ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags23a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHK_PARUW (Q6MFC0) Probable phosphoketolase (EC 4.1.2.-) 30 4.4
2HISZ_AQUAE (O67223) ATP phosphoribosyltransferase regulatory sub... 30 5.7
3PHK2_ANASP (Q8YTZ6) Probable phosphoketolase 2 (EC 4.1.2.-) 30 7.5
4PHK_RHILO (Q988V7) Probable phosphoketolase (EC 4.1.2.-) 29 9.8

>PHK_PARUW (Q6MFC0) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 798

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -3

Query: 348 YWA---FLRLKQNHLLNKPWNREDENISSCRPKGYDQGRVKPECQPSYCHLDIRDKSGDY 178
           YW    +L + Q +LL+ P  ++  +I   +P+        P     Y HL+   K  D 
Sbjct: 26  YWRAANYLSVGQIYLLDNPLLKKPLSIKDIKPRLLGHWGTTPGLNFIYVHLNRIIKKFDL 85

Query: 177 HQILLVLPGH 148
             I L+ PGH
Sbjct: 86  DMIYLIGPGH 95



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>HISZ_AQUAE (O67223) ATP phosphoribosyltransferase regulatory subunit|
          Length = 383

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = -2

Query: 223 ALVLSSRYQRQKWGLSSDSTSTAWAPIQSRKLIVNSCHWAEARSCNHVFTYGKLFTLDVL 44
           A+     Y ++ +GL  D T+         +++    H    +    V+ +GK+F+LD  
Sbjct: 61  AITFKDSYTKESFGLRLDFTT---------QVVRTISHLRNVKLPERVYYFGKVFSLDRR 111

Query: 43  GFKNLE--VEFLASRN 2
           GF+ L+  VE +  ++
Sbjct: 112 GFEKLQTGVELIGEKS 127



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>PHK2_ANASP (Q8YTZ6) Probable phosphoketolase 2 (EC 4.1.2.-)|
          Length = 793

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = -3

Query: 348 YWA---FLRLKQNHLLNKPWNREDENISSCRPKGYDQGRVKPECQPSYCHLDIRDKSGDY 178
           YW    +L + Q +LL+ P  RE  N    +P+        P     Y HL+   K  D 
Sbjct: 23  YWRAANYLSVGQIYLLDNPLLREPLNKEHVKPRLLGHWGTTPGLNFIYVHLNRIIKKYDQ 82

Query: 177 HQILLVLPGH 148
             + +  PGH
Sbjct: 83  SMVYIAGPGH 92



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>PHK_RHILO (Q988V7) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 807

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = -3

Query: 348 YWA---FLRLKQNHLLNKPWNREDENISSCRPKGYDQGRVKPECQPSYCHLDIRDKSGDY 178
           YW    +L + Q +LL+ P  RE   +   +P+        P     Y HL+   +  D 
Sbjct: 25  YWRAANYLTIGQIYLLDNPLLREPLRLEHVKPRLLGHWGTSPGLSFIYAHLNRAIRLRDA 84

Query: 177 HQILLVLPGH 148
           + I +  PGH
Sbjct: 85  NVIYICGPGH 94


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,085,341
Number of Sequences: 219361
Number of extensions: 2004162
Number of successful extensions: 4946
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4946
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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