRLVNETPESXXXXXXXXXXXAQMPQAVQVTPEEREAIQRLESMGFNR 264 ++RLIQE+QA+FLRL+NE E MPQAV VTPEEREAI+RLE MGF+R Sbjct: 290 LVRLIQEHQADFLRLINEPVEGEENVMEQLEAA--MPQAVTVTPEEREAIERLEGMGFDR 347 Query: 263 ELVLEVFFACNRDEELAANYLLDHGHEFEEQ 171 +VLEVFFACN++EELAANYLLDH HEFE+Q Sbjct: 348 AMVLEVFFACNKNEELAANYLLDHMHEFEDQ 378
>RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-like protein 3)| (AtRAD23-3) Length = 419 Score = 169 bits (427), Expect = 8e-42 Identities = 91/153 (59%), Positives = 106/153 (69%), Gaps = 3/153 (1%) Frame = -2 Query: 623 LFPQGVPSXXXXXXXXXXXXXXXXXALRQLPQFQALLALVQANPQILQPMLQELGKQNPQ 444 LFPQG+P+ LR QFQAL A+VQANPQ+LQPMLQELGKQNP Sbjct: 273 LFPQGLPNVGGNPGAGTLDF------LRNSQQFQALRAMVQANPQVLQPMLQELGKQNPN 326 Query: 443 ILRLIQENQAEFLRLVNETPESXXXXXXXX---XXXAQMPQAVQVTPEEREAIQRLESMG 273 ++RLIQ++QA+FLRL+NE E PQA+QVT EEREAI+RLE+MG Sbjct: 327 LMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMG 386 Query: 272 FNRELVLEVFFACNRDEELAANYLLDHGHEFEE 174 F R LVLEVFFACN++EELAANYLLDH HEFEE Sbjct: 387 FERALVLEVFFACNKNEELAANYLLDHMHEFEE 419
>RAD23_ORYSA (Q40742) Putative DNA repair protein RAD23 (OsRAD23)| Length = 392 Score = 168 bits (426), Expect = 1e-41 Identities = 88/151 (58%), Positives = 105/151 (69%) Frame = -2 Query: 623 LFPQGVPSXXXXXXXXXXXXXXXXXALRQLPQFQALLALVQANPQILQPMLQELGKQNPQ 444 LFPQ +P+ LR QF+ LL+LVQANPQILQP+LQELGKQNPQ Sbjct: 244 LFPQALPNASTDAAGLGNLDA-----LRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQ 298 Query: 443 ILRLIQENQAEFLRLVNETPESXXXXXXXXXXXAQMPQAVQVTPEEREAIQRLESMGFNR 264 IL+LIQENQAEFL L+NE E MPQ + VTPEE EAI RLE+MGF+R Sbjct: 299 ILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDR 358 Query: 263 ELVLEVFFACNRDEELAANYLLDHGHEFEEQ 171 LVL+VFFACN+DE+LAANYLLDH +EF+++ Sbjct: 359 ALVLDVFFACNKDEQLAANYLLDHMNEFDDE 389
>RD23A_ARATH (Q84L33) Putative DNA repair protein RAD23-1 (RAD23-like protein 1)| (AtRAD23-1) Length = 371 Score = 150 bits (380), Expect = 2e-36 Identities = 79/125 (63%), Positives = 95/125 (76%), Gaps = 1/125 (0%) Frame = -2 Query: 545 LRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPE-SXXX 369 LR QFQ L +V +NPQILQPMLQELGKQNPQ+LRLIQENQAEFL+LVNE E S Sbjct: 247 LRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGE 306 Query: 368 XXXXXXXXAQMPQAVQVTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHG 189 +MP A+ VTP E+EAIQRLE+MGF+R LV+E F AC+R+EELAANYLL++ Sbjct: 307 GDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENS 366 Query: 188 HEFEE 174 +FE+ Sbjct: 367 GDFED 371
>RD23B_ARATH (Q84L32) Putative DNA repair protein RAD23-2 (RAD23-like protein 2)| (AtRAD23-2) Length = 368 Score = 149 bits (376), Expect = 7e-36 Identities = 76/125 (60%), Positives = 97/125 (77%), Gaps = 1/125 (0%) Frame = -2 Query: 545 LRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPE-SXXX 369 LR QFQ L ++V +NPQILQPMLQELGKQNPQ+LRLIQENQAEFL+L+NE E S Sbjct: 244 LRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGD 303 Query: 368 XXXXXXXXAQMPQAVQVTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHG 189 +MP +V VTPEE+E+I+RLE+MGF+R +V+E F +C+R+EELAANYLL+H Sbjct: 304 VDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHS 363 Query: 188 HEFEE 174 +FE+ Sbjct: 364 ADFED 368
>RHP23_SCHPO (O74803) UV excision repair protein rhp23 (RAD23 homolog)| Length = 368 Score = 105 bits (262), Expect = 1e-22 Identities = 51/125 (40%), Positives = 80/125 (64%) Frame = -2 Query: 545 LRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESXXXX 366 LR +PQFQ L +VQ NPQ+L+ +LQ++G+ +P + + I +N FL+L+ E E Sbjct: 250 LRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAEGAEGESAL 309 Query: 365 XXXXXXXAQMPQAVQVTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGH 186 +Q+T EE E+I RL +GF+R +V++ + AC+++EELAANYL +HGH Sbjct: 310 PSGGIQ-------IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGH 362 Query: 185 EFEEQ 171 E E++ Sbjct: 363 ESEDE 367
>RD23A_MOUSE (P54726) UV excision repair protein RAD23 homolog A (mHR23A)| Length = 363 Score = 104 bits (259), Expect = 2e-22 Identities = 51/129 (39%), Positives = 83/129 (64%), Gaps = 6/129 (4%) Frame = -2 Query: 545 LRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETP----ES 378 LR PQFQ + ++Q NP +L +LQ+LG++NPQ+L+ I +Q +F++++NE P + Sbjct: 235 LRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADI 294 Query: 377 XXXXXXXXXXXAQMPQA--VQVTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANY 204 + PQ +QVTP+E+EAI+RL+++GF LV++ +FAC ++E LAAN+ Sbjct: 295 SDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANF 354 Query: 203 LLDHGHEFE 177 LL + E Sbjct: 355 LLSQNFDDE 363
>RD23A_HUMAN (P54725) UV excision repair protein RAD23 homolog A (hHR23A)| Length = 363 Score = 104 bits (259), Expect = 2e-22 Identities = 51/129 (39%), Positives = 83/129 (64%), Gaps = 6/129 (4%) Frame = -2 Query: 545 LRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETP----ES 378 LR PQFQ + ++Q NP +L +LQ+LG++NPQ+L+ I +Q +F++++NE P + Sbjct: 235 LRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADI 294 Query: 377 XXXXXXXXXXXAQMPQA--VQVTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANY 204 + PQ +QVTP+E+EAI+RL+++GF LV++ +FAC ++E LAAN+ Sbjct: 295 SDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANF 354 Query: 203 LLDHGHEFE 177 LL + E Sbjct: 355 LLSQNFDDE 363
>RD23B_HUMAN (P54727) UV excision repair protein RAD23 homolog B (hHR23B) (XP-C| repair-complementing complex 58 kDa protein) (p58) Length = 409 Score = 99.0 bits (245), Expect = 1e-20 Identities = 48/129 (37%), Positives = 82/129 (63%), Gaps = 8/129 (6%) Frame = -2 Query: 545 LRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNE-TPESXXX 369 LR PQFQ + ++Q NP +L +LQ++G++NPQ+L+ I ++Q F++++NE E+ Sbjct: 279 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 338 Query: 368 XXXXXXXXAQMPQA-------VQVTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAA 210 + +A +QVTP+E+EAI+RL+++GF LV++ +FAC ++E LAA Sbjct: 339 GGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAA 398 Query: 209 NYLLDHGHE 183 N+LL + Sbjct: 399 NFLLQQNFD 407
>RD23B_MOUSE (P54728) UV excision repair protein RAD23 homolog B (mHR23B) (XP-C| repair-complementing complex 58 kDa protein) (p58) Length = 416 Score = 94.7 bits (234), Expect = 2e-19 Identities = 46/136 (33%), Positives = 79/136 (58%), Gaps = 15/136 (11%) Frame = -2 Query: 545 LRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESXXXX 366 LR PQFQ + ++Q NP +L +LQ++G++NPQ+L+ I ++Q F++++NE + Sbjct: 279 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQ 338 Query: 365 XXX---------------XXXXAQMPQAVQVTPEEREAIQRLESMGFNRELVLEVFFACN 231 + +QVTP+E+EAI+RL+++GF LV++ +FAC Sbjct: 339 GGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE 398 Query: 230 RDEELAANYLLDHGHE 183 ++E LAAN+LL + Sbjct: 399 KNENLAANFLLQQNFD 414
>RAD23_YEAST (P32628) UV excision repair protein RAD23| Length = 398 Score = 60.8 bits (146), Expect = 3e-09 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 23/133 (17%) Frame = -2 Query: 521 ALLALVQANPQILQPMLQELGKQNPQI---------------LRLIQENQAEFLRLVNET 387 +L +V NP+ L P+L+ + + PQ+ L + +N + + ++ Sbjct: 264 SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDM 323 Query: 386 PESXXXXXXXXXXXAQMPQA-------VQVTPEEREAIQRLESMGFNRELVLEVFFACNR 228 E A + Q V TPE+ +AI RL +GF R+LV++V+FAC++ Sbjct: 324 VEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDK 383 Query: 227 DEELAANYLL-DH 192 +EE AAN L DH Sbjct: 384 NEEAAANILFSDH 396
>UBP5_MOUSE (P56399) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 33.9 bits (76), Expect = 0.40 Identities = 19/70 (27%), Positives = 34/70 (48%) Frame = -2 Query: 314 PEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHEFEEQQ*MLDWCYRRKT 135 P + + + SMGF+R+ L+ A N E A +++ H + + + M R Sbjct: 722 PPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAA 781 Query: 134 ESVTEAVQFG 105 ES++E+V G Sbjct: 782 ESISESVPVG 791
>YBE7_YEAST (P34216) Protein YBL047C| Length = 1381 Score = 33.1 bits (74), Expect = 0.68 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = -2 Query: 332 QAVQVTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLD 195 + V TP+ A++ L MGF E CN D E A N+LLD Sbjct: 1335 RGVATTPKSL-AVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLD 1379
>UBP5_HUMAN (P45974) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 32.7 bits (73), Expect = 0.89 Identities = 18/70 (25%), Positives = 34/70 (48%) Frame = -2 Query: 314 PEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHEFEEQQ*MLDWCYRRKT 135 P + + + SMGF+R+ L+ A N E A +++ H + + + M R Sbjct: 722 PPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAA 781 Query: 134 ESVTEAVQFG 105 +S++E+V G Sbjct: 782 DSISESVPVG 791
>NISB_LACLA (P20103) Nisin biosynthesis protein nisB| Length = 993 Score = 32.7 bits (73), Expect = 0.89 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = -2 Query: 311 EEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLD 195 E+R +++R E + FN L L+++ + NR E +YL D Sbjct: 721 EKRVSVERREKLPFNEWLYLKLYISINRQNEFLLSYLPD 759
>RIR1_HHV11 (P08543) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) (136 kDa subunit) Length = 1137 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = -2 Query: 335 PQAVQVTPEEREAIQRLESMGFNRE--LVLEVFFACNRDE 222 P +++TPE EA+ R NRE L+LE F C R+E Sbjct: 313 PVPLELTPENAEAVARFLGDAVNREPALMLEYFCRCAREE 352
>UBAP1_HUMAN (Q9NZ09) Ubiquitin-associated protein 1 (UBAP)| Length = 502 Score = 30.4 bits (67), Expect = 4.4 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = -2 Query: 320 VTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHEFEE 174 ++P ER+ ++ + +MG++ E VL + E +YL HG E+ Sbjct: 388 LSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEK 436
>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor| Length = 920 Score = 30.0 bits (66), Expect = 5.8 Identities = 17/47 (36%), Positives = 19/47 (40%) Frame = -1 Query: 537 ASTVPSTACIGPG*SPNPTANASRAGETKSTDPAVDSGKSG*VSPPG 397 A +P +GP P P A GE P D GK G PPG Sbjct: 349 ARGLPGKGLLGP---PGPAGAAGLPGEVGRAGPPGDPGKRGPPGPPG 392
>RIR1_HHV23 (P09853) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) (136 kDa subunit) Length = 1144 Score = 30.0 bits (66), Expect = 5.8 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = -2 Query: 335 PQAVQVTPEEREAIQRLESMGFNRE--LVLEVFFACNRDE 222 P +++TPE EA+ R +RE L+LE F C R+E Sbjct: 320 PVPLELTPENAEAVARFLGDAVDREPALMLEYFCRCAREE 359
>IF2_RHOBA (Q7URR0) Translation initiation factor IF-2| Length = 1038 Score = 29.6 bits (65), Expect = 7.6 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = -3 Query: 283 SQWGSIVSLCWRSSLHATGMKNWLPTIFWIMATS--LRNNNRC*IGVTVERQSQ 128 S+WG V + S+ TGM L T+ I + N NR +GV +E + Q Sbjct: 662 SEWGGDVEIVRTSATQGTGMDELLDTLLTIAELNEYSANPNRSALGVCLESEQQ 715
>UBAP1_RAT (Q5XIS7) Ubiquitin-associated protein 1 (UBAP)| Length = 502 Score = 29.3 bits (64), Expect = 9.9 Identities = 13/49 (26%), Positives = 26/49 (53%) Frame = -2 Query: 320 VTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHEFEE 174 ++P ER+ ++ + +MG++ + VL + E +YL HG E+ Sbjct: 388 LSPSERQCVETVVNMGYSYDCVLRAMKKKGENIEQILDYLFAHGQLCEK 436
>UBAP1_MOUSE (Q8BH48) Ubiquitin-associated protein 1 (UBAP)| (Ubiquitin-associated protein NAG20) Length = 502 Score = 29.3 bits (64), Expect = 9.9 Identities = 13/49 (26%), Positives = 26/49 (53%) Frame = -2 Query: 320 VTPEEREAIQRLESMGFNRELVLEVFFACNRDEELAANYLLDHGHEFEE 174 ++P ER+ ++ + +MG++ + VL + E +YL HG E+ Sbjct: 388 LSPSERQCVETVVNMGYSYDCVLRAMRKKGENIEQILDYLFAHGQLCEK 436 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,266,744 Number of Sequences: 219361 Number of extensions: 1567608 Number of successful extensions: 4721 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4356 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4705 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
