ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22k16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478211.1| Oryza sativa (japonica cultivar-group), mRNA 492 e-136
2ref|XM_506350.1| PREDICTED Oryza sativa (japonica cultivar-group... 492 e-136
3dbj|AK065801.1| Oryza sativa (japonica cultivar-group) cDNA clon... 492 e-136
4dbj|AK064866.1| Oryza sativa (japonica cultivar-group) cDNA clon... 492 e-136
5dbj|AK061706.1| Oryza sativa (japonica cultivar-group) cDNA clon... 492 e-136
6gb|AY107471.1| Zea mays PCO115183 mRNA sequence 432 e-118
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
8dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
9emb|Z23023.1|STMALDEHB S.tuberosum mRNA for precursor of the mit... 64 6e-07
10ref|NM_126936.2| Arabidopsis thaliana malic enzyme/ oxidoreducta... 56 2e-04
11gb|BT000996.1| Arabidopsis thaliana clone U19925 putative malate... 56 2e-04
12gb|AY091108.1| Arabidopsis thaliana putative malate oxidoreducta... 56 2e-04
13gb|U01162.1|U01162 Amaranthus hypochondriacus C4 photosynthetic ... 56 2e-04
14emb|Z23002.1|MIST59KD S.tuberosum mitochondrial gene for the 59k... 48 0.037
15gb|AC090647.6| Genomic sequence for Mus musculus, clone RP23-252... 44 0.58
16gb|AC156283.6| Mus musculus 6 BAC RP24-327I4 (Roswell Park Cance... 44 0.58
17gb|AC110536.10| Mus musculus chromosome 1, clone RP24-545N23, co... 42 2.3
18gb|AC121276.9| Mus musculus chromosome 1, clone RP24-249B16, com... 42 2.3
19gb|AC091561.4| Homo sapiens chromosome 8, clone RP11-388G22, com... 42 2.3
20gb|AC090796.13| Homo sapiens chromosome 8, clone RP11-246K15, co... 42 2.3
21gb|AC131206.2| Homo sapiens 12 BAC RP11-157G21 (Roswell Park Can... 42 2.3
22ref|XM_510858.1| PREDICTED: Pan troglodytes similar to membrane ... 40 9.1
23gb|AC146398.4| Pan troglodytes BAC clone RP43-54K1 from 7, compl... 40 9.1
24gb|DQ175989.1| Hordeum vulgare subsp. vulgare clone 65-16A-RB fl... 40 9.1
25gb|AC166903.2| Mus musculus BAC clone RP24-163K10 from chromosom... 40 9.1
26gb|AC073341.10| Homo sapiens BAC clone RP11-549I23 from 7, compl... 40 9.1
27emb|AL589963.7| Human DNA sequence from clone RP11-133I21 on chr... 40 9.1
28emb|AJ851585.1| Gallus gallus mRNA for hypothetical protein, clo... 40 9.1
29emb|AJ313385.1|TCA313385 Theobroma cacao mRNA for aspartic prote... 40 9.1
30gb|BC055504.1| Danio rerio zgc:66133, mRNA (cDNA clone MGC:66133... 40 9.1
31gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F5 map... 40 9.1
32emb|BX649487.7| Zebrafish DNA sequence from clone DKEY-148C4 in ... 40 9.1
33emb|CR389530.1| Gallus gallus finished cDNA, clone ChEST299m24 40 9.1
34gb|BC044470.1| Danio rerio, Similar to chromosome 20 open readin... 40 9.1
35ref|NM_200496.1| Danio rerio zgc:66133 (zgc:66133), mRNA 40 9.1
36gb|AC005394.1|AC005394 Homo sapiens chromosome 19, cosmid F8518,... 40 9.1
37gb|AC133520.4| Mus musculus BAC clone RP23-185G9 from 8, complet... 40 9.1
38gb|AC087899.40| Mus musculus strain C57BL/6J chromosome 19 clone... 40 9.1
39gb|AC169037.4| Mus musculus BAC clone RP23-85E20 from chromosome... 40 9.1
40dbj|AP001999.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 9.1 
>ref|XM_478211.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2117

 Score =  492 bits (248), Expect = e-136
 Identities = 368/408 (90%)
 Strand = Plus / Minus

                                                                        
Query: 259  tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 318
            ||||||||||||||||||||| |||||||||||||||| |||||||||| | || |||||
Sbjct: 2004 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 1945

                                                                        
Query: 319  aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 378
            | ||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||
Sbjct: 1944 actcaactgtttcttcctcactgagtcttgcaagttcacgtgcatccatgtcacgatatc 1885

                                                                        
Query: 379  cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 438
            |||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| ||||
Sbjct: 1884 cctcagctagatcctctgcaacagcttccttcacaactgctgctgccacctccttggtga 1825

                                                                        
Query: 439  tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 498
            | ||||||||||||||| |||||||||| | |||||||| |||||| ||||| |||||||
Sbjct: 1824 tatcacgtattctggagattggagggtatactatcccttcgagaacttcctcttctttca 1765

                                                                        
Query: 499  tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 558
            | |||||||||||||| || ||||| |||||||||||||| || |||| || |||||| |
Sbjct: 1764 tatacgaagccaagcgttcagctgcagcctgaagcattccgtctgagataacccgtgctc 1705

                                                                        
Query: 559  cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 618
            ||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1704 cagatagaagggttccaagccctattccaggaaagagatacatgttattcccttgatttg 1645

                                                            
Query: 619  agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttc 666
            ||||||| |||||||||| |||||||||||||||   |||||||||||
Sbjct: 1644 agtggccaatctttccattaccaagatccacatcactaaatgggcttc 1597
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>ref|XM_506350.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1457_D07.117 mRNA
          Length = 3192

 Score =  492 bits (248), Expect = e-136
 Identities = 368/408 (90%)
 Strand = Plus / Minus

                                                                        
Query: 259  tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 318
            ||||||||||||||||||||| |||||||||||||||| |||||||||| | || |||||
Sbjct: 2100 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 2041

                                                                        
Query: 319  aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 378
            | ||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||
Sbjct: 2040 actcaactgtttcttcctcactgagtcttgcaagttcacgtgcatccatgtcacgatatc 1981

                                                                        
Query: 379  cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 438
            |||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| ||||
Sbjct: 1980 cctcagctagatcctctgcaacagcttccttcacaactgctgctgccacctccttggtga 1921

                                                                        
Query: 439  tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 498
            | ||||||||||||||| |||||||||| | |||||||| |||||| ||||| |||||||
Sbjct: 1920 tatcacgtattctggagattggagggtatactatcccttcgagaacttcctcttctttca 1861

                                                                        
Query: 499  tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 558
            | |||||||||||||| || ||||| |||||||||||||| || |||| || |||||| |
Sbjct: 1860 tatacgaagccaagcgttcagctgcagcctgaagcattccgtctgagataacccgtgctc 1801

                                                                        
Query: 559  cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 618
            ||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1800 cagatagaagggttccaagccctattccaggaaagagatacatgttattcccttgatttg 1741

                                                            
Query: 619  agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttc 666
            ||||||| |||||||||| |||||||||||||||   |||||||||||
Sbjct: 1740 agtggccaatctttccattaccaagatccacatcactaaatgggcttc 1693
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>dbj|AK065801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036E18, full
            insert sequence
          Length = 3192

 Score =  492 bits (248), Expect = e-136
 Identities = 368/408 (90%)
 Strand = Plus / Minus

                                                                        
Query: 259  tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 318
            ||||||||||||||||||||| |||||||||||||||| |||||||||| | || |||||
Sbjct: 2100 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 2041

                                                                        
Query: 319  aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 378
            | ||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||
Sbjct: 2040 actcaactgtttcttcctcactgagtcttgcaagttcacgtgcatccatgtcacgatatc 1981

                                                                        
Query: 379  cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 438
            |||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| ||||
Sbjct: 1980 cctcagctagatcctctgcaacagcttccttcacaactgctgctgccacctccttggtga 1921

                                                                        
Query: 439  tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 498
            | ||||||||||||||| |||||||||| | |||||||| |||||| ||||| |||||||
Sbjct: 1920 tatcacgtattctggagattggagggtatactatcccttcgagaacttcctcttctttca 1861

                                                                        
Query: 499  tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 558
            | |||||||||||||| || ||||| |||||||||||||| || |||| || |||||| |
Sbjct: 1860 tatacgaagccaagcgttcagctgcagcctgaagcattccgtctgagataacccgtgctc 1801

                                                                        
Query: 559  cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 618
            ||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1800 cagatagaagggttccaagccctattccaggaaagagatacatgttattcccttgatttg 1741

                                                            
Query: 619  agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttc 666
            ||||||| |||||||||| |||||||||||||||   |||||||||||
Sbjct: 1740 agtggccaatctttccattaccaagatccacatcactaaatgggcttc 1693
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>dbj|AK064866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I18, full
            insert sequence
          Length = 2117

 Score =  492 bits (248), Expect = e-136
 Identities = 368/408 (90%)
 Strand = Plus / Minus

                                                                        
Query: 259  tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 318
            ||||||||||||||||||||| |||||||||||||||| |||||||||| | || |||||
Sbjct: 2004 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 1945

                                                                        
Query: 319  aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 378
            | ||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||
Sbjct: 1944 actcaactgtttcttcctcactgagtcttgcaagttcacgtgcatccatgtcacgatatc 1885

                                                                        
Query: 379  cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 438
            |||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| ||||
Sbjct: 1884 cctcagctagatcctctgcaacagcttccttcacaactgctgctgccacctccttggtga 1825

                                                                        
Query: 439  tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 498
            | ||||||||||||||| |||||||||| | |||||||| |||||| ||||| |||||||
Sbjct: 1824 tatcacgtattctggagattggagggtatactatcccttcgagaacttcctcttctttca 1765

                                                                        
Query: 499  tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 558
            | |||||||||||||| || ||||| |||||||||||||| || |||| || |||||| |
Sbjct: 1764 tatacgaagccaagcgttcagctgcagcctgaagcattccgtctgagataacccgtgctc 1705

                                                                        
Query: 559  cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 618
            ||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1704 cagatagaagggttccaagccctattccaggaaagagatacatgttattcccttgatttg 1645

                                                            
Query: 619  agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttc 666
            ||||||| |||||||||| |||||||||||||||   |||||||||||
Sbjct: 1644 agtggccaatctttccattaccaagatccacatcactaaatgggcttc 1597
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>dbj|AK061706.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-E11, full
            insert sequence
          Length = 1760

 Score =  492 bits (248), Expect = e-136
 Identities = 368/408 (90%)
 Strand = Plus / Minus

                                                                        
Query: 259  tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 318
            ||||||||||||||||||||| |||||||||||||||| |||||||||| | || |||||
Sbjct: 1401 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 1342

                                                                        
Query: 319  aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 378
            | ||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||
Sbjct: 1341 actcaactgtttcttcctcactgagtcttgcaagttcacgtgcatccatgtcacgatatc 1282

                                                                        
Query: 379  cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 438
            |||||||||| |||||||||||||||||| |||| |||||||| ||||||||||| ||||
Sbjct: 1281 cctcagctagatcctctgcaacagcttccttcacaactgctgctgccacctccttggtga 1222

                                                                        
Query: 439  tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 498
            | ||||||||||||||| |||||||||| | |||||||| |||||| ||||| |||||||
Sbjct: 1221 tatcacgtattctggagattggagggtatactatcccttcgagaacttcctcttctttca 1162

                                                                        
Query: 499  tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 558
            | |||||||||||||| || ||||| |||||||||||||| || |||| || |||||| |
Sbjct: 1161 tatacgaagccaagcgttcagctgcagcctgaagcattccgtctgagataacccgtgctc 1102

                                                                        
Query: 559  cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 618
            ||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1101 cagatagaagggttccaagccctattccaggaaagagatacatgttattcccttgatttg 1042

                                                            
Query: 619  agtggccgatctttccatcaccaagatccacatcgtcaaatgggcttc 666
            ||||||| |||||||||| |||||||||||||||   |||||||||||
Sbjct: 1041 agtggccaatctttccattaccaagatccacatcactaaatgggcttc 994
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>gb|AY107471.1| Zea mays PCO115183 mRNA sequence
          Length = 1366

 Score =  432 bits (218), Expect = e-118
 Identities = 359/406 (88%)
 Strand = Plus / Minus

                                                                        
Query: 259  tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 318
            ||||||| |||||||| | || ||||||||| || ||| ||||||||||  |||||||||
Sbjct: 1009 tctagtccttcttgtatattattgttggatagacaggactccacatgttcgtcttgacat 950

                                                                        
Query: 319  aatcaactgtttcttcctcgcttagtcttgcaagctcacgtgcatccatgtcacggtatc 378
            | |||   ||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct: 949  attcattagtttcttcctcactgagtcgtgcaagctcacgtgcatccatgtcacggtatc 890

                                                                        
Query: 379  cctcagctaggtcctctgcaacagcttccctcaccactgctgccgccacctccttagtga 438
            |||||||||| |||||||| || || |||||||| |||||||| ||||||||||||||||
Sbjct: 889  cctcagctagatcctctgctactgcctccctcacaactgctgctgccacctccttagtga 830

                                                                        
Query: 439  tgtcacgtattctggaggttggagggtaaattatcccttggagaacctcctcctctttca 498
            ||||||||||||||||  ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 829  tgtcacgtattctggaaattggaggataaattatcccttcgagaacctcctcctctttca 770

                                                                        
Query: 499  tgtacgaagccaagcgctctgctgccgcctgaagcattccatcagagacaatccgtgcac 558
            |||| |||||||| || || ||||| ||||| |||||||||||||||| || ||| ||||
Sbjct: 769  tgtatgaagccaaacgttcagctgcagcctgcagcattccatcagagataacccgagcac 710

                                                                        
Query: 559  cagataacagggttccaagtcctattccaggaaagagatacatgttattcccttgattag 618
            |||| |  ||||||||||| ||||||||||||||||| |||||||| ||||||||||| |
Sbjct: 709  cagacagaagggttccaagccctattccaggaaagaggtacatgttgttcccttgattgg 650

                                                          
Query: 619  agtggccgatctttccatcaccaagatccacatcgtcaaatgggct 664
            | ||||| ||||| |||||||||||||||||||| | |||||||||
Sbjct: 649  aatggccaatcttcccatcaccaagatccacatcatgaaatgggct 604
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  155 bits (78), Expect = 2e-34
 Identities = 102/110 (92%)
 Strand = Plus / Minus

                                                                            
Query: 342      agtcttgcaagctcacgtgcatccatgtcacggtatccctcagctaggtcctctgcaaca 401
                ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 18541284 agtcttgcaagttcacgtgcatccatgtcacgatatccctcagctagatcctctgcaaca 18541225

                                                                  
Query: 402      gcttccctcaccactgctgccgccacctccttagtgatgtcacgtattct 451
                |||||| |||| |||||||| ||||||||||| ||||| |||||||||||
Sbjct: 18541224 gcttccttcacaactgctgctgccacctccttggtgatatcacgtattct 18541175



 Score =  107 bits (54), Expect = 5e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                            
Query: 259      tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 318
                ||||||||||||||||||||| |||||||||||||||| |||||||||| | || |||||
Sbjct: 18541452 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 18541393

                                  
Query: 319      aatcaactgtttcttcct 336
                | ||||||||||||||||
Sbjct: 18541392 actcaactgtttcttcct 18541375



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                    
Query: 585      ccaggaaagagatacatgttattcccttgattagagtggccgatctttccat 636
                |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 18540764 ccaggaaagagatacatgttattcccttgatttgagtggccaatctttccat 18540713



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                            
Query: 450      ctggaggttggagggtaaattatcccttggagaacctcctcctctttcatgtacgaagcc 509
                |||||| |||||||||| | |||||||| |||||| ||||| |||||||| |||||||||
Sbjct: 18541101 ctggagattggagggtatactatcccttcgagaacttcctcttctttcatatacgaagcc 18541042

                    
Query: 510      aagc 513
                ||||
Sbjct: 18541041 aagc 18541038



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                            
Query: 519      gctgccgcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagt 578
                ||||| |||||||||||||| || |||| || |||||| |||||||  ||||||||||| 
Sbjct: 18540934 gctgcagcctgaagcattccgtctgagataacccgtgctccagatagaagggttccaagc 18540875

                       
Query: 579      cctattc 585
                |||||||
Sbjct: 18540874 cctattc 18540868
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>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1457_D07
          Length = 103688

 Score =  155 bits (78), Expect = 2e-34
 Identities = 102/110 (92%)
 Strand = Plus / Minus

                                                                         
Query: 342   agtcttgcaagctcacgtgcatccatgtcacggtatccctcagctaggtcctctgcaaca 401
             ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 70040 agtcttgcaagttcacgtgcatccatgtcacgatatccctcagctagatcctctgcaaca 69981

                                                               
Query: 402   gcttccctcaccactgctgccgccacctccttagtgatgtcacgtattct 451
             |||||| |||| |||||||| ||||||||||| ||||| |||||||||||
Sbjct: 69980 gcttccttcacaactgctgctgccacctccttggtgatatcacgtattct 69931



 Score =  107 bits (54), Expect = 5e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                         
Query: 259   tctagtctttcttgtacactactgttggataaactggattccacatgttgttcttgacat 318
             ||||||||||||||||||||| |||||||||||||||| |||||||||| | || |||||
Sbjct: 70208 tctagtctttcttgtacactattgttggataaactggactccacatgttctgctggacat 70149

                               
Query: 319   aatcaactgtttcttcct 336
             | ||||||||||||||||
Sbjct: 70148 actcaactgtttcttcct 70131



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                 
Query: 585   ccaggaaagagatacatgttattcccttgattagagtggccgatctttccat 636
             |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 69520 ccaggaaagagatacatgttattcccttgatttgagtggccaatctttccat 69469



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                         
Query: 450   ctggaggttggagggtaaattatcccttggagaacctcctcctctttcatgtacgaagcc 509
             |||||| |||||||||| | |||||||| |||||| ||||| |||||||| |||||||||
Sbjct: 69857 ctggagattggagggtatactatcccttcgagaacttcctcttctttcatatacgaagcc 69798

                 
Query: 510   aagc 513
             ||||
Sbjct: 69797 aagc 69794



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                         
Query: 519   gctgccgcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagt 578
             ||||| |||||||||||||| || |||| || |||||| |||||||  ||||||||||| 
Sbjct: 69690 gctgcagcctgaagcattccgtctgagataacccgtgctccagatagaagggttccaagc 69631

                    
Query: 579   cctattc 585
             |||||||
Sbjct: 69630 cctattc 69624
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>emb|Z23023.1|STMALDEHB S.tuberosum mRNA for precursor of the mitochondrial NAD+-dependent
            malic enzyme (malate dehydrogenase)
          Length = 2251

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 107/132 (81%)
 Strand = Plus / Minus

                                                                        
Query: 363  tccatgtcacggtatccctcagctaggtcctctgcaacagcttccctcaccactgctgcc 422
            ||||| ||||||||||| ||||| || |||||| | | ||||||  ||||||| ||||| 
Sbjct: 1806 tccatttcacggtatccttcagccagatcctcttctatagcttctttcaccacagctgca 1747

                                                                        
Query: 423  gccacctccttagtgatgtcacgtattctggaggttggagggtaaattatcccttggaga 482
            ||||||||||| || || || ||||| |||||  | | |||||| || ||||| | ||| 
Sbjct: 1746 gccacctcctttgttatatcgcgtatcctggatatcgaagggtatataatccccttgagt 1687

                        
Query: 483  acctcctcctct 494
            ||||||||||||
Sbjct: 1686 acctcctcctct 1675



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 264  tctttcttgtacactactgttggataaactggattccacatgttgttct 312
            ||||||||||| || | |||||||||| | ||| ||||||| |||||||
Sbjct: 1905 tctttcttgtaaaccagtgttggataatcaggactccacatattgttct 1857
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>ref|NM_126936.2| Arabidopsis thaliana malic enzyme/ oxidoreductase, acting on NADH or
            NADPH, NAD or NADP as acceptor AT2G13560 mRNA, complete
            cds
          Length = 2113

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 525  gcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagtcctatt 584
            ||||||||||| || || ||||||||  | ||||||||||| || || |||||||| || 
Sbjct: 1732 gcctgaagcatcccgtcggagacaatgggagcaccagataaaagagtgccaagtccaata 1673

                                
Query: 585  ccaggaaagagatacatgtt 604
            || ||||| |||||||||||
Sbjct: 1672 cctggaaatagatacatgtt 1653
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>gb|BT000996.1| Arabidopsis thaliana clone U19925 putative malate oxidoreductase
            (malic enzyme) (At2g13560) mRNA, complete cds
          Length = 1902

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 525  gcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagtcctatt 584
            ||||||||||| || || ||||||||  | ||||||||||| || || |||||||| || 
Sbjct: 1607 gcctgaagcatcccgtcggagacaatgggagcaccagataaaagagtgccaagtccaata 1548

                                
Query: 585  ccaggaaagagatacatgtt 604
            || ||||| |||||||||||
Sbjct: 1547 cctggaaatagatacatgtt 1528
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>gb|AY091108.1| Arabidopsis thaliana putative malate oxidoreductase (malic enzyme)
            (At2g13560) mRNA, complete cds
          Length = 2181

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 525  gcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagtcctatt 584
            ||||||||||| || || ||||||||  | ||||||||||| || || |||||||| || 
Sbjct: 1733 gcctgaagcatcccgtcggagacaatgggagcaccagataaaagagtgccaagtccaata 1674

                                
Query: 585  ccaggaaagagatacatgtt 604
            || ||||| |||||||||||
Sbjct: 1673 cctggaaatagatacatgtt 1654
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>gb|U01162.1|U01162 Amaranthus hypochondriacus C4 photosynthetic NAD-dependent malic
            enzyme subunit alpha precursor mRNA, complete cds
          Length = 2283

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                        
Query: 360  gcatccatgtcacggtatccctcagctaggtcctctgcaacagcttccctcaccactgct 419
            |||||||||||||| || || || || ||||||||| | ||||||||| | |  || |||
Sbjct: 1826 gcatccatgtcacgatagccttctgcaaggtcctcttctacagcttccttaattacggct 1767

                                            
Query: 420  gccgccacctccttagtgatgtcacgtattct 451
            || || ||||| || |||||||||||||||||
Sbjct: 1766 gctgctacctctttggtgatgtcacgtattct 1735



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                        
Query: 585  ccaggaaagagatacatgttattcccttgattagagtggccgatctttccatcaccaaga 644
            |||||||| || |||||||| || || ||||||  ||| || ||||| ||||  ||||||
Sbjct: 1601 ccaggaaaaaggtacatgttgtttccctgattaacgtgcccaatcttgccatttccaaga 1542

                    
Query: 645  tccacatc 652
            ||||||||
Sbjct: 1541 tccacatc 1534
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>emb|Z23002.1|MIST59KD S.tuberosum mitochondrial gene for the 59kDa subunit of the
            NAD+-dependent malic enzyme
          Length = 2188

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 585  ccaggaaagagatacatgttattcccttgatt 616
            ||||| |||||||||||||||||| |||||||
Sbjct: 1551 ccagggaagagatacatgttattcgcttgatt 1520
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>gb|AC090647.6| Genomic sequence for Mus musculus, clone RP23-252I12, complete
            sequence
          Length = 139891

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 194  gaaagaatagcctaaggaaaat 215
            ||||||||||||||||||||||
Sbjct: 6350 gaaagaatagcctaaggaaaat 6371
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>gb|AC156283.6| Mus musculus 6 BAC RP24-327I4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 172188

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 194    gaaagaatagcctaaggaaaat 215
              ||||||||||||||||||||||
Sbjct: 155706 gaaagaatagcctaaggaaaat 155727
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>gb|AC110536.10| Mus musculus chromosome 1, clone RP24-545N23, complete sequence
          Length = 190817

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 219 gcatgatgaatgaacatgtatttta 243
           |||||||||| ||||||||||||||
Sbjct: 43  gcatgatgaaagaacatgtatttta 19
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>gb|AC121276.9| Mus musculus chromosome 1, clone RP24-249B16, complete sequence
          Length = 212083

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 219   gcatgatgaatgaacatgtatttta 243
             |||||||||| ||||||||||||||
Sbjct: 60572 gcatgatgaaagaacatgtatttta 60596
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>gb|AC091561.4| Homo sapiens chromosome 8, clone RP11-388G22, complete sequence
          Length = 191037

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 328    tttcttcctcgcttagtcttgcaag 352
              ||||||||| |||||||||||||||
Sbjct: 156515 tttcttcctggcttagtcttgcaag 156539
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>gb|AC090796.13| Homo sapiens chromosome 8, clone RP11-246K15, complete sequence
          Length = 168055

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 328   tttcttcctcgcttagtcttgcaag 352
             ||||||||| |||||||||||||||
Sbjct: 76456 tttcttcctggcttagtcttgcaag 76480
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>gb|AC131206.2| Homo sapiens 12 BAC RP11-157G21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177260

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 328   tttcttcctcgcttagtcttg 348
             |||||||||||||||||||||
Sbjct: 91381 tttcttcctcgcttagtcttg 91401
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>ref|XM_510858.1| PREDICTED: Pan troglodytes similar to membrane interacting protein of
            RGS16 (LOC453968), mRNA
          Length = 1902

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 392  ctctgcaacagcttccctca 411
            ||||||||||||||||||||
Sbjct: 1395 ctctgcaacagcttccctca 1376
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>gb|AC146398.4| Pan troglodytes BAC clone RP43-54K1 from 7, complete sequence
          Length = 185645

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 632    tccatcaccaagatccacat 651
              ||||||||||||||||||||
Sbjct: 164483 tccatcaccaagatccacat 164502
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>gb|DQ175989.1| Hordeum vulgare subsp. vulgare clone 65-16A-RB flanking T-DNA
           insertion sequence
          Length = 519

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 480 agaacctcctcctctttcat 499
           ||||||||||||||||||||
Sbjct: 479 agaacctcctcctctttcat 498
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>gb|AC166903.2| Mus musculus BAC clone RP24-163K10 from chromosome 16, complete sequence
          Length = 184060

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 32     gacagacagggagctgggagccta 55
              ||||||| ||||||||||||||||
Sbjct: 143661 gacagactgggagctgggagccta 143684
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>gb|AC073341.10| Homo sapiens BAC clone RP11-549I23 from 7, complete sequence
          Length = 185574

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 632    tccatcaccaagatccacat 651
              ||||||||||||||||||||
Sbjct: 133064 tccatcaccaagatccacat 133045
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>emb|AL589963.7| Human DNA sequence from clone RP11-133I21 on chromosome 6 Contains part
             of the gene for a novel protein containing CH domains
             (contains KIAA1756, FLJ30878 and the likely ortholog of
             rat CPG2) and part of a novel gene, complete sequence
          Length = 86565

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 229   tgaacatgtattttacagcatgag 252
             ||||||||||||| ||||||||||
Sbjct: 51127 tgaacatgtatttcacagcatgag 51104
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>emb|AJ851585.1| Gallus gallus mRNA for hypothetical protein, clone 8p1
          Length = 5356

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 199  aatagcctaaggaaaattgc 218
            ||||||||||||||||||||
Sbjct: 1209 aatagcctaaggaaaattgc 1190
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>emb|AJ313385.1|TCA313385 Theobroma cacao mRNA for aspartic proteinase (ap2 gene)
          Length = 1828

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   gacaactaaaaactggggtc 109
            ||||||||||||||||||||
Sbjct: 1641 gacaactaaaaactggggtc 1622
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>gb|BC055504.1| Danio rerio zgc:66133, mRNA (cDNA clone MGC:66133 IMAGE:2644758),
            complete cds
          Length = 1703

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  tgaatgaacatgtattttac 244
            ||||||||||||||||||||
Sbjct: 1452 tgaatgaacatgtattttac 1471
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>gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F5 map PR1, complete
             sequence
          Length = 102585

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 525   gcctgaagcattccatcagagacaatccgtgcaccagataacagggttccaagtcc 580
             ||||||||||| || || ||||||||  | ||||||||||| || || ||||||||
Sbjct: 44565 gcctgaagcatcccgtcggagacaatgggagcaccagataaaagagtgccaagtcc 44510
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>emb|BX649487.7| Zebrafish DNA sequence from clone DKEY-148C4 in linkage group 9,
             complete sequence
          Length = 201933

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   atgaatgaacatgtatttta 243
             ||||||||||||||||||||
Sbjct: 38042 atgaatgaacatgtatttta 38061
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>emb|CR389530.1| Gallus gallus finished cDNA, clone ChEST299m24
          Length = 860

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 199 aatagcctaaggaaaattgc 218
           ||||||||||||||||||||
Sbjct: 464 aatagcctaaggaaaattgc 445
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>gb|BC044470.1| Danio rerio, Similar to chromosome 20 open reading frame 102, clone
            IMAGE:3816405, mRNA
          Length = 1709

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  tgaatgaacatgtattttac 244
            ||||||||||||||||||||
Sbjct: 1462 tgaatgaacatgtattttac 1481
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>ref|NM_200496.1| Danio rerio zgc:66133 (zgc:66133), mRNA
          Length = 1703

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  tgaatgaacatgtattttac 244
            ||||||||||||||||||||
Sbjct: 1452 tgaatgaacatgtattttac 1471
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>gb|AC005394.1|AC005394 Homo sapiens chromosome 19, cosmid F8518, complete sequence
          Length = 44935

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 584  tccaggaaagagatacatgt 603
            ||||||||||||||||||||
Sbjct: 5986 tccaggaaagagatacatgt 6005
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>gb|AC133520.4| Mus musculus BAC clone RP23-185G9 from 8, complete sequence
          Length = 201054

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   tcaccactgctgccgccacc 428
             ||||||||||||||||||||
Sbjct: 70703 tcaccactgctgccgccacc 70722
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>gb|AC087899.40| Mus musculus strain C57BL/6J chromosome 19 clone rp23-170m6, complete
             sequence
          Length = 194291

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 32    gacagacagggagctgggagccta 55
             ||||||| ||||||||||||||||
Sbjct: 32553 gacagactgggagctgggagccta 32576
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>gb|AC169037.4| Mus musculus BAC clone RP23-85E20 from chromosome 16, complete sequence
          Length = 184591

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 32     gacagacagggagctgggagccta 55
              ||||||| ||||||||||||||||
Sbjct: 166789 gacagactgggagctgggagccta 166766
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>dbj|AP001999.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-469N6, complete
             sequence
          Length = 172504

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 379   cctcagctaggtcctctgca 398
             ||||||||||||||||||||
Sbjct: 18010 cctcagctaggtcctctgca 18029


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,635,539
Number of Sequences: 3902068
Number of extensions: 5635539
Number of successful extensions: 98987
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98890
Number of HSP's gapped (non-prelim): 97
length of query: 666
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 643
effective length of database: 17,143,297,704
effective search space: 11023140423672
effective search space used: 11023140423672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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