>SRP72_SCHMA (P49965) Signal recognition particle 72 kDa protein (SRP72)|
          Length = 707

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = -1

Query: 337 RWLPKRERSTYRPKRKDKR-AQVRGAQGAVSRE 242
           RWLP+RER+ YR KR+DKR A  RG QG ++ E
Sbjct: 632 RWLPRRERTHYRGKRRDKRFAPTRGPQGQITGE 664

>SRP72_CAEEL (P91240) Signal recognition particle 72 kDa protein homolog (SRP72)|
          Length = 694

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
 Frame = -1

Query: 577 ARTDLAKAEQYEKQLKPLPGLQGIDVKSLEKTSGA------RHVEQAMKVDTPEEVXXXX 416
           ++TD  KAE    +L P      ++V  LE +         R  ++A    T E      
Sbjct: 533 SKTDPKKAESLSAKLFPETMEVDVNVDELEDSDWILYGEKYRQKKEAKSPQTAEIAATRK 592

Query: 415 XXXXXXXXXXXXXXXXXXXXXXXXPERWLPKRERSTYRPKRKDKRAQV-RGAQGAVS 248
                                   PERWLP++ERSTY+ KRK++  ++ RG QG+ S
Sbjct: 593 LKIATKRKRKIRLPKNYNSAVTPDPERWLPRQERSTYKRKRKNREREIGRGTQGSSS 649

>SRP72_YEAST (P38688) Signal recognition particle 72 kDa protein homolog (SRP72)|
          Length = 640

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = -1

Query: 340 ERWLPKRERSTYRPKRKDKRAQVRGAQGAVSREKHD 233
           ERWLP R+RSTYRPK+K + A  +  QG    +K +
Sbjct: 582 ERWLPLRDRSTYRPKKKQQGA--KQTQGGAMNKKSE 615

>SRP72_HUMAN (O76094) Signal recognition particle 72 kDa protein (SRP72)|
          Length = 670

 Score = 35.8 bits (81), Expect = 0.090
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -1

Query: 340 ERWLPKRERSTYRPKRKDKRAQV--RGAQGAVS 248
           ERWLP RERS YR ++K K+     +G QGA +
Sbjct: 574 ERWLPMRERSYYRGRKKGKKKDQIGKGTQGATA 606

>SRP72_CANFA (P33731) Signal recognition particle 72 kDa protein (SRP72)|
          Length = 670

 Score = 35.8 bits (81), Expect = 0.090
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -1

Query: 340 ERWLPKRERSTYRPKRKDKRAQV--RGAQGAVS 248
           ERWLP RERS YR ++K K+     +G QGA +
Sbjct: 574 ERWLPMRERSYYRGRKKGKKKDQIGKGTQGATA 606


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,887,862
Number of Sequences: 219361
Number of extensions: 633901
Number of successful extensions: 1819
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1819
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)