ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22l12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185139.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1252 Score = 208 bits (105), Expect = 2e-50 Identities = 275/329 (83%), Gaps = 2/329 (0%) Strand = Plus / Minus Query: 400 tgcctcaatttgatcaaaatctagatctacaaagctctccttgccaaaaagtgtcatctg 459 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||| Sbjct: 981 tgcctcaatttgatcaaaatctagatccacaaagctctccttcccaaaaagtgtcaactg 922 Query: 460 gacagtaaccttcttatttttacgaattacttccagaagagagccagtgaagcctgcaaa 519 | ||| ||||||||||||| ||| | |||||||| || || |||||||||||| |||| Sbjct: 921 aagagtggccttcttatttttgcgattcacttccaggagtgaaccagtgaagccttcaaa 862 Query: 520 aggcccggagagaacatgaacactggcacccgagcgtaaaagtgtcgttgctggaggcac 579 |||||| || |||||||||||||| ||||| | ||||||||| | || | || | ||| Sbjct: 861 aggcccagatagaacatgaacactagcaccag-gcgtaaaagcattgtggttgctgccac 803 Query: 580 cttttgaagttgatttcttgacctgtttcttgatcttattaattaacataagttcagagt 639 ||||||| ||| |||||| | |||| ||||||||||||| |||| ||| |||||||| | Sbjct: 802 cttttgagattggtttcttaaactgtctcttgatcttattcattagcatgagttcagaat 743 Query: 640 cttcaacaggtttgctaaaggaaccgacattatttccagttttccaggtcttcaaattct 699 ||||||| |||||| | || || ||||| | |||| ||||||| |||||||| ||| Sbjct: 742 cttcaacgggtttgttgaaagactcgacaattcctcca-ttttccatttcttcaaactct 684 Query: 700 ttgtcaactttctcttgttcctccttttc 728 |||||||| ||||||| ||||||||||| Sbjct: 683 ctgtcaactctctcttgctcctccttttc 655
>dbj|AK058472.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B11, full insert sequence Length = 1380 Score = 208 bits (105), Expect = 2e-50 Identities = 275/329 (83%), Gaps = 2/329 (0%) Strand = Plus / Minus Query: 400 tgcctcaatttgatcaaaatctagatctacaaagctctccttgccaaaaagtgtcatctg 459 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||| Sbjct: 1026 tgcctcaatttgatcaaaatctagatccacaaagctctccttcccaaaaagtgtcaactg 967 Query: 460 gacagtaaccttcttatttttacgaattacttccagaagagagccagtgaagcctgcaaa 519 | ||| ||||||||||||| ||| | |||||||| || || |||||||||||| |||| Sbjct: 966 aagagtggccttcttatttttgcgattcacttccaggagtgaaccagtgaagccttcaaa 907 Query: 520 aggcccggagagaacatgaacactggcacccgagcgtaaaagtgtcgttgctggaggcac 579 |||||| || |||||||||||||| ||||| | ||||||||| | || | || | ||| Sbjct: 906 aggcccagatagaacatgaacactagcaccag-gcgtaaaagcattgtggttgctgccac 848 Query: 580 cttttgaagttgatttcttgacctgtttcttgatcttattaattaacataagttcagagt 639 ||||||| ||| |||||| | |||| ||||||||||||| |||| ||| |||||||| | Sbjct: 847 cttttgagattggtttcttaaactgtctcttgatcttattcattagcatgagttcagaat 788 Query: 640 cttcaacaggtttgctaaaggaaccgacattatttccagttttccaggtcttcaaattct 699 ||||||| |||||| | || || ||||| | |||| ||||||| |||||||| ||| Sbjct: 787 cttcaacgggtttgttgaaagactcgacaattcctcca-ttttccatttcttcaaactct 729 Query: 700 ttgtcaactttctcttgttcctccttttc 728 |||||||| ||||||| ||||||||||| Sbjct: 728 ctgtcaactctctcttgctcctccttttc 700
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 135 bits (68), Expect = 2e-28 Identities = 217/264 (82%), Gaps = 2/264 (0%) Strand = Plus / Minus Query: 465 taaccttcttatttttacgaattacttccagaagagagccagtgaagcctgcaaaaggcc 524 |||||||||||||||| ||| | |||||||| || || |||||||||||| ||||||||| Sbjct: 34369344 taaccttcttatttttgcgattcacttccaggagtgaaccagtgaagccttcaaaaggcc 34369285 Query: 525 cggagagaacatgaacactggcacccgagcgtaaaagtgtcgttgctggaggcacctttt 584 | || |||||||||||||| ||||| | ||||||||| | || | || | |||||||| Sbjct: 34369284 cagatagaacatgaacactagcaccag-gcgtaaaagcattgtggttgctgccacctttt 34369226 Query: 585 gaagttgatttcttgacctgtttcttgatcttattaattaacataagttcagagtcttca 644 || ||| |||||| | |||| ||||||||||||| |||| ||| |||||||| |||||| Sbjct: 34369225 gagattggtttcttaaactgtctcttgatcttattcattagcatgagttcagaatcttca 34369166 Query: 645 acaggtttgctaaaggaaccgacattatttccagttttccaggtcttcaaattctttgtc 704 || |||||| | || || ||||| | |||| ||||||| |||||||| ||| |||| Sbjct: 34369165 acgggtttgttgaaagactcgacaattcctcca-ttttccatttcttcaaactctctgtc 34369107 Query: 705 aactttctcttgttcctccttttc 728 |||| ||||||| ||||||||||| Sbjct: 34369106 aactctctcttgctcctccttttc 34369083 Score = 95.6 bits (48), Expect = 2e-16 Identities = 54/56 (96%) Strand = Plus / Minus Query: 400 tgcctcaatttgatcaaaatctagatctacaaagctctccttgccaaaaagtgtca 455 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct: 34369541 tgcctcaatttgatcaaaatctagatccacaaagctctccttcccaaaaagtgtca 34369486
>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete sequence Length = 115393 Score = 135 bits (68), Expect = 2e-28 Identities = 217/264 (82%), Gaps = 2/264 (0%) Strand = Plus / Plus Query: 465 taaccttcttatttttacgaattacttccagaagagagccagtgaagcctgcaaaaggcc 524 |||||||||||||||| ||| | |||||||| || || |||||||||||| ||||||||| Sbjct: 80350 taaccttcttatttttgcgattcacttccaggagtgaaccagtgaagccttcaaaaggcc 80409 Query: 525 cggagagaacatgaacactggcacccgagcgtaaaagtgtcgttgctggaggcacctttt 584 | || |||||||||||||| ||||| | ||||||||| | || | || | |||||||| Sbjct: 80410 cagatagaacatgaacactagcaccag-gcgtaaaagcattgtggttgctgccacctttt 80468 Query: 585 gaagttgatttcttgacctgtttcttgatcttattaattaacataagttcagagtcttca 644 || ||| |||||| | |||| ||||||||||||| |||| ||| |||||||| |||||| Sbjct: 80469 gagattggtttcttaaactgtctcttgatcttattcattagcatgagttcagaatcttca 80528 Query: 645 acaggtttgctaaaggaaccgacattatttccagttttccaggtcttcaaattctttgtc 704 || |||||| | || || ||||| | |||| ||||||| |||||||| ||| |||| Sbjct: 80529 acgggtttgttgaaagactcgacaattcctcca-ttttccatttcttcaaactctctgtc 80587 Query: 705 aactttctcttgttcctccttttc 728 |||| ||||||| ||||||||||| Sbjct: 80588 aactctctcttgctcctccttttc 80611 Score = 95.6 bits (48), Expect = 2e-16 Identities = 54/56 (96%) Strand = Plus / Plus Query: 400 tgcctcaatttgatcaaaatctagatctacaaagctctccttgccaaaaagtgtca 455 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct: 80153 tgcctcaatttgatcaaaatctagatccacaaagctctccttcccaaaaagtgtca 80208
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 135 bits (68), Expect = 2e-28 Identities = 217/264 (82%), Gaps = 2/264 (0%) Strand = Plus / Minus Query: 465 taaccttcttatttttacgaattacttccagaagagagccagtgaagcctgcaaaaggcc 524 |||||||||||||||| ||| | |||||||| || || |||||||||||| ||||||||| Sbjct: 34459816 taaccttcttatttttgcgattcacttccaggagtgaaccagtgaagccttcaaaaggcc 34459757 Query: 525 cggagagaacatgaacactggcacccgagcgtaaaagtgtcgttgctggaggcacctttt 584 | || |||||||||||||| ||||| | ||||||||| | || | || | |||||||| Sbjct: 34459756 cagatagaacatgaacactagcaccag-gcgtaaaagcattgtggttgctgccacctttt 34459698 Query: 585 gaagttgatttcttgacctgtttcttgatcttattaattaacataagttcagagtcttca 644 || ||| |||||| | |||| ||||||||||||| |||| ||| |||||||| |||||| Sbjct: 34459697 gagattggtttcttaaactgtctcttgatcttattcattagcatgagttcagaatcttca 34459638 Query: 645 acaggtttgctaaaggaaccgacattatttccagttttccaggtcttcaaattctttgtc 704 || |||||| | || || ||||| | |||| ||||||| |||||||| ||| |||| Sbjct: 34459637 acgggtttgttgaaagactcgacaattcctcca-ttttccatttcttcaaactctctgtc 34459579 Query: 705 aactttctcttgttcctccttttc 728 |||| ||||||| ||||||||||| Sbjct: 34459578 aactctctcttgctcctccttttc 34459555 Score = 95.6 bits (48), Expect = 2e-16 Identities = 54/56 (96%) Strand = Plus / Minus Query: 400 tgcctcaatttgatcaaaatctagatctacaaagctctccttgccaaaaagtgtca 455 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct: 34460013 tgcctcaatttgatcaaaatctagatccacaaagctctccttcccaaaaagtgtca 34459958
>gb|AC154881.6| Mus musculus chromosome 15, clone RP24-259H19, complete sequence Length = 180231 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 700 ttgtcaactttctcttgttcct 721 |||||||||||||||||||||| Sbjct: 47324 ttgtcaactttctcttgttcct 47345
>dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H01, TM0541, complete sequence Length = 110985 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 711 ctcttgttcctccttttccttt 732 |||||||||||||||||||||| Sbjct: 82180 ctcttgttcctccttttccttt 82201
>ref|XM_744991.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g03340) partial mRNA Length = 606 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 708 tttctcttgttcctccttttccttt 732 |||||||| |||||||||||||||| Sbjct: 258 tttctctttttcctccttttccttt 234
>gb|AC122260.3| Mus musculus BAC clone RP23-185M15 from 6, complete sequence Length = 203877 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 tgtggctcacaggctaactat 240 ||||||||||||||||||||| Sbjct: 129771 tgtggctcacaggctaactat 129791
>emb|CR762497.17| Zebrafish DNA sequence from clone DKEY-162B3 in linkage group 13, complete sequence Length = 258636 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 691 tcaaattctttgtcaactttctctt 715 ||||||||||| ||||||||||||| Sbjct: 223244 tcaaattctttttcaactttctctt 223268
>emb|CR860266.1| Pongo pygmaeus mRNA; cDNA DKFZp459K215 (from clone DKFZp459K215) Length = 4090 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 708 tttctcttgttcctccttttccttt 732 |||||||| |||||||||||||||| Sbjct: 2407 tttctctttttcctccttttccttt 2431
>emb|CR749674.1| Homo sapiens mRNA; cDNA DKFZp667O0311 (from clone DKFZp667O0311) Length = 2029 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 708 tttctcttgttcctccttttccttt 732 |||||||| |||||||||||||||| Sbjct: 269 tttctctttttcctccttttccttt 293
>gb|AC117441.3| Homo sapiens 3 BAC RP11-803L18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 94888 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 239 attctgttgtgtttgtcacccaatc 263 |||||||||| |||||||||||||| Sbjct: 77788 attctgttgtttttgtcacccaatc 77812
>gb|AC140385.3| Mus musculus BAC clone RP23-173G20 from chromosome 6, complete sequence Length = 179564 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 tgtggctcacaggctaactat 240 ||||||||||||||||||||| Sbjct: 175505 tgtggctcacaggctaactat 175485
>dbj|AK027192.1| Homo sapiens cDNA: FLJ23539 fis, clone LNG08101, highly similar to AF126246 Homo sapiens tip-associated protein TAP mRNA Length = 2256 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 708 tttctcttgttcctccttttccttt 732 |||||||| |||||||||||||||| Sbjct: 564 tttctctttttcctccttttccttt 588
>emb|AL772388.35| Zebrafish DNA sequence from clone CH211-202M22 in linkage group 13, complete sequence Length = 135274 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 691 tcaaattctttgtcaactttctctt 715 ||||||||||| ||||||||||||| Sbjct: 19614 tcaaattctttttcaactttctctt 19638
>dbj|AP000711.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-51K10, complete sequence Length = 111591 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 441 tgccaaaaagtgtcatctgga 461 ||||||||||||||||||||| Sbjct: 371 tgccaaaaagtgtcatctgga 391
>dbj|AP002342.3| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2258N2, complete sequences Length = 174548 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 441 tgccaaaaagtgtcatctgga 461 ||||||||||||||||||||| Sbjct: 172477 tgccaaaaagtgtcatctgga 172497
>emb|BX001007.6| Zebrafish DNA sequence from clone DKEY-97C13, complete sequence Length = 113198 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 691 tcaaattctttgtcaactttctctt 715 ||||||||||| ||||||||||||| Sbjct: 94406 tcaaattctttttcaactttctctt 94430
>dbj|AB209915.1| Homo sapiens mRNA for nuclear RNA export factor 1 variant protein Length = 4077 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 708 tttctcttgttcctccttttccttt 732 |||||||| |||||||||||||||| Sbjct: 2364 tttctctttttcctccttttccttt 2388
>dbj|AP001160.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-727F15, complete sequences Length = 184802 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 708 tttctcttgttcctccttttccttt 732 |||||||| |||||||||||||||| Sbjct: 76401 tttctctttttcctccttttccttt 76377 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,642,288 Number of Sequences: 3902068 Number of extensions: 7642288 Number of successful extensions: 150808 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 150660 Number of HSP's gapped (non-prelim): 148 length of query: 732 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 709 effective length of database: 17,143,297,704 effective search space: 12154598072136 effective search space used: 12154598072136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
