| Clone Name | rbags22k12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY109884.1| Zea mays CL1583_1 mRNA sequence Length = 1735 Score = 389 bits (196), Expect = e-105 Identities = 281/308 (91%), Gaps = 1/308 (0%) Strand = Plus / Minus Query: 365 ctgtggaacagccaatctctcaaggttggcagcatagggcatgggtacatcagctccagc 424 |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1312 ctgtggaacagccattctctcaaggttggcagcatagggcataggtacatcagctccagc 1253 Query: 425 aatcctctcaattggagcatcaagatactcaaagctttcttctacaacagacatgcatat 484 |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1252 gatcctctcaactggggcatcaaggtactcaaagctttcttctacaacagacatgcatat 1193 Query: 485 ctcagcaccaacaccatgctgggggaagccttcttcaagagtcaccaatctatttgtttt 544 ||| ||||||| ||||| || ||||| |||||||||| ||||||||||| || ||||| Sbjct: 1192 ctcggcaccaatcccatgttgagggaacccttcttcaacagtcaccaatcggttggtttt 1133 Query: 545 cctaacagatgcatttatggcggctctatccagtggcctaattgatcggaggttgatcac 604 ||||||||||||||| || || |||||||| ||||| || || ||||| ||||||||||| Sbjct: 1132 cctaacagatgcattaatagcagctctatcaagtggtctgatcgatcgaaggttgatcac 1073 Query: 605 ctcagcactgattccttccttgggacagtatctcagcagcctgaagagcatagccaacca 664 ||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| Sbjct: 1072 ctcagcactgattccttcctt-ggacagtatctctgcagcctggagagcatagccaacca 1014 Query: 665 tcttggag 672 |||||||| Sbjct: 1013 tcttggag 1006
>gb|AF069910.1|AF069910 Zea mays pyruvate dehydrogenase E1 beta subunit isoform 3 mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1655 Score = 389 bits (196), Expect = e-105 Identities = 281/308 (91%), Gaps = 1/308 (0%) Strand = Plus / Minus Query: 365 ctgtggaacagccaatctctcaaggttggcagcatagggcatgggtacatcagctccagc 424 |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1288 ctgtggaacagccattctctcaaggttggcagcatagggcataggtacatcagctccagc 1229 Query: 425 aatcctctcaattggagcatcaagatactcaaagctttcttctacaacagacatgcatat 484 |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1228 gatcctctcaactggggcatcaaggtactcaaagctttcttctacaacagacatgcatat 1169 Query: 485 ctcagcaccaacaccatgctgggggaagccttcttcaagagtcaccaatctatttgtttt 544 ||| ||||||| ||||| || ||||| |||||||||| ||||||||||| || ||||| Sbjct: 1168 ctcggcaccaatcccatgttgagggaacccttcttcaacagtcaccaatcggttggtttt 1109 Query: 545 cctaacagatgcatttatggcggctctatccagtggcctaattgatcggaggttgatcac 604 ||||||||||||||| || || |||||||| ||||| || || ||||| ||||||||||| Sbjct: 1108 cctaacagatgcattaatagcagctctatcaagtggtctgatcgatcgaaggttgatcac 1049 Query: 605 ctcagcactgattccttccttgggacagtatctcagcagcctgaagagcatagccaacca 664 ||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| Sbjct: 1048 ctcagcactgattccttcctt-ggacagtatctctgcagcctggagagcatagccaacca 990 Query: 665 tcttggag 672 |||||||| Sbjct: 989 tcttggag 982
>gb|AF069909.1|AF069909 Zea mays pyruvate dehydrogenase E1 beta subunit isoform 2 mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1679 Score = 383 bits (193), Expect = e-103 Identities = 311/349 (89%), Gaps = 1/349 (0%) Strand = Plus / Minus Query: 324 ctgtagcaggctcgcctggccgctcggacgatatcctcaatctgtggaacagccaatctc 383 ||||||||||| ||| | ||||| || || || || || | ||| |||||||||| |||| Sbjct: 1354 ctgtagcaggcccgctttgccgcccgcacaatgtcatcgacctgcggaacagccattctc 1295 Query: 384 tcaaggttggcagcatagggcatgggtacatcagctccagcaatcctctcaattggagca 443 ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| Sbjct: 1294 tcaaggttggcagcatagggcataggtacatcagctccagcaatcctctcaactggtgca 1235 Query: 444 tcaagatactcaaagctttcttctacaacagacatgcatatctcagcaccaacaccatgc 503 ||||| ||| | |||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct: 1234 tcaaggtacgcgaagctttcttctacaacagacatgcatatctcggcaccaatcccatgt 1175 Query: 504 tgggggaagccttcttcaagagtcaccaatctatttgttttcctaacagatgcatttatg 563 |||||||| |||||||||| ||||||||||| || |||||||| ||||||||||| || Sbjct: 1174 tgggggaacccttcttcaacagtcaccaatcggttggttttcctgacagatgcattaata 1115 Query: 564 gcggctctatccagtggcctaattgatcggaggttgatcacctcagcactgattccttcc 623 || |||||||| ||||| || |||||||| |||||||||||||||||||||||||||||| Sbjct: 1114 gcagctctatcaagtggtctgattgatcgaaggttgatcacctcagcactgattccttcc 1055 Query: 624 ttgggacagtatctcagcagcctgaagagcatagccaaccatcttggag 672 || |||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 1054 tt-ggacagtatctctgcagcctggagagcatagccaaccatcttggag 1007
>dbj|AK061863.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-H03, full insert sequence Length = 1598 Score = 377 bits (190), Expect = e-101 Identities = 332/378 (87%), Gaps = 1/378 (0%) Strand = Plus / Minus Query: 295 atcacgcagttgccgccatgggcaacgctctgtagcaggctcgcctggccgctcggacga 354 |||| |||||||| |||||||||| |||||||||||| || ||| | || || ||||| | Sbjct: 1307 atcaggcagttgctgccatgggcaccgctctgtagcacgcacgcttcgctgcacggacaa 1248 Query: 355 tatcctcaatctgtggaacagccaatctctcaaggttggcagcatagggcatgggtacat 414 |||| |||| |||||| ||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 1247 tatcgtcaacctgtgggacagccatcctctcaagattggcagcatagggcatgggtacat 1188 Query: 415 cagctccagcaatcctctcaattggagcatcaagatactcaaagctttcttctacaacag 474 ||||||||||||| ||||||| ||| ||||||||||| ||||||||||| || ||||||| Sbjct: 1187 cagctccagcaattctctcaactggtgcatcaagatattcaaagctttcctcaacaacag 1128 Query: 475 acatgcatatctcagcaccaacaccatgctgggggaagccttcttcaagagtcaccaatc 534 ||||||||||||||||||||| |||||||| ||||||| ||| |||| |||||||||| Sbjct: 1127 acatgcatatctcagcaccaatcccatgctgtgggaagctttcctcaatggtcaccaatc 1068 Query: 535 tatttgttttcctaacagatgcatttatggcggctctatccagtggcctaattgatcgga 594 |||||||||| |||||||||||||| || | |||||||| ||||| |||||||| || | Sbjct: 1067 tatttgtttttctaacagatgcattgatagtagctctatcaagtggtctaattgaacgaa 1008 Query: 595 ggttgatcacctcagcactgattccttccttgggacagtatctcagcagcctgaagagca 654 |||| |||||||||||||||||||||| ||| ||||| ||| || || |||||||||||| Sbjct: 1007 ggtttatcacctcagcactgattcctt-ctttggacaatatatctgcggcctgaagagca 949 Query: 655 tagccaaccatcttggag 672 || ||||||||||||||| Sbjct: 948 tatccaaccatcttggag 931 Score = 44.1 bits (22), Expect = 0.59 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 192 ctcgcttcgagtttgggcaattg-tggataccattatg 228 ||||||| ||||||||||||||| |||| ||||||||| Sbjct: 1399 ctcgctttgagtttgggcaattgttggacaccattatg 1362
>dbj|AK069525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022P15, full insert sequence Length = 1608 Score = 377 bits (190), Expect = e-101 Identities = 332/378 (87%), Gaps = 1/378 (0%) Strand = Plus / Minus Query: 295 atcacgcagttgccgccatgggcaacgctctgtagcaggctcgcctggccgctcggacga 354 |||| |||||||| |||||||||| |||||||||||| || ||| | || || ||||| | Sbjct: 1319 atcaggcagttgctgccatgggcaccgctctgtagcacgcacgcttcgctgcacggacaa 1260 Query: 355 tatcctcaatctgtggaacagccaatctctcaaggttggcagcatagggcatgggtacat 414 |||| |||| |||||| ||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 1259 tatcgtcaacctgtgggacagccatcctctcaagattggcagcatagggcatgggtacat 1200 Query: 415 cagctccagcaatcctctcaattggagcatcaagatactcaaagctttcttctacaacag 474 ||||||||||||| ||||||| ||| ||||||||||| ||||||||||| || ||||||| Sbjct: 1199 cagctccagcaattctctcaactggtgcatcaagatattcaaagctttcctcaacaacag 1140 Query: 475 acatgcatatctcagcaccaacaccatgctgggggaagccttcttcaagagtcaccaatc 534 ||||||||||||||||||||| |||||||| ||||||| ||| |||| |||||||||| Sbjct: 1139 acatgcatatctcagcaccaatcccatgctgtgggaagctttcctcaatggtcaccaatc 1080 Query: 535 tatttgttttcctaacagatgcatttatggcggctctatccagtggcctaattgatcgga 594 |||||||||| |||||||||||||| || | |||||||| ||||| |||||||| || | Sbjct: 1079 tatttgtttttctaacagatgcattgatagtagctctatcaagtggtctaattgaacgaa 1020 Query: 595 ggttgatcacctcagcactgattccttccttgggacagtatctcagcagcctgaagagca 654 |||| |||||||||||||||||||||| ||| ||||| ||| || || |||||||||||| Sbjct: 1019 ggtttatcacctcagcactgattcctt-ctttggacaatatatctgcggcctgaagagca 961 Query: 655 tagccaaccatcttggag 672 || ||||||||||||||| Sbjct: 960 tatccaaccatcttggag 943 Score = 44.1 bits (22), Expect = 0.59 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 192 ctcgcttcgagtttgggcaattg-tggataccattatg 228 ||||||| ||||||||||||||| |||| ||||||||| Sbjct: 1411 ctcgctttgagtttgggcaattgttggacaccattatg 1374
>gb|BT016454.1| Zea mays clone Contig287 mRNA sequence Length = 1335 Score = 357 bits (180), Expect = 3e-95 Identities = 277/308 (89%), Gaps = 1/308 (0%) Strand = Plus / Minus Query: 365 ctgtggaacagccaatctctcaaggttggcagcatagggcatgggtacatcagctccagc 424 |||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1050 ctgtggaacagctattctctcaaggttggcagcatagggcataggtacatcagctccagc 991 Query: 425 aatcctctcaattggagcatcaagatactcaaagctttcttctacaacagacatgcatat 484 |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 990 gatcctctcaactggggcatcaaggtactcaaagctttcttctacaacagacatgcatat 931 Query: 485 ctcagcaccaacaccatgctgggggaagccttcttcaagagtcaccaatctatttgtttt 544 ||| ||||||| ||||| || ||||| |||||||||| ||||||||||| || ||||| Sbjct: 930 ctcggcaccaatcccatgttgagggaacccttcttcaacagtcaccaatcggttggtttt 871 Query: 545 cctaacagatgcatttatggcggctctatccagtggcctaattgatcggaggttgatcac 604 ||| ||||||||||| || || |||||||| ||||| || || ||||| |||||||||| Sbjct: 870 cctgacagatgcattaatagcagctctatcaagtggtctgatcgatcgaaggttgatcat 811 Query: 605 ctcagcactgattccttccttgggacagtatctcagcagcctgaagagcatagccaacca 664 ||||||||||||||||||||| || ||||||||| |||||||| |||||||||||||||| Sbjct: 810 ctcagcactgattccttcctt-ggccagtatctctgcagcctggagagcatagccaacca 752 Query: 665 tcttggag 672 |||||||| Sbjct: 751 tcttggag 744
>gb|BT009320.1| Triticum aestivum clone wlm24.pk0002.b11:fis, full insert mRNA sequence Length = 1331 Score = 353 bits (178), Expect = 5e-94 Identities = 305/346 (88%), Gaps = 1/346 (0%) Strand = Plus / Minus Query: 323 tctgtagcaggctcgcctggccgctcggacgatatcctcaatctgtggaacagccaatct 382 ||||||||| |||||| | || || |||||||| ||||||| ||||||||| |||||||| Sbjct: 1197 tctgtagcaagctcgctttgctgcacggacgatgtcctcaacctgtggaactgccaatct 1138 Query: 383 ctcaaggttggcagcatagggcatgggtacatcagctccagcaatcctctcaattggagc 442 |||||||| || ||||||||||| |||||||||||||| ||||||||||||| ||| || Sbjct: 1137 ttcaaggtttgccgcatagggcatcggtacatcagctccggcaatcctctcaactggtgc 1078 Query: 443 atcaagatactcaaagctttcttctacaacagacatgcatatctcagcaccaacaccatg 502 |||||||||||||||||| || || || || ||||||||||| ||||||||||||||||| Sbjct: 1077 atcaagatactcaaagctgtcctccactacggacatgcatatttcagcaccaacaccatg 1018 Query: 503 ctgggggaagccttcttcaagagtcaccaatctatttgttttcctaacagatgcatttat 562 || || ||||||||||||| || |||||||| || ||||||||||| |||||||| || Sbjct: 1017 ttgtggaaagccttcttcaacggtaaccaatctgttggttttcctaacggatgcattgat 958 Query: 563 ggcggctctatccagtggcctaattgatcggaggttgatcacctcagcactgattccttc 622 || |||||||||| ||| |||||||| || |||||||||||||||||||||||||| || Sbjct: 957 agcagctctatccaatggtctaattgaccgaaggttgatcacctcagcactgattccctc 898 Query: 623 cttgggacagtatctcagcagcctgaagagcatagccaaccatctt 668 ||| |||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 897 ctt-ggacagtatctctgcagcctgaagagcatacccaaccatctt 853
>ref|XM_483531.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1587 Score = 349 bits (176), Expect = 7e-93 Identities = 309/352 (87%), Gaps = 1/352 (0%) Strand = Plus / Minus Query: 321 gctctgtagcaggctcgcctggccgctcggacgatatcctcaatctgtggaacagccaat 380 |||||||||||||||||| | || || || || || ||||||| |||||||||||||| Sbjct: 1262 gctctgtagcaggctcgcttcgctgcacgaacaatgtcctcaacctgtggaacagccatc 1203 Query: 381 ctctcaaggttggcagcatagggcatgggtacatcagctccagcaatcctctcaattgga 440 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 1202 ctctcaaggttggcagcgtagggcatgggcacatcagctccagcaatcctctcaactggc 1143 Query: 441 gcatcaagatactcaaagctttcttctacaacagacatgcatatctcagcaccaacacca 500 ||||||||||| |||||||| || |||||||||||||||||||| ||||| ||||| ||| Sbjct: 1142 gcatcaagatattcaaagctgtcctctacaacagacatgcatatttcagcgccaacccca 1083 Query: 501 tgctgggggaagccttcttcaagagtcaccaatctatttgttttcctaacagatgcattt 560 || || || || ||||||||||| || |||||||| || ||||||||||| |||||||| Sbjct: 1082 tgttgtggaaatccttcttcaagggttaccaatctgttggttttcctaactgatgcattg 1023 Query: 561 atggcggctctatccagtggcctaattgatcggaggttgatcacctcagcactgattcct 620 || | |||||||||| |||||||||||| || || ||||||||||||||||||||||| Sbjct: 1022 atagtagctctatccaatggcctaattgaccgaagattgatcacctcagcactgattccc 963 Query: 621 tccttgggacagtatctcagcagcctgaagagcatagccaaccatcttggag 672 ||||| ||| |||||||| ||||||||||||||||| || |||||||||||| Sbjct: 962 tcctt-ggaaagtatctctgcagcctgaagagcatatccgaccatcttggag 912
>ref|XM_507310.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0033D24.29 mRNA Length = 1658 Score = 349 bits (176), Expect = 7e-93 Identities = 309/352 (87%), Gaps = 1/352 (0%) Strand = Plus / Minus Query: 321 gctctgtagcaggctcgcctggccgctcggacgatatcctcaatctgtggaacagccaat 380 |||||||||||||||||| | || || || || || ||||||| |||||||||||||| Sbjct: 1266 gctctgtagcaggctcgcttcgctgcacgaacaatgtcctcaacctgtggaacagccatc 1207 Query: 381 ctctcaaggttggcagcatagggcatgggtacatcagctccagcaatcctctcaattgga 440 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 1206 ctctcaaggttggcagcgtagggcatgggcacatcagctccagcaatcctctcaactggc 1147 Query: 441 gcatcaagatactcaaagctttcttctacaacagacatgcatatctcagcaccaacacca 500 ||||||||||| |||||||| || |||||||||||||||||||| ||||| ||||| ||| Sbjct: 1146 gcatcaagatattcaaagctgtcctctacaacagacatgcatatttcagcgccaacccca 1087 Query: 501 tgctgggggaagccttcttcaagagtcaccaatctatttgttttcctaacagatgcattt 560 || || || || ||||||||||| || |||||||| || ||||||||||| |||||||| Sbjct: 1086 tgttgtggaaatccttcttcaagggttaccaatctgttggttttcctaactgatgcattg 1027 Query: 561 atggcggctctatccagtggcctaattgatcggaggttgatcacctcagcactgattcct 620 || | |||||||||| |||||||||||| || || ||||||||||||||||||||||| Sbjct: 1026 atagtagctctatccaatggcctaattgaccgaagattgatcacctcagcactgattccc 967 Query: 621 tccttgggacagtatctcagcagcctgaagagcatagccaaccatcttggag 672 ||||| ||| |||||||| ||||||||||||||||| || |||||||||||| Sbjct: 966 tcctt-ggaaagtatctctgcagcctgaagagcatatccgaccatcttggag 916
>dbj|AK104686.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C11, full insert sequence Length = 1587 Score = 349 bits (176), Expect = 7e-93 Identities = 309/352 (87%), Gaps = 1/352 (0%) Strand = Plus / Minus Query: 321 gctctgtagcaggctcgcctggccgctcggacgatatcctcaatctgtggaacagccaat 380 |||||||||||||||||| | || || || || || ||||||| |||||||||||||| Sbjct: 1262 gctctgtagcaggctcgcttcgctgcacgaacaatgtcctcaacctgtggaacagccatc 1203 Query: 381 ctctcaaggttggcagcatagggcatgggtacatcagctccagcaatcctctcaattgga 440 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 1202 ctctcaaggttggcagcgtagggcatgggcacatcagctccagcaatcctctcaactggc 1143 Query: 441 gcatcaagatactcaaagctttcttctacaacagacatgcatatctcagcaccaacacca 500 ||||||||||| |||||||| || |||||||||||||||||||| ||||| ||||| ||| Sbjct: 1142 gcatcaagatattcaaagctgtcctctacaacagacatgcatatttcagcgccaacccca 1083 Query: 501 tgctgggggaagccttcttcaagagtcaccaatctatttgttttcctaacagatgcattt 560 || || || || ||||||||||| || |||||||| || ||||||||||| |||||||| Sbjct: 1082 tgttgtggaaatccttcttcaagggttaccaatctgttggttttcctaactgatgcattg 1023 Query: 561 atggcggctctatccagtggcctaattgatcggaggttgatcacctcagcactgattcct 620 || | |||||||||| |||||||||||| || || ||||||||||||||||||||||| Sbjct: 1022 atagtagctctatccaatggcctaattgaccgaagattgatcacctcagcactgattccc 963 Query: 621 tccttgggacagtatctcagcagcctgaagagcatagccaaccatcttggag 672 ||||| ||| |||||||| ||||||||||||||||| || |||||||||||| Sbjct: 962 tcctt-ggaaagtatctctgcagcctgaagagcatatccgaccatcttggag 912
>dbj|AK071782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108B21, full insert sequence Length = 1658 Score = 349 bits (176), Expect = 7e-93 Identities = 309/352 (87%), Gaps = 1/352 (0%) Strand = Plus / Minus Query: 321 gctctgtagcaggctcgcctggccgctcggacgatatcctcaatctgtggaacagccaat 380 |||||||||||||||||| | || || || || || ||||||| |||||||||||||| Sbjct: 1266 gctctgtagcaggctcgcttcgctgcacgaacaatgtcctcaacctgtggaacagccatc 1207 Query: 381 ctctcaaggttggcagcatagggcatgggtacatcagctccagcaatcctctcaattgga 440 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 1206 ctctcaaggttggcagcgtagggcatgggcacatcagctccagcaatcctctcaactggc 1147 Query: 441 gcatcaagatactcaaagctttcttctacaacagacatgcatatctcagcaccaacacca 500 ||||||||||| |||||||| || |||||||||||||||||||| ||||| ||||| ||| Sbjct: 1146 gcatcaagatattcaaagctgtcctctacaacagacatgcatatttcagcgccaacccca 1087 Query: 501 tgctgggggaagccttcttcaagagtcaccaatctatttgttttcctaacagatgcattt 560 || || || || ||||||||||| || |||||||| || ||||||||||| |||||||| Sbjct: 1086 tgttgtggaaatccttcttcaagggttaccaatctgttggttttcctaactgatgcattg 1027 Query: 561 atggcggctctatccagtggcctaattgatcggaggttgatcacctcagcactgattcct 620 || | |||||||||| |||||||||||| || || ||||||||||||||||||||||| Sbjct: 1026 atagtagctctatccaatggcctaattgaccgaagattgatcacctcagcactgattccc 967 Query: 621 tccttgggacagtatctcagcagcctgaagagcatagccaaccatcttggag 672 ||||| ||| |||||||| ||||||||||||||||| || |||||||||||| Sbjct: 966 tcctt-ggaaagtatctctgcagcctgaagagcatatccgaccatcttggag 916
>gb|BT016804.1| Zea mays clone Contig637 mRNA sequence Length = 1826 Score = 280 bits (141), Expect = 6e-72 Identities = 298/349 (85%), Gaps = 1/349 (0%) Strand = Plus / Minus Query: 324 ctgtagcaggctcgcctggccgctcggacgatatcctcaatctgtggaacagccaatctc 383 |||||||| || ||| |||| || |||||||| || || | |||||||||||||| ||| Sbjct: 1425 ctgtagcaagcacgcttggctgcccggacgatgtcatcgacctgtggaacagccatcctc 1366 Query: 384 tcaaggttggcagcatagggcatgggtacatcagctccagcaatcctctcaattggagca 443 |||||||||||||| || |||||||| ||||||||||||||||||||||| | ||| ||| Sbjct: 1365 tcaaggttggcagcgtacggcatgggcacatcagctccagcaatcctctcgactggtgca 1306 Query: 444 tcaagatactcaaagctttcttctacaacagacatgcatatctcagcaccaacaccatgc 503 ||||||||||||||||| || |||||||||||||||||||| || ||||||| ||||| Sbjct: 1305 tcaagatactcaaagctgtcctctacaacagacatgcatatttccgcaccaatcccatgt 1246 Query: 504 tgggggaagccttcttcaagagtcaccaatctatttgttttcctaacagatgcatttatg 563 || |||||||||||||| | || ||||||||||| |||||||| ||||||||||| || Sbjct: 1245 tgagggaagccttcttctacggttaccaatctattggttttcctcacagatgcattaata 1186 Query: 564 gcggctctatccagtggcctaattgatcggaggttgatcacctcagcactgattccttcc 623 | ||||||||||| || |||||||| || || ||||| ||||| |||||||| |||||| Sbjct: 1185 gtagctctatccagcggtctaattgagcgaagattgattacctcggcactgataccttcc 1126 Query: 624 ttgggacagtatctcagcagcctgaagagcatagccaaccatcttggag 672 || || |||||| ||||| |||||||| ||||| || ||||| |||||| Sbjct: 1125 tt-ggccagtatatcagcggcctgaagggcatatcccaccattttggag 1078
>gb|AY107032.1| Zea mays PCO074087 mRNA sequence Length = 1752 Score = 280 bits (141), Expect = 6e-72 Identities = 298/349 (85%), Gaps = 1/349 (0%) Strand = Plus / Minus Query: 324 ctgtagcaggctcgcctggccgctcggacgatatcctcaatctgtggaacagccaatctc 383 |||||||| || ||| |||| || |||||||| || || | |||||||||||||| ||| Sbjct: 1402 ctgtagcaagcacgcttggctgcccggacgatgtcatcgacctgtggaacagccatcctc 1343 Query: 384 tcaaggttggcagcatagggcatgggtacatcagctccagcaatcctctcaattggagca 443 |||||||||||||| || |||||||| ||||||||||||||||||||||| | ||| ||| Sbjct: 1342 tcaaggttggcagcgtacggcatgggcacatcagctccagcaatcctctcgactggtgca 1283 Query: 444 tcaagatactcaaagctttcttctacaacagacatgcatatctcagcaccaacaccatgc 503 ||||||||||||||||| || |||||||||||||||||||| || ||||||| ||||| Sbjct: 1282 tcaagatactcaaagctgtcctctacaacagacatgcatatttccgcaccaatcccatgt 1223 Query: 504 tgggggaagccttcttcaagagtcaccaatctatttgttttcctaacagatgcatttatg 563 || |||||||||||||| | || ||||||||||| |||||||| ||||||||||| || Sbjct: 1222 tgagggaagccttcttctacggttaccaatctattggttttcctcacagatgcattaata 1163 Query: 564 gcggctctatccagtggcctaattgatcggaggttgatcacctcagcactgattccttcc 623 | ||||||||||| || |||||||| || || ||||| ||||| |||||||| |||||| Sbjct: 1162 gtagctctatccagcggtctaattgagcgaagattgattacctcggcactgataccttcc 1103 Query: 624 ttgggacagtatctcagcagcctgaagagcatagccaaccatcttggag 672 || || |||||| ||||| |||||||| ||||| || ||||| |||||| Sbjct: 1102 tt-ggccagtatatcagcggcctgaagggcatatcccaccattttggag 1055
>gb|AF069908.1|AF069908 Zea mays pyruvate dehydrogenase E1 beta subunit isoform 1 mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1511 Score = 280 bits (141), Expect = 6e-72 Identities = 298/349 (85%), Gaps = 1/349 (0%) Strand = Plus / Minus Query: 324 ctgtagcaggctcgcctggccgctcggacgatatcctcaatctgtggaacagccaatctc 383 |||||||| || ||| |||| || |||||||| || || | |||||||||||||| ||| Sbjct: 1172 ctgtagcaagcacgcttggctgcccggacgatgtcatcgacctgtggaacagccatcctc 1113 Query: 384 tcaaggttggcagcatagggcatgggtacatcagctccagcaatcctctcaattggagca 443 |||||||||||||| || |||||||| ||||||||||||||||||||||| | ||| ||| Sbjct: 1112 tcaaggttggcagcgtacggcatgggcacatcagctccagcaatcctctcgactggtgca 1053 Query: 444 tcaagatactcaaagctttcttctacaacagacatgcatatctcagcaccaacaccatgc 503 ||||||||||||||||| || |||||||||||||||||||| || ||||||| ||||| Sbjct: 1052 tcaagatactcaaagctgtcctctacaacagacatgcatatttccgcaccaatcccatgt 993 Query: 504 tgggggaagccttcttcaagagtcaccaatctatttgttttcctaacagatgcatttatg 563 || |||||||||||||| | || ||||||||||| |||||||| ||||||||||| || Sbjct: 992 tgagggaagccttcttctacggttaccaatctattggttttcctcacagatgcattaata 933 Query: 564 gcggctctatccagtggcctaattgatcggaggttgatcacctcagcactgattccttcc 623 | ||||||||||| || |||||||| || || ||||| ||||| |||||||| |||||| Sbjct: 932 gtagctctatccagcggtctaattgagcgaagattgattacctcggcactgataccttcc 873 Query: 624 ttgggacagtatctcagcagcctgaagagcatagccaaccatcttggag 672 || || |||||| ||||| |||||||| ||||| || ||||| |||||| Sbjct: 872 tt-ggccagtatatcagcggcctgaagggcatatcccaccattttggag 825
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 159 bits (80), Expect = 1e-35 Identities = 107/116 (92%) Strand = Plus / Minus Query: 365 ctgtggaacagccaatctctcaaggttggcagcatagggcatgggtacatcagctccagc 424 |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 26775392 ctgtggaacagccatcctctcaaggttggcagcgtagggcatgggcacatcagctccagc 26775333 Query: 425 aatcctctcaattggagcatcaagatactcaaagctttcttctacaacagacatgc 480 ||||||||||| ||| ||||||||||| |||||||| || |||||||||||||||| Sbjct: 26775332 aatcctctcaactggcgcatcaagatattcaaagctgtcctctacaacagacatgc 26775277 Score = 93.7 bits (47), Expect = 7e-16 Identities = 107/127 (84%) Strand = Plus / Minus Query: 480 catatctcagcaccaacaccatgctgggggaagccttcttcaagagtcaccaatctattt 539 ||||| ||||| ||||| ||||| || || || ||||||||||| || |||||||| || Sbjct: 26775191 catatttcagcgccaaccccatgttgtggaaatccttcttcaagggttaccaatctgttg 26775132 Query: 540 gttttcctaacagatgcatttatggcggctctatccagtggcctaattgatcggaggttg 599 ||||||||||| |||||||| || | |||||||||| |||||||||||| || || ||| Sbjct: 26775131 gttttcctaactgatgcattgatagtagctctatccaatggcctaattgaccgaagattg 26775072 Query: 600 atcacct 606 ||||||| Sbjct: 26775071 atcacct 26775065 Score = 54.0 bits (27), Expect = 6e-04 Identities = 43/47 (91%), Gaps = 1/47 (2%) Strand = Plus / Minus Query: 603 acctcagcactgattccttccttgggacagtatctcagcagcctgaa 649 ||||||||||||||||| ||||| ||| |||||||| |||||||||| Sbjct: 26774955 acctcagcactgattccctcctt-ggaaagtatctctgcagcctgaa 26774910 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 644 cctgaagagcatagccaaccatcttggag 672 ||||||||||||| || |||||||||||| Sbjct: 26773885 cctgaagagcatatccgaccatcttggag 26773857
>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0033D24 Length = 186132 Score = 159 bits (80), Expect = 1e-35 Identities = 107/116 (92%) Strand = Plus / Minus Query: 365 ctgtggaacagccaatctctcaaggttggcagcatagggcatgggtacatcagctccagc 424 |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 118734 ctgtggaacagccatcctctcaaggttggcagcgtagggcatgggcacatcagctccagc 118675 Query: 425 aatcctctcaattggagcatcaagatactcaaagctttcttctacaacagacatgc 480 ||||||||||| ||| ||||||||||| |||||||| || |||||||||||||||| Sbjct: 118674 aatcctctcaactggcgcatcaagatattcaaagctgtcctctacaacagacatgc 118619 Score = 93.7 bits (47), Expect = 7e-16 Identities = 107/127 (84%) Strand = Plus / Minus Query: 480 catatctcagcaccaacaccatgctgggggaagccttcttcaagagtcaccaatctattt 539 ||||| ||||| ||||| ||||| || || || ||||||||||| || |||||||| || Sbjct: 118533 catatttcagcgccaaccccatgttgtggaaatccttcttcaagggttaccaatctgttg 118474 Query: 540 gttttcctaacagatgcatttatggcggctctatccagtggcctaattgatcggaggttg 599 ||||||||||| |||||||| || | |||||||||| |||||||||||| || || ||| Sbjct: 118473 gttttcctaactgatgcattgatagtagctctatccaatggcctaattgaccgaagattg 118414 Query: 600 atcacct 606 ||||||| Sbjct: 118413 atcacct 118407 Score = 54.0 bits (27), Expect = 6e-04 Identities = 43/47 (91%), Gaps = 1/47 (2%) Strand = Plus / Minus Query: 603 acctcagcactgattccttccttgggacagtatctcagcagcctgaa 649 ||||||||||||||||| ||||| ||| |||||||| |||||||||| Sbjct: 118297 acctcagcactgattccctcctt-ggaaagtatctctgcagcctgaa 118252 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 644 cctgaagagcatagccaaccatcttggag 672 ||||||||||||| || |||||||||||| Sbjct: 117227 cctgaagagcatatccgaccatcttggag 117199
>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0665C04 Length = 177054 Score = 159 bits (80), Expect = 1e-35 Identities = 107/116 (92%) Strand = Plus / Minus Query: 365 ctgtggaacagccaatctctcaaggttggcagcatagggcatgggtacatcagctccagc 424 |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 38182 ctgtggaacagccatcctctcaaggttggcagcgtagggcatgggcacatcagctccagc 38123 Query: 425 aatcctctcaattggagcatcaagatactcaaagctttcttctacaacagacatgc 480 ||||||||||| ||| ||||||||||| |||||||| || |||||||||||||||| Sbjct: 38122 aatcctctcaactggcgcatcaagatattcaaagctgtcctctacaacagacatgc 38067 Score = 93.7 bits (47), Expect = 7e-16 Identities = 107/127 (84%) Strand = Plus / Minus Query: 480 catatctcagcaccaacaccatgctgggggaagccttcttcaagagtcaccaatctattt 539 ||||| ||||| ||||| ||||| || || || ||||||||||| || |||||||| || Sbjct: 37981 catatttcagcgccaaccccatgttgtggaaatccttcttcaagggttaccaatctgttg 37922 Query: 540 gttttcctaacagatgcatttatggcggctctatccagtggcctaattgatcggaggttg 599 ||||||||||| |||||||| || | |||||||||| |||||||||||| || || ||| Sbjct: 37921 gttttcctaactgatgcattgatagtagctctatccaatggcctaattgaccgaagattg 37862 Query: 600 atcacct 606 ||||||| Sbjct: 37861 atcacct 37855 Score = 54.0 bits (27), Expect = 6e-04 Identities = 43/47 (91%), Gaps = 1/47 (2%) Strand = Plus / Minus Query: 603 acctcagcactgattccttccttgggacagtatctcagcagcctgaa 649 ||||||||||||||||| ||||| ||| |||||||| |||||||||| Sbjct: 37745 acctcagcactgattccctcctt-ggaaagtatctctgcagcctgaa 37700 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 644 cctgaagagcatagccaaccatcttggag 672 ||||||||||||| || |||||||||||| Sbjct: 36675 cctgaagagcatatccgaccatcttggag 36647
>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0094K23, complete sequence Length = 167482 Score = 151 bits (76), Expect = 4e-33 Identities = 106/116 (91%) Strand = Plus / Minus Query: 365 ctgtggaacagccaatctctcaaggttggcagcatagggcatgggtacatcagctccagc 424 |||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 57652 ctgtgggacagccatcctctcaagattggcagcatagggcatgggtacatcagctccagc 57593 Query: 425 aatcctctcaattggagcatcaagatactcaaagctttcttctacaacagacatgc 480 ||| ||||||| ||| ||||||||||| ||||||||||| || ||||||||||||| Sbjct: 57592 aattctctcaactggtgcatcaagatattcaaagctttcctcaacaacagacatgc 57537 Score = 117 bits (59), Expect = 5e-23 Identities = 110/127 (86%) Strand = Plus / Minus Query: 480 catatctcagcaccaacaccatgctgggggaagccttcttcaagagtcaccaatctattt 539 |||||||||||||||| |||||||| ||||||| ||| |||| ||||||||||||||| Sbjct: 57458 catatctcagcaccaatcccatgctgtgggaagctttcctcaatggtcaccaatctattt 57399 Query: 540 gttttcctaacagatgcatttatggcggctctatccagtggcctaattgatcggaggttg 599 ||||| |||||||||||||| || | |||||||| ||||| |||||||| || ||||| Sbjct: 57398 gtttttctaacagatgcattgatagtagctctatcaagtggtctaattgaacgaaggttt 57339 Query: 600 atcacct 606 ||||||| Sbjct: 57338 atcacct 57332 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 598 tgatcacctcagcactgattccttccttgg 627 ||||||||||||||||||||||||| |||| Sbjct: 57230 tgatcacctcagcactgattccttctttgg 57201 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 295 atcacgcagttgccgccatgggcaacgctctgtagca 331 |||| |||||||| |||||||||| |||||||||||| Sbjct: 59001 atcaggcagttgctgccatgggcaccgctctgtagca 58965 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Minus Query: 644 cctgaagagcatagccaaccatcttggag 672 ||||||||||||| ||||||||||||||| Sbjct: 56780 cctgaagagcatatccaaccatcttggag 56752 Score = 44.1 bits (22), Expect = 0.59 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 192 ctcgcttcgagtttgggcaattg-tggataccattatg 228 ||||||| ||||||||||||||| |||| ||||||||| Sbjct: 59093 ctcgctttgagtttgggcaattgttggacaccattatg 59056
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 151 bits (76), Expect = 4e-33 Identities = 106/116 (91%) Strand = Plus / Minus Query: 365 ctgtggaacagccaatctctcaaggttggcagcatagggcatgggtacatcagctccagc 424 |||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 19462245 ctgtgggacagccatcctctcaagattggcagcatagggcatgggtacatcagctccagc 19462186 Query: 425 aatcctctcaattggagcatcaagatactcaaagctttcttctacaacagacatgc 480 ||| ||||||| ||| ||||||||||| ||||||||||| || ||||||||||||| Sbjct: 19462185 aattctctcaactggtgcatcaagatattcaaagctttcctcaacaacagacatgc 19462130 Score = 117 bits (59), Expect = 5e-23 Identities = 110/127 (86%) Strand = Plus / Minus Query: 480 catatctcagcaccaacaccatgctgggggaagccttcttcaagagtcaccaatctattt 539 |||||||||||||||| |||||||| ||||||| ||| |||| ||||||||||||||| Sbjct: 19462051 catatctcagcaccaatcccatgctgtgggaagctttcctcaatggtcaccaatctattt 19461992 Query: 540 gttttcctaacagatgcatttatggcggctctatccagtggcctaattgatcggaggttg 599 ||||| |||||||||||||| || | |||||||| ||||| |||||||| || ||||| Sbjct: 19461991 gtttttctaacagatgcattgatagtagctctatcaagtggtctaattgaacgaaggttt 19461932 Query: 600 atcacct 606 ||||||| Sbjct: 19461931 atcacct 19461925 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 598 tgatcacctcagcactgattccttccttgg 627 ||||||||||||||||||||||||| |||| Sbjct: 19461823 tgatcacctcagcactgattccttctttgg 19461794 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 295 atcacgcagttgccgccatgggcaacgctctgtagca 331 |||| |||||||| |||||||||| |||||||||||| Sbjct: 19463594 atcaggcagttgctgccatgggcaccgctctgtagca 19463558 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Minus Query: 644 cctgaagagcatagccaaccatcttggag 672 ||||||||||||| ||||||||||||||| Sbjct: 19461373 cctgaagagcatatccaaccatcttggag 19461345 Score = 44.1 bits (22), Expect = 0.59 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 192 ctcgcttcgagtttgggcaattg-tggataccattatg 228 ||||||| ||||||||||||||| |||| ||||||||| Sbjct: 19463686 ctcgctttgagtttgggcaattgttggacaccattatg 19463649
>gb|U56697.1|PSU56697 Pisum sativum pyruvate dehydrogenase E1beta mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1522 Score = 123 bits (62), Expect = 8e-25 Identities = 255/318 (80%), Gaps = 1/318 (0%) Strand = Plus / Minus Query: 348 cggacgatatcctcaatctgtggaacagccaatctctcaaggttggcagcatagggcatg 407 ||||||||||| |||| ||||| ||| |||||||||| || || | ||||| |||||| Sbjct: 1133 cggacgatatcttcaacatgtgggacaaccaatctctcgagattacctgcataaggcatg 1074 Query: 408 ggtacatcagctccagcaatcctctcaattggagcatcaagatactcaaagctttcttct 467 || |||||||| ||| |||| ||||| | | |||||||||||| |||| ||||| || Sbjct: 1073 ggaacatcagcgccaccaattctctcgacagttgcatcaagatacccaaaactttcctca 1014 Query: 468 acaacagacatgcatatctcagcaccaacaccatgctgggggaagccttcttcaagagtc 527 | ||||| | || || ||||| |||||||| ||||| || || |||||||||| ||| Sbjct: 1013 atgacagaagtacagatttcagcgccaacaccgtgctgaggaaatccttcttcaactgtc 954 Query: 528 accaatctatttgttttcctaacagatgcatttatggcggctctatccagtggcctaatt 587 |||||||| || |||||||| || || ||||| |||| || || ||| |||||||| ||| Sbjct: 953 accaatctgttggttttccttacggaagcattgatggtgggtcgatcaagtggcctgatt 894 Query: 588 gatcggaggttgatcacctcagcactgattccttccttgggacagtatctcagcagcctg 647 || || | || || ||||| ||||||||||||||||| | |||||||||||||||| Sbjct: 893 gaccgtaaattaataacctcggcactgattccttccttttca-agtatctcagcagcctt 835 Query: 648 aagagcatagccaaccat 665 |||||| |||||||||| Sbjct: 834 tagagcaaagccaaccat 817
>ref|NM_124463.2| Arabidopsis thaliana pyruvate dehydrogenase (acetyl-transferring) AT5G50850 mRNA, complete cds Length = 1543 Score = 89.7 bits (45), Expect = 1e-14 Identities = 213/269 (79%) Strand = Plus / Minus Query: 351 acgatatcctcaatctgtggaacagccaatctctcaaggttggcagcatagggcatgggt 410 ||||| ||||| ||||| |||| |||||||||||| ||||| || ||||| ||||| || Sbjct: 1201 acgatgtcctctatctgaggaagagccaatctctctaggttagctgcatacggcattgga 1142 Query: 411 acatcagctccagcaatcctctcaattggagcatcaagatactcaaagctttcttctaca 470 ||||||||||| ||||||||||| | || ||||| | ||| |||||| ||||||||| Sbjct: 1141 acatcagctcctgcaatcctctcgaccggtgcatccaagtacgaaaagctctcttctaca 1082 Query: 471 acagacatgcatatctcagcaccaacaccatgctgggggaagccttcttcaagagtcacc 530 || ||| || || || |||| || ||||| || ||||| |||||||||| || ||| Sbjct: 1081 accgacgcacaaatttctgcacagactccatgttgtgggaaaccttcttcaactgttacc 1022 Query: 531 aatctatttgttttcctaacagatgcatttatggcggctctatccagtggcctaattgat 590 |||||| | |||||||| || || ||||| |||| ||||| || || || | |||||| Sbjct: 1021 aatctactcgttttcctcactgaagcattgatggtggctcggtcaagcggacggattgat 962 Query: 591 cggaggttgatcacctcagcactgattcc 619 || || || || ||||||||||| ||||| Sbjct: 961 cgaagatttattacctcagcacttattcc 933
>gb|BT000839.1| Arabidopsis thaliana At5g50850/K16E14_1 mRNA, complete cds Length = 1092 Score = 89.7 bits (45), Expect = 1e-14 Identities = 213/269 (79%) Strand = Plus / Minus Query: 351 acgatatcctcaatctgtggaacagccaatctctcaaggttggcagcatagggcatgggt 410 ||||| ||||| ||||| |||| |||||||||||| ||||| || ||||| ||||| || Sbjct: 1055 acgatgtcctctatctgaggaagagccaatctctctaggttagctgcatacggcattgga 996 Query: 411 acatcagctccagcaatcctctcaattggagcatcaagatactcaaagctttcttctaca 470 ||||||||||| ||||||||||| | || ||||| | ||| |||||| ||||||||| Sbjct: 995 acatcagctcctgcaatcctctcgaccggtgcatccaagtacgaaaagctctcttctaca 936 Query: 471 acagacatgcatatctcagcaccaacaccatgctgggggaagccttcttcaagagtcacc 530 || ||| || || || |||| || ||||| || ||||| |||||||||| || ||| Sbjct: 935 accgacgcacaaatttctgcacagactccatgttgtgggaaaccttcttcaactgttacc 876 Query: 531 aatctatttgttttcctaacagatgcatttatggcggctctatccagtggcctaattgat 590 |||||| | |||||||| || || ||||| |||| ||||| || || || | |||||| Sbjct: 875 aatctactcgttttcctcactgaagcattgatggtggctcggtcaagcggacggattgat 816 Query: 591 cggaggttgatcacctcagcactgattcc 619 || || || || ||||||||||| ||||| Sbjct: 815 cgaagatttattacctcagcacttattcc 787
>gb|AY070728.1| Arabidopsis thaliana AT5g50850/K16E14_1 mRNA, complete cds Length = 1401 Score = 89.7 bits (45), Expect = 1e-14 Identities = 213/269 (79%) Strand = Plus / Minus Query: 351 acgatatcctcaatctgtggaacagccaatctctcaaggttggcagcatagggcatgggt 410 ||||| ||||| ||||| |||| |||||||||||| ||||| || ||||| ||||| || Sbjct: 1183 acgatgtcctctatctgaggaagagccaatctctctaggttagctgcatacggcattgga 1124 Query: 411 acatcagctccagcaatcctctcaattggagcatcaagatactcaaagctttcttctaca 470 ||||||||||| ||||||||||| | || ||||| | ||| |||||| ||||||||| Sbjct: 1123 acatcagctcctgcaatcctctcgaccggtgcatccaagtacgaaaagctctcttctaca 1064 Query: 471 acagacatgcatatctcagcaccaacaccatgctgggggaagccttcttcaagagtcacc 530 || ||| || || || |||| || ||||| || ||||| |||||||||| || ||| Sbjct: 1063 accgacgcacaaatttctgcacagactccatgttgtgggaaaccttcttcaactgttacc 1004 Query: 531 aatctatttgttttcctaacagatgcatttatggcggctctatccagtggcctaattgat 590 |||||| | |||||||| || || ||||| |||| ||||| || || || | |||||| Sbjct: 1003 aatctactcgttttcctcactgaagcattgatggtggctcggtcaagcggacggattgat 944 Query: 591 cggaggttgatcacctcagcactgattcc 619 || || || || ||||||||||| ||||| Sbjct: 943 cgaagatttattacctcagcacttattcc 915
>emb|BX830767.1|CNS0A1QX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS21ZA07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1317 Score = 89.7 bits (45), Expect = 1e-14 Identities = 213/269 (79%) Strand = Plus / Minus Query: 351 acgatatcctcaatctgtggaacagccaatctctcaaggttggcagcatagggcatgggt 410 ||||| ||||| ||||| |||| |||||||||||| ||||| || ||||| ||||| || Sbjct: 1166 acgatgtcctctatctgaggaagagccaatctctctaggttagctgcatacggcattgga 1107 Query: 411 acatcagctccagcaatcctctcaattggagcatcaagatactcaaagctttcttctaca 470 ||||||||||| ||||||||||| | || ||||| | ||| |||||| ||||||||| Sbjct: 1106 acatcagctcctgcaatcctctcgaccggtgcatccaagtacgaaaagctctcttctaca 1047 Query: 471 acagacatgcatatctcagcaccaacaccatgctgggggaagccttcttcaagagtcacc 530 || ||| || || || |||| || ||||| || ||||| |||||||||| || ||| Sbjct: 1046 accgacgcacaaatttctgcacagactccatgttgtgggaaaccttcttcaactgttacc 987 Query: 531 aatctatttgttttcctaacagatgcatttatggcggctctatccagtggcctaattgat 590 |||||| | |||||||| || || ||||| |||| ||||| || || || | |||||| Sbjct: 986 aatctactcgttttcctcactgaagcattgatggtggctcggtcaagcggacggattgat 927 Query: 591 cggaggttgatcacctcagcactgattcc 619 || || || || ||||||||||| ||||| Sbjct: 926 cgaagatttattacctcagcacttattcc 898
>gb|BT013848.1| Lycopersicon esculentum clone 132808R, mRNA sequence Length = 1659 Score = 81.8 bits (41), Expect = 3e-12 Identities = 137/169 (81%) Strand = Plus / Minus Query: 354 atatcctcaatctgtggaacagccaatctctcaaggttggcagcatagggcatgggtaca 413 ||||| ||||||||||||||||||| ||| || || || || ||||| ||||| || || Sbjct: 1196 atatcttcaatctgtggaacagccattctttctagatttgctgcatatggcatcggaacg 1137 Query: 414 tcagctccagcaatcctctcaattggagcatcaagatactcaaagctttcttctacaaca 473 ||||| |||| |||||||||| ||| ||||||||||| ||||| ||||| || || ||| Sbjct: 1136 tcagccccagatatcctctcaactggtgcatcaagatattcaaaactttcctcaaccaca 1077 Query: 474 gacatgcatatctcagcaccaacaccatgctgggggaagccttcttcaa 522 || || |||||||| ||||| || || || ||||| |||||||||| Sbjct: 1076 gaagcacagatctcagctccaacgccgtgttgtgggaacccttcttcaa 1028
>emb|AJ718902.1| Nicotiana tabacum cDNA-AFLP-fragment BSTC23-4-295, cultivar Bright Yellow 2 Length = 226 Score = 75.8 bits (38), Expect = 2e-10 Identities = 60/66 (90%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 603 acctcagcactgattccttccttgggacagtatctcagcagcctgaagagcatagccaac 662 ||||||||||| ||||||||||| | | || || |||||||||||||||||||||||||| Sbjct: 185 acctcagcactaattccttccttagca-agaatttcagcagcctgaagagcatagccaac 127 Query: 663 catctt 668 |||||| Sbjct: 126 catctt 121
>gb|U09137.1|ATU09137 Arabidopsis thaliana pyruvate dehydrogenase E1 beta subunit mRNA, complete cds Length = 1214 Score = 73.8 bits (37), Expect = 7e-10 Identities = 211/269 (78%) Strand = Plus / Minus Query: 351 acgatatcctcaatctgtggaacagccaatctctcaaggttggcagcatagggcatgggt 410 ||||| ||||| ||||| |||| |||||||||||| ||||| || | ||| || || || Sbjct: 1124 acgatgtcctctatctgaggaagagccaatctctctaggttagctgtatacgggattgga 1065 Query: 411 acatcagctccagcaatcctctcaattggagcatcaagatactcaaagctttcttctaca 470 ||||||||||| ||||||||||| | || ||||| | ||| |||||| ||||||||| Sbjct: 1064 acatcagctcctgcaatcctctcgaccggtgcatccaagtacgaaaagctctcttctaca 1005 Query: 471 acagacatgcatatctcagcaccaacaccatgctgggggaagccttcttcaagagtcacc 530 || ||| || || || |||| || ||||| || ||||| |||||||||| || ||| Sbjct: 1004 accgacgcacaaatttctgcacagactccatgttgtgggaaaccttcttcaactgttacc 945 Query: 531 aatctatttgttttcctaacagatgcatttatggcggctctatccagtggcctaattgat 590 |||||| | |||||||| || || ||||| |||| ||||| || || || | |||||| Sbjct: 944 aatctactcgttttcctcactgaagcattgatggtggctcggtcaagcggacggattgat 885 Query: 591 cggaggttgatcacctcagcactgattcc 619 || || || || ||||||||||| ||||| Sbjct: 884 cgaagatttattacctcagcacttattcc 856
>dbj|AB026637.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16E14 Length = 8850 Score = 65.9 bits (33), Expect = 2e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 369 ggaacagccaatctctcaaggttggcagcatagggcatgggtacatcagctccagcaatc 428 |||| |||||||||||| ||||| || ||||| ||||| || ||||||||||| |||||| Sbjct: 4177 ggaagagccaatctctctaggttagctgcatacggcattggaacatcagctcctgcaatc 4118 Query: 429 ctctc 433 ||||| Sbjct: 4117 ctctc 4113
>ref|XM_780098.1| PREDICTED: Strongylocentrotus purpuratus similar to pyruvate dehydrogenase (lipoamide) beta (LOC580017), mRNA Length = 1197 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 396 gcatagggcatgggtacatcagctcc 421 |||||||||||||||||||||||||| Sbjct: 1004 gcatagggcatgggtacatcagctcc 979
>gb|AC111733.5| Rattus norvegicus 13 BAC CH230-170L19 (Children's Hospital Oakland Research Institute) complete sequence Length = 138366 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 163 catgccaaggcacacctacaaaa 185 ||||||||||||||||||||||| Sbjct: 87859 catgccaaggcacacctacaaaa 87837
>gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete sequence Length = 131563 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 603 acctcagcactgattccttcctt 625 ||||||||||||||||||||||| Sbjct: 35452 acctcagcactgattccttcctt 35430
>gb|AC154100.7| Mus musculus chromosome 5, clone RP24-154F3, complete sequence Length = 200945 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 459 ctttcttctacaacagacatgc 480 |||||||||||||||||||||| Sbjct: 94403 ctttcttctacaacagacatgc 94424
>gb|AC151474.2| Mus musculus BAC clone RP23-338P12 from 5, complete sequence Length = 226403 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 459 ctttcttctacaacagacatgc 480 |||||||||||||||||||||| Sbjct: 93953 ctttcttctacaacagacatgc 93974
>dbj|AK221139.1| Arabidopsis thaliana mRNA for pyruvate dehydrogenase E1 component beta subunit, partial cds, clone: RAFL22-93-C02 Length = 401 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 351 acgatatcctcaatctgtggaacagccaatctctcaaggtt 391 ||||| ||||| ||||| |||| |||||||||||| ||||| Sbjct: 48 acgatgtcctctatctgaggaagagccaatctctctaggtt 8
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 aagatactcaaagctttctt 465 |||||||||||||||||||| Sbjct: 228934 aagatactcaaagctttctt 228915
>gb|AC117787.8| Mus musculus chromosome 1, clone RP24-546N2, complete sequence Length = 203962 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ataaacatgccaaggcacac 177 |||||||||||||||||||| Sbjct: 86856 ataaacatgccaaggcacac 86837
>gb|AC102794.8| Mus musculus chromosome 3, clone RP23-235G13, complete sequence Length = 166028 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 ctaaaagaataaacatgcca 169 |||||||||||||||||||| Sbjct: 142998 ctaaaagaataaacatgcca 143017
>ref|XM_462053.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G12771g) partial mRNA Length = 900 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gaaagctgcgtgcgtaataa 93 |||||||||||||||||||| Sbjct: 443 gaaagctgcgtgcgtaataa 424
>gb|AY658595.1| Synthetic construct Peudomonas aeruginosa clone FLH034108.01F PA5524 gene, partial cds Length = 783 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 tttcgatcacgcagttgccgccat 313 ||||||||| |||||||||||||| Sbjct: 769 tttcgatcaggcagttgccgccat 746
>gb|AC165944.3| Mus musculus chromosome 3, clone RP24-134A8, complete sequence Length = 175118 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 ctaaaagaataaacatgcca 169 |||||||||||||||||||| Sbjct: 120178 ctaaaagaataaacatgcca 120197
>gb|AC140206.2| Mus musculus BAC clone RP24-446O8 from chromosome 16, complete sequence Length = 195790 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 taaaagaataaacatgccaaggca 174 |||||||||||| ||||||||||| Sbjct: 194977 taaaagaataaaaatgccaaggca 195000
>gb|AC129320.5| Mus musculus BAC clone RP24-133J7 from chromosome 16, complete sequence Length = 183323 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 taaaagaataaacatgccaaggca 174 |||||||||||| ||||||||||| Sbjct: 104896 taaaagaataaaaatgccaaggca 104919
>gb|AC164551.2| Mus musculus BAC clone RP23-365G9 from chromosome 16, complete sequence Length = 215805 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 151 taaaagaataaacatgccaaggca 174 |||||||||||| ||||||||||| Sbjct: 133728 taaaagaataaaaatgccaaggca 133705
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gaaagctgcgtgcgtaataa 93 |||||||||||||||||||| Sbjct: 979457 gaaagctgcgtgcgtaataa 979438
>gb|AC148482.10| Medicago truncatula clone mth2-36j11, complete sequence Length = 115873 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 540 gttttcctaacagatgcatt 559 |||||||||||||||||||| Sbjct: 3424 gttttcctaacagatgcatt 3443
>dbj|AB226054.1| Aspergillus oryzae cDNA, contig sequence: AoEST2911 Length = 1485 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 591 cggaggttgatcacctcagc 610 |||||||||||||||||||| Sbjct: 1013 cggaggttgatcacctcagc 994
>dbj|AB223415.1| Aspergillus oryzae cDNA, contig sequence: AoEST0247 Length = 891 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 591 cggaggttgatcacctcagc 610 |||||||||||||||||||| Sbjct: 741 cggaggttgatcacctcagc 722
>dbj|AP007165.1| Aspergillus oryzae RIB40 genomic DNA, SC124 Length = 249334 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 591 cggaggttgatcacctcagc 610 |||||||||||||||||||| Sbjct: 199400 cggaggttgatcacctcagc 199381
>gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome Length = 1471282 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 629 acagtatctcagcagcctgaagagcata 656 |||| ||||||||||||| ||||||||| Sbjct: 1375298 acagaatctcagcagcctcaagagcata 1375325
>gb|AE004965.1| Pseudomonas aeruginosa PAO1, section 526 of 529 of the complete genome Length = 10353 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 tttcgatcacgcagttgccgccat 313 ||||||||| |||||||||||||| Sbjct: 878 tttcgatcaggcagttgccgccat 855
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence Length = 2906179 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gcacacctacaaaaatttaa 191 |||||||||||||||||||| Sbjct: 603771 gcacacctacaaaaatttaa 603752
>emb|AL954848.9| Zebrafish DNA sequence from clone CH211-281G7, complete sequence Length = 170178 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 gcatcaagatactcaaagct 460 |||||||||||||||||||| Sbjct: 71830 gcatcaagatactcaaagct 71811
>gb|AC132328.3| Mus musculus BAC clone RP24-195C6 from 10, complete sequence Length = 146064 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ataaacatgccaaggcacac 177 |||||||||||||||||||| Sbjct: 94792 ataaacatgccaaggcacac 94811 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,889,997 Number of Sequences: 3902068 Number of extensions: 5889997 Number of successful extensions: 118767 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118522 Number of HSP's gapped (non-prelim): 230 length of query: 672 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 649 effective length of database: 17,143,297,704 effective search space: 11126000209896 effective search space used: 11126000209896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)