| Clone Name | rbags22k11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106370.1| Zea mays PCO098993 mRNA sequence Length = 1720 Score = 198 bits (100), Expect = 2e-47 Identities = 163/184 (88%) Strand = Plus / Minus Query: 428 cttttcccttgatatgtgatactacctacaggagatactacaacggcggtccctgtgcag 487 ||||||||||||||||| || || || |||||||| || ||||| || || ||||||||| Sbjct: 1297 cttttcccttgatatgtaatgctcccaacaggagacaccacaacagcagttcctgtgcag 1238 Query: 488 aacacttcatcagcatcaagcaactcatccacggacacgagccgctcctcaacctggaag 547 || || |||||||||||||||| |||||||| || || ||||||||||||||||||||| Sbjct: 1237 aatacctcatcagcatcaagcagttcatccactgaaacaagccgctcctcaacctggaag 1178 Query: 548 cctttactcagagcaacatcaattatacttttccttgtgatgcccggtagtattgttcct 607 |||||||||| |||||| ||||||||||||||||||||||| || |||| |||||||||| Sbjct: 1177 cctttactcaaagcaacgtcaattatacttttccttgtgataccaggtaatattgttcct 1118 Query: 608 ttta 611 |||| Sbjct: 1117 ttta 1114
>ref|NM_197648.1| Oryza sativa (japonica cultivar-group) putative aminotransferase (OSJNBa0082M15.2), mRNA Length = 1449 Score = 190 bits (96), Expect = 4e-45 Identities = 225/268 (83%) Strand = Plus / Minus Query: 344 gcctggcccatctggaggcttgtcagcgaggtgtacaattgctgagacacagcgccgact 403 |||||||||||||| |||||||||| || || || | ||||||||||| | || ||| Sbjct: 1109 gcctggcccatctgcaggcttgtcaatgaagtatatagctgctgagacacgacaccaact 1050 Query: 404 ccttgcttgccagaatactctatccttttcccttgatatgtgatactacctacaggagat 463 |||| ||||||| ||| || | ||||||||||||||| || |||||||| |||||||| Sbjct: 1049 cctttgttgccagcatattcgacccttttcccttgataggtaatactacccacaggagac 990 Query: 464 actacaacggcggtccctgtgcagaacacttcatcagcatcaagcaactcatccacggac 523 ||||| || || || ||||||||||| || |||||||| ||||||| ||| || || ||| Sbjct: 989 actacgacagcagttcctgtgcagaaaacctcatcagcttcaagcagctcgtctactgac 930 Query: 524 acgagccgctcctcaacctggaagcctttactcagagcaacatcaattatacttttcctt 583 || || |||||||| |||||||| || || ||||||||||||||||| |||||||||||| Sbjct: 929 acaagtcgctcctcgacctggaaacccttgctcagagcaacatcaatgatacttttcctt 870 Query: 584 gtgatgcccggtagtattgttcctttta 611 |||||||| || | |||||||||||||| Sbjct: 869 gtgatgcctggcaatattgttcctttta 842
>dbj|AK071103.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077F14, full insert sequence Length = 883 Score = 190 bits (96), Expect = 4e-45 Identities = 225/268 (83%) Strand = Plus / Minus Query: 344 gcctggcccatctggaggcttgtcagcgaggtgtacaattgctgagacacagcgccgact 403 |||||||||||||| |||||||| | || || || | ||||||||||| | || ||| Sbjct: 604 gcctggcccatctgcaggcttgttaatgaagtatatagctgctgagacacgacaccaact 545 Query: 404 ccttgcttgccagaatactctatccttttcccttgatatgtgatactacctacaggagat 463 |||| ||||||| ||| || | ||||||||||||||| || |||||||| |||||||| Sbjct: 544 cctttgttgccagcatattcgacccttttcccttgataggtaatactacccacaggagac 485 Query: 464 actacaacggcggtccctgtgcagaacacttcatcagcatcaagcaactcatccacggac 523 ||||| || || || ||||||||||| || |||||||| ||||||| |||||| || ||| Sbjct: 484 actacgacagcagttcctgtgcagaaaacctcatcagcttcaagcagctcatctactgac 425 Query: 524 acgagccgctcctcaacctggaagcctttactcagagcaacatcaattatacttttcctt 583 || || |||||||| |||||||| || || ||||||||||||||||| |||||||||||| Sbjct: 424 acaagtcgctcctcgacctggaaacccttgctcagagcaacatcaatgatacttttcctt 365 Query: 584 gtgatgcccggtagtattgttcctttta 611 |||||||| || | |||||||||||||| Sbjct: 364 gtgatgcctggcaatattgttcctttta 337
>dbj|AK072756.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138J17, full insert sequence Length = 2016 Score = 182 bits (92), Expect = 9e-43 Identities = 224/268 (83%) Strand = Plus / Minus Query: 344 gcctggcccatctggaggcttgtcagcgaggtgtacaattgctgagacacagcgccgact 403 |||||||||||||| |||||||| | || || || | ||||||||||| | || ||| Sbjct: 1725 gcctggcccatctgcaggcttgttaatgaagtatatagctgctgagacacgacaccaact 1666 Query: 404 ccttgcttgccagaatactctatccttttcccttgatatgtgatactacctacaggagat 463 |||| ||||||| ||| || | ||||||||||||||| || |||||||| |||||||| Sbjct: 1665 cctttgttgccagcatattcgacccttttcccttgataggtaatactacccacaggagac 1606 Query: 464 actacaacggcggtccctgtgcagaacacttcatcagcatcaagcaactcatccacggac 523 ||||| || || || ||||||||||| || ||| |||| ||||||| |||||| || ||| Sbjct: 1605 actacgacagcagttcctgtgcagaaaacctcagcagcttcaagcagctcatctactgac 1546 Query: 524 acgagccgctcctcaacctggaagcctttactcagagcaacatcaattatacttttcctt 583 || || |||||||| |||||||| || || ||||||||||||||||| |||||||||||| Sbjct: 1545 acaagtcgctcctcgacctggaaacccttgctcagagcaacatcaatgatacttttcctt 1486 Query: 584 gtgatgcccggtagtattgttcctttta 611 |||||||| || | |||||||||||||| Sbjct: 1485 gtgatgcctggcaatattgttcctttta 1458
>ref|NM_187638.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1218 Score = 111 bits (56), Expect = 3e-21 Identities = 211/262 (80%), Gaps = 3/262 (1%) Strand = Plus / Minus Query: 350 cccatctggaggcttgtcagcgaggtgtacaattgctgagacacagcgccgactccttgc 409 ||||||||||||||||| || || || |||| |||||| |||| |||| |||||||| Sbjct: 1172 cccatctggaggcttgtaagtgaagtatacagctgctgacacaccacgcccactccttgg 1113 Query: 410 ttgccagaatactctatccttttcccttgatatgtgatactacctacaggagatactaca 469 |||||| || || | ||||| ||| |||| || || || || ||||| || || ||| Sbjct: 1112 ttgcca---tattccaccctttgccccagataagttatgctccccacaggggacaccaca 1056 Query: 470 acggcggtccctgtgcagaacacttcatcagcatcaagcaactcatccacggacacgagc 529 || || || || |||||||| ||||||||||| ||||| | ||||||||| ||||| || Sbjct: 1055 acagctgttcccgtgcagaaaacttcatcagcttcaagaagctcatccactgacacaagg 996 Query: 530 cgctcctcaacctggaagcctttactcagagcaacatcaattatacttttccttgtgatg 589 |||||||||||| ||||||||| ||| ||||||| |||| |||||||||||||| || Sbjct: 995 cgctcctcaaccatgaagccttttctctgagcaacttcaagaatacttttccttgttata 936 Query: 590 cccggtagtattgttcctttta 611 || || ||||| |||||||||| Sbjct: 935 ccaggcagtatggttcctttta 914
>dbj|AK108687.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-C06, full insert sequence Length = 1472 Score = 111 bits (56), Expect = 3e-21 Identities = 211/262 (80%), Gaps = 3/262 (1%) Strand = Plus / Minus Query: 350 cccatctggaggcttgtcagcgaggtgtacaattgctgagacacagcgccgactccttgc 409 ||||||||||||||||| || || || |||| |||||| |||| |||| |||||||| Sbjct: 1231 cccatctggaggcttgtaagtgaagtatacagctgctgacacaccacgcccactccttgg 1172 Query: 410 ttgccagaatactctatccttttcccttgatatgtgatactacctacaggagatactaca 469 |||||| || || | ||||| ||| |||| || || || || ||||| || || ||| Sbjct: 1171 ttgcca---tattccaccctttgccccagataagttatgctccccacaggggacaccaca 1115 Query: 470 acggcggtccctgtgcagaacacttcatcagcatcaagcaactcatccacggacacgagc 529 || || || || |||||||| ||||||||||| ||||| | ||||||||| ||||| || Sbjct: 1114 acagctgttcccgtgcagaaaacttcatcagcttcaagaagctcatccactgacacaagg 1055 Query: 530 cgctcctcaacctggaagcctttactcagagcaacatcaattatacttttccttgtgatg 589 |||||||||||| ||||||||| ||| ||||||| |||| |||||||||||||| || Sbjct: 1054 cgctcctcaaccatgaagccttttctctgagcaacttcaagaatacttttccttgttata 995 Query: 590 cccggtagtattgttcctttta 611 || || ||||| |||||||||| Sbjct: 994 ccaggcagtatggttcctttta 973
>gb|AC144735.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0001A14, complete sequence Length = 129292 Score = 95.6 bits (48), Expect = 2e-16 Identities = 99/116 (85%) Strand = Plus / Minus Query: 427 ccttttcccttgatatgtgatactacctacaggagatactacaacggcggtccctgtgca 486 ||||||||||||||| || |||||||| |||||||| ||||| || || || |||||||| Sbjct: 30807 ccttttcccttgataggtaatactacccacaggagacactacgacagcagttcctgtgca 30748 Query: 487 gaacacttcatcagcatcaagcaactcatccacggacacgagccgctcctcaacct 542 ||| || |||||||| ||||||| |||||| || ||||| || |||||||| |||| Sbjct: 30747 gaaaacctcatcagcttcaagcagctcatctactgacacaagtcgctcctcgacct 30692 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Minus Query: 539 acctggaagcctttactcagagcaacatcaattatacttttccttgtgatgcccggtagt 598 |||||||| || || ||||||||||||||||| |||||||||||||||||||| || | | Sbjct: 30301 acctggaaacccttgctcagagcaacatcaatgatacttttccttgtgatgcctggcaat 30242 Query: 599 attgttcctttta 611 ||||||||||||| Sbjct: 30241 attgttcctttta 30229
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 95.6 bits (48), Expect = 2e-16 Identities = 99/116 (85%) Strand = Plus / Minus Query: 427 ccttttcccttgatatgtgatactacctacaggagatactacaacggcggtccctgtgca 486 ||||||||||||||| || |||||||| |||||||| ||||| || || || |||||||| Sbjct: 27563531 ccttttcccttgataggtaatactacccacaggagacactacgacagcagttcctgtgca 27563472 Query: 487 gaacacttcatcagcatcaagcaactcatccacggacacgagccgctcctcaacct 542 ||| || |||||||| ||||||| |||||| || ||||| || |||||||| |||| Sbjct: 27563471 gaaaacctcatcagcttcaagcagctcatctactgacacaagtcgctcctcgacct 27563416 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Minus Query: 539 acctggaagcctttactcagagcaacatcaattatacttttccttgtgatgcccggtagt 598 |||||||| || || ||||||||||||||||| |||||||||||||||||||| || | | Sbjct: 27563025 acctggaaacccttgctcagagcaacatcaatgatacttttccttgtgatgcctggcaat 27562966 Query: 599 attgttcctttta 611 ||||||||||||| Sbjct: 27562965 attgttcctttta 27562953
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete sequence Length = 158550 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Plus Query: 539 acctggaagcctttactcagagcaacatcaattatacttttccttgtgatgcccggtagt 598 |||||||| || || ||||||||||||||||| |||||||||||||||||||| || | | Sbjct: 59883 acctggaaacccttgctcagagcaacatcaatgatacttttccttgtgatgcctggcaat 59942 Query: 599 attgttcctttta 611 ||||||||||||| Sbjct: 59943 attgttcctttta 59955 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Plus Query: 427 ccttttcccttgatatgtgatactacctacaggagatactacaacggcggtccctgtgca 486 ||||||||||||||| || |||||||| |||||||| ||||| || || || |||||||| Sbjct: 59359 ccttttcccttgataggtaatactacccacaggagacactacgacagcagttcctgtgca 59418 Query: 487 gaacacttcatcagcatcaagcaactcatccacggacacgagccgctcctcaacct 542 ||| || |||||||| ||||||| ||| || || ||||| || |||||||| |||| Sbjct: 59419 gaaaacctcatcagcttcaagcagctcgtctactgacacaagtcgctcctcgacct 59474 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 344 gcctggcccatctggaggcttgtca 368 |||||||||||||| |||||||||| Sbjct: 58719 gcctggcccatctgcaggcttgtca 58743
>gb|AF193845.1|AF193845 Solanum tuberosum branched-chain amino acid aminotransferase (BCAT1) mRNA, complete cds Length = 1683 Score = 89.7 bits (45), Expect = 1e-14 Identities = 84/97 (86%) Strand = Plus / Minus Query: 455 acaggagatactacaacggcggtccctgtgcagaacacttcatcagcatcaagcaactca 514 ||||||||||| || || || || |||||||||||||||||||||||||||||||| || Sbjct: 1227 acaggagatacaaccactgcagttcctgtgcagaacacttcatcagcatcaagcaattcg 1168 Query: 515 tccacggacacgagccgctcctcaacctggaagcctt 551 ||||| ||||| |||| || ||||||||||| |||| Sbjct: 1167 tccacagacacttgccgttcttcaacctggaaccctt 1131
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Minus Query: 539 acctggaagcctttactcagagcaacatcaattatacttttccttgtgatgcccggtagt 598 |||||||| || || ||||||||||||||||| |||||||||||||||||||| || | | Sbjct: 21004508 acctggaaacccttgctcagagcaacatcaatgatacttttccttgtgatgcctggcaat 21004449 Query: 599 attgttcctttta 611 ||||||||||||| Sbjct: 21004448 attgttcctttta 21004436 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Minus Query: 427 ccttttcccttgatatgtgatactacctacaggagatactacaacggcggtccctgtgca 486 ||||||||||||||| || |||||||| |||||||| ||||| || || || |||||||| Sbjct: 21005032 ccttttcccttgataggtaatactacccacaggagacactacgacagcagttcctgtgca 21004973 Query: 487 gaacacttcatcagcatcaagcaactcatccacggacacgagccgctcctcaacct 542 ||| || |||||||| ||||||| ||| || || ||||| || |||||||| |||| Sbjct: 21004972 gaaaacctcatcagcttcaagcagctcgtctactgacacaagtcgctcctcgacct 21004917 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 344 gcctggcccatctggaggcttgtca 368 |||||||||||||| |||||||||| Sbjct: 21005672 gcctggcccatctgcaggcttgtca 21005648
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Minus Query: 539 acctggaagcctttactcagagcaacatcaattatacttttccttgtgatgcccggtagt 598 |||||||| || || ||||||||||||||||| |||||||||||||||||||| || | | Sbjct: 21015772 acctggaaacccttgctcagagcaacatcaatgatacttttccttgtgatgcctggcaat 21015713 Query: 599 attgttcctttta 611 ||||||||||||| Sbjct: 21015712 attgttcctttta 21015700 Score = 87.7 bits (44), Expect = 4e-14 Identities = 98/116 (84%) Strand = Plus / Minus Query: 427 ccttttcccttgatatgtgatactacctacaggagatactacaacggcggtccctgtgca 486 ||||||||||||||| || |||||||| |||||||| ||||| || || || |||||||| Sbjct: 21016296 ccttttcccttgataggtaatactacccacaggagacactacgacagcagttcctgtgca 21016237 Query: 487 gaacacttcatcagcatcaagcaactcatccacggacacgagccgctcctcaacct 542 ||| || |||||||| ||||||| ||| || || ||||| || |||||||| |||| Sbjct: 21016236 gaaaacctcatcagcttcaagcagctcgtctactgacacaagtcgctcctcgacct 21016181 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 344 gcctggcccatctggaggcttgtca 368 |||||||||||||| |||||||||| Sbjct: 21016936 gcctggcccatctgcaggcttgtca 21016912
>gb|AF193846.1|AF193846 Solanum tuberosum branched-chain amino acid aminotransferase (BCAT2) mRNA, complete cds Length = 1700 Score = 73.8 bits (37), Expect = 6e-10 Identities = 103/125 (82%) Strand = Plus / Minus Query: 427 ccttttcccttgatatgtgatactacctacaggagatactacaacggcggtccctgtgca 486 |||| ||||||||| || || ||||| ||||||||||| || || || || || || || Sbjct: 1356 ccttctcccttgatgagtaatgctaccaacaggagatacaaccactgcagttcccgtaca 1297 Query: 487 gaacacttcatcagcatcaagcaactcatccacggacacgagccgctcctcaacctggaa 546 ||| |||||||||||||||||||| || ||||| ||||| | || |||||||||||||| Sbjct: 1296 gaaaacttcatcagcatcaagcaattcgtccacagacacctgtcgttcctcaacctggaa 1237 Query: 547 gcctt 551 |||| Sbjct: 1236 tcctt 1232
>gb|BT009368.1| Triticum aestivum clone wlm96.pk027.n2:fis, full insert mRNA sequence Length = 1514 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 461 gatactacaacggcggtccctgtgcagaacacttcatcagcatcaagcaactcatc 516 |||| ||||||||| |||||||| ||||| ||||||||||| |||||||||||||| Sbjct: 1044 gatagtacaacggcagtccctgtacagaagacttcatcagcgtcaagcaactcatc 989
>dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181, complete sequence Length = 185320 Score = 69.9 bits (35), Expect = 9e-09 Identities = 56/63 (88%) Strand = Plus / Plus Query: 482 gtgcagaacacttcatcagcatcaagcaactcatccacggacacgagccgctcctcaacc 541 |||||||| || ||||||||||| ||||| |||||||| ||||| || |||||||||||| Sbjct: 11296 gtgcagaaaacctcatcagcatctagcaattcatccactgacactagtcgctcctcaacc 11355 Query: 542 tgg 544 ||| Sbjct: 11356 tgg 11358 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Plus Query: 561 caacatcaattatacttttccttgtgatgcccggtagtattgttccttt 609 ||||||||||||||||||| | || ||||| ||||| || |||||||| Sbjct: 12094 caacatcaattatactttttcgagtaatgccaggtaggatagttccttt 12142
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 482 gtgcagaacacttcatcagcatcaagcaactcatccacggacacgagccgctcctcaacc 541 |||||||| ||||||||||| ||||| | ||||||||| ||||| || |||||||||||| Sbjct: 354674 gtgcagaaaacttcatcagcttcaagaagctcatccactgacacaaggcgctcctcaacc 354733 Query: 542 t 542 | Sbjct: 354734 t 354734 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 544 gaagcctttactcagagcaacatcaattatacttttccttgtgatgcccggtagtattgt 603 ||||||||| ||| ||||||| |||| |||||||||||||| || || || ||||| || Sbjct: 355039 gaagccttttctctgagcaacttcaagaatacttttccttgttataccaggcagtatggt 355098 Query: 604 tcctttta 611 |||||||| Sbjct: 355099 tcctttta 355106 Score = 44.1 bits (22), Expect = 0.53 Identities = 55/66 (83%) Strand = Plus / Plus Query: 350 cccatctggaggcttgtcagcgaggtgtacaattgctgagacacagcgccgactccttgc 409 ||||||||||||||||| || || || |||| |||||| |||| |||| |||||||| Sbjct: 353909 cccatctggaggcttgtaagtgaagtatacagctgctgacacaccacgcccactccttgg 353968 Query: 410 ttgcca 415 |||||| Sbjct: 353969 ttgcca 353974
>gb|AC107224.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0009C08, complete sequence Length = 137033 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 482 gtgcagaacacttcatcagcatcaagcaactcatccacggacacgagccgctcctcaacc 541 |||||||| ||||||||||| ||||| | ||||||||| ||||| || |||||||||||| Sbjct: 82202 gtgcagaaaacttcatcagcttcaagaagctcatccactgacacaaggcgctcctcaacc 82261 Query: 542 t 542 | Sbjct: 82262 t 82262 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 544 gaagcctttactcagagcaacatcaattatacttttccttgtgatgcccggtagtattgt 603 ||||||||| ||| ||||||| |||| |||||||||||||| || || || ||||| || Sbjct: 82567 gaagccttttctctgagcaacttcaagaatacttttccttgttataccaggcagtatggt 82626 Query: 604 tcctttta 611 |||||||| Sbjct: 82627 tcctttta 82634 Score = 44.1 bits (22), Expect = 0.53 Identities = 55/66 (83%) Strand = Plus / Plus Query: 350 cccatctggaggcttgtcagcgaggtgtacaattgctgagacacagcgccgactccttgc 409 ||||||||||||||||| || || || |||| |||||| |||| |||| |||||||| Sbjct: 81437 cccatctggaggcttgtaagtgaagtatacagctgctgacacaccacgcccactccttgg 81496 Query: 410 ttgcca 415 |||||| Sbjct: 81497 ttgcca 81502
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 482 gtgcagaacacttcatcagcatcaagcaactcatccacggacacgagccgctcctcaacc 541 |||||||| ||||||||||| ||||| | ||||||||| ||||| || |||||||||||| Sbjct: 354672 gtgcagaaaacttcatcagcttcaagaagctcatccactgacacaaggcgctcctcaacc 354731 Query: 542 t 542 | Sbjct: 354732 t 354732 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 544 gaagcctttactcagagcaacatcaattatacttttccttgtgatgcccggtagtattgt 603 ||||||||| ||| ||||||| |||| |||||||||||||| || || || ||||| || Sbjct: 355037 gaagccttttctctgagcaacttcaagaatacttttccttgttataccaggcagtatggt 355096 Query: 604 tcctttta 611 |||||||| Sbjct: 355097 tcctttta 355104 Score = 44.1 bits (22), Expect = 0.53 Identities = 55/66 (83%) Strand = Plus / Plus Query: 350 cccatctggaggcttgtcagcgaggtgtacaattgctgagacacagcgccgactccttgc 409 ||||||||||||||||| || || || |||| |||||| |||| |||| |||||||| Sbjct: 353907 cccatctggaggcttgtaagtgaagtatacagctgctgacacaccacgcccactccttgg 353966 Query: 410 ttgcca 415 |||||| Sbjct: 353967 ttgcca 353972
>dbj|D64052.1| Nicotiana tabacum mRNA for cytochrome P450 like_TBP, complete cds Length = 2010 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 491 acttcatcagcatcaagcaactcatccacggacacgagccgctcctcaacct 542 |||||||||||||||||||| || ||||||||||| || || |||||||||| Sbjct: 1282 acttcatcagcatcaagcaattcgtccacggacaccagtcgttcctcaacct 1333
>emb|AJ236562.1|OEU236562 Olea europaea RAPD genomic sequence, clone 127f Length = 1724 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 491 acttcatcagcatcaagcaactcatc 516 |||||||||||||||||||||||||| Sbjct: 484 acttcatcagcatcaagcaactcatc 509
>ref|XM_473479.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1233 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Minus Query: 485 cagaacacttcatcagcatcaagcaactcatc 516 ||||| ||||||||||| |||||||||||||| Sbjct: 1058 cagaaaacttcatcagcgtcaagcaactcatc 1027
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Plus Query: 485 cagaacacttcatcagcatcaagcaactcatc 516 ||||| ||||||||||| |||||||||||||| Sbjct: 8042 cagaaaacttcatcagcgtcaagcaactcatc 8073
>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17, complete sequence Length = 167269 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Plus Query: 485 cagaacacttcatcagcatcaagcaactcatc 516 ||||| ||||||||||| |||||||||||||| Sbjct: 163670 cagaaaacttcatcagcgtcaagcaactcatc 163701
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Plus Query: 485 cagaacacttcatcagcatcaagcaactcatc 516 ||||| ||||||||||| |||||||||||||| Sbjct: 28000817 cagaaaacttcatcagcgtcaagcaactcatc 28000848
>dbj|AK106376.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D03, full insert sequence Length = 1674 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Minus Query: 485 cagaacacttcatcagcatcaagcaactcatc 516 ||||| ||||||||||| |||||||||||||| Sbjct: 1254 cagaaaacttcatcagcgtcaagcaactcatc 1223
>dbj|AK062472.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-E12, full insert sequence Length = 656 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Minus Query: 485 cagaacacttcatcagcatcaagcaactcatc 516 ||||| ||||||||||| |||||||||||||| Sbjct: 102 cagaaaacttcatcagcgtcaagcaactcatc 71
>gb|AC159872.12| Medicago truncatula clone mth2-29k12, complete sequence Length = 117971 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 479 cctgtgcagaacacttcatcagc 501 ||||||||||||||||||||||| Sbjct: 94725 cctgtgcagaacacttcatcagc 94703
>ref|NM_120969.2| Arabidopsis thaliana ANAC082; transcription factor AT5G09330 (ANAC082) mRNA, complete cds Length = 1728 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 29 aagaaacaaaggtgcttgctcc 50 |||||||||||||||||||||| Sbjct: 1560 aagaaacaaaggtgcttgctcc 1539
>gb|BT020263.1| Arabidopsis thaliana At5g09330 gene, complete cds Length = 2026 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 29 aagaaacaaaggtgcttgctcc 50 |||||||||||||||||||||| Sbjct: 1950 aagaaacaaaggtgcttgctcc 1929
>ref|NM_025114.2| Homo sapiens centrosomal protein 290kDa (CEP290), mRNA Length = 7951 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 24 ctccaaagaaacaaaggtgctt 45 |||||||||||||||||||||| Sbjct: 1518 ctccaaagaaacaaaggtgctt 1539
>gb|AY590151.1| Homo sapiens prostate cancer antigen T21 mRNA, complete cds Length = 2797 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 24 ctccaaagaaacaaaggtgctt 45 |||||||||||||||||||||| Sbjct: 347 ctccaaagaaacaaaggtgctt 368
>gb|DQ109808.1| Homo sapiens nephrocystin-6 (CEP290) mRNA, complete cds Length = 7951 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 24 ctccaaagaaacaaaggtgctt 45 |||||||||||||||||||||| Sbjct: 1518 ctccaaagaaacaaaggtgctt 1539
>gb|BC043398.1| Homo sapiens centrosomal protein 290kDa, mRNA (cDNA clone IMAGE:6013656), containing frame-shift errors Length = 2846 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 24 ctccaaagaaacaaaggtgctt 45 |||||||||||||||||||||| Sbjct: 1272 ctccaaagaaacaaaggtgctt 1293
>emb|AL391712.1|ATT5E8 Arabidopsis thaliana DNA chromosome 5, BAC clone T5E8 (ESSA project) Length = 103534 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 aagaaacaaaggtgcttgctcc 50 |||||||||||||||||||||| Sbjct: 33318 aagaaacaaaggtgcttgctcc 33339
>gb|DQ301697.1| Ceratobasidium sp. AG-B(o) RNA polymerase II second largest subunit (RPB2) gene, partial sequence Length = 650 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 492 cttcatcagcatcaagcaactc 513 |||||||||||||||||||||| Sbjct: 260 cttcatcagcatcaagcaactc 281
>gb|DQ301695.1| Ceratobasidium sp. AG-A RNA polymerase II second largest subunit (RPB2) gene, partial sequence Length = 613 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 492 cttcatcagcatcaagcaactc 513 |||||||||||||||||||||| Sbjct: 451 cttcatcagcatcaagcaactc 430
>dbj|AK023677.1| Homo sapiens cDNA FLJ13615 fis, clone PLACE1010896, weakly similar to NUF1 PROTEIN Length = 2719 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 24 ctccaaagaaacaaaggtgctt 45 |||||||||||||||||||||| Sbjct: 1518 ctccaaagaaacaaaggtgctt 1539
>tpg|BK005587.1| TPA: TPA_exp: Homo sapiens centrosome protein Cep290 mRNA, complete cds Length = 7951 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 24 ctccaaagaaacaaaggtgctt 45 |||||||||||||||||||||| Sbjct: 1518 ctccaaagaaacaaaggtgctt 1539
>emb|BX830958.1|CNS0A295 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS41ZG04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1940 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 29 aagaaacaaaggtgcttgctcc 50 |||||||||||||||||||||| Sbjct: 1833 aagaaacaaaggtgcttgctcc 1812
>gb|AF317887.1|AF317887 Homo sapiens monoclonal antibody 3H11 antigen mRNA, complete cds Length = 2156 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 24 ctccaaagaaacaaaggtgctt 45 |||||||||||||||||||||| Sbjct: 1086 ctccaaagaaacaaaggtgctt 1107
>dbj|AK025632.1| Homo sapiens cDNA: FLJ21979 fis, clone HEP06065 Length = 2203 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 24 ctccaaagaaacaaaggtgctt 45 |||||||||||||||||||||| Sbjct: 121 ctccaaagaaacaaaggtgctt 142
>gb|AC163722.6| Mus musculus BAC clone RP23-447O11 from chromosome 19, complete sequence Length = 178562 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 563 acatcaattatacttttcctt 583 ||||||||||||||||||||| Sbjct: 88334 acatcaattatacttttcctt 88314
>gb|AC024608.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-333I24, complete sequence Length = 215829 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 tccagcagtccaatgtcctcc 27 ||||||||||||||||||||| Sbjct: 34084 tccagcagtccaatgtcctcc 34064
>gb|AC074359.2| Mus musculus strain C57BL6/J chromosome 5 clone RP23-289J24, complete sequence Length = 106041 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 tccagcagtccaatgtcctcc 27 ||||||||||||||||||||| Sbjct: 103005 tccagcagtccaatgtcctcc 102985
>emb|AL954189.5| Mouse DNA sequence from clone RP23-405M24 on chromosome 4 Contains the 5' end of the Ptprd gene for receptor type protein tyrosine phosphatase D, complete sequence Length = 172364 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 agatgttttaatcaggctgag 259 ||||||||||||||||||||| Sbjct: 120708 agatgttttaatcaggctgag 120688
>dbj|AK082603.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230068I06 product:unclassifiable, full insert sequence Length = 1965 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 tccagcagtccaatgtcctcc 27 ||||||||||||||||||||| Sbjct: 1276 tccagcagtccaatgtcctcc 1256
>emb|AL953842.8| Zebrafish DNA sequence from clone DKEY-33I11, complete sequence Length = 225654 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 acacaagatgttttaatcagg 254 ||||||||||||||||||||| Sbjct: 115068 acacaagatgttttaatcagg 115048
>ref|NM_125975.2| Arabidopsis thaliana branched-chain-amino-acid transaminase/ catalytic AT5G65780 mRNA, complete cds Length = 2275 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 458 ggagatactacaacggcggtccctgtgcagaa 489 ||||||| ||||||||||| ||||||||||| Sbjct: 1958 ggagataaaacaacggcggttcctgtgcagaa 1927
>ref|XM_509254.1| PREDICTED: Pan troglodytes similar to prostate cancer antigen T21 (LOC452113), mRNA Length = 4542 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 ctccaaagaaacaaaggtgc 43 |||||||||||||||||||| Sbjct: 1537 ctccaaagaaacaaaggtgc 1556
>gb|AC132833.10| Mus musculus chromosome 15, clone RP24-498G7, complete sequence Length = 154206 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 caaagattgttggctaattc 313 |||||||||||||||||||| Sbjct: 8286 caaagattgttggctaattc 8267
>gb|AC145923.3| Pan troglodytes BAC clone RP43-10M24 from 7, complete sequence Length = 181799 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 actacaaaactcaagataca 236 |||||||||||||||||||| Sbjct: 41845 actacaaaactcaagataca 41826
>gb|AY277790.1| Monocercomonas sp. ATCC 50210 beta-tubulin 1 gene, partial cds Length = 1141 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 tgcagaacacttcatcagca 502 |||||||||||||||||||| Sbjct: 560 tgcagaacacttcatcagca 541
>gb|AY277780.1| Hypotrichomonas acosta strain ATCC 30069 beta-tubulin 3 gene, partial cds Length = 1141 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 tgcagaacacttcatcagca 502 |||||||||||||||||||| Sbjct: 560 tgcagaacacttcatcagca 541
>gb|AC124404.4| Mus musculus BAC clone RP24-371M10 from chromosome 12, complete sequence Length = 150375 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tatggcaagtaaaagtattt 71 |||||||||||||||||||| Sbjct: 30487 tatggcaagtaaaagtattt 30468
>gb|AC122913.4| Mus musculus BAC clone RP23-25J21 from 3, complete sequence Length = 205216 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 568 aattatacttttccttgtga 587 |||||||||||||||||||| Sbjct: 151103 aattatacttttccttgtga 151122
>ref|XM_661014.1| Cryptosporidium hominis TU502 hexose transporter (Chro.30458) partial mRNA Length = 846 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 aatgtcctccaaagaaacaa 37 |||||||||||||||||||| Sbjct: 406 aatgtcctccaaagaaacaa 387
>gb|AC158565.2| Mus musculus chromosome 15, clone RP24-354O12, complete sequence Length = 150125 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 caaagattgttggctaattc 313 |||||||||||||||||||| Sbjct: 51988 caaagattgttggctaattc 52007
>emb|AL021684.1|ATF6H11 Arabidopsis thaliana DNA chromosome 5, BAC clone F6H11 (ESSAII project) Length = 118086 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 458 ggagatactacaacggcggtccctgtgcagaa 489 ||||||| ||||||||||| ||||||||||| Sbjct: 49078 ggagataaaacaacggcggttcctgtgcagaa 49109
>emb|AJ293804.1|ATH293804 Arabidopsis thaliana mRNA for branched-chain amino acid transaminase 5 (bcat5 gene) Length = 1973 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 458 ggagatactacaacggcggtccctgtgcagaa 489 ||||||| ||||||||||| ||||||||||| Sbjct: 1670 ggagataaaacaacggcggttcctgtgcagaa 1639
>gb|AC163296.2| Mus musculus BAC clone RP23-135F1 from chromosome 12, complete sequence Length = 226483 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tatggcaagtaaaagtattt 71 |||||||||||||||||||| Sbjct: 149 tatggcaagtaaaagtattt 130
>gb|AC166092.4| Glycine max clone gmw1-93l19, complete sequence Length = 51037 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 aactcaagatacacaagatg 243 |||||||||||||||||||| Sbjct: 48828 aactcaagatacacaagatg 48809
>gb|AC113209.4| Homo sapiens chromosome 8, clone RP11-1002K11, complete sequence Length = 193991 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 atgttttaatcaggctgaga 260 |||||||||||||||||||| Sbjct: 111228 atgttttaatcaggctgaga 111209
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 tccaatgtcctccaaagaaa 34 |||||||||||||||||||| Sbjct: 153727 tccaatgtcctccaaagaaa 153746
>ref|XM_626951.1| Cryptosporidium parvum Iowa II putative sugar transporter with 12 transmembrane domains (cgd3_4070), partial mRNA Length = 1467 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 aatgtcctccaaagaaacaa 37 |||||||||||||||||||| Sbjct: 1027 aatgtcctccaaagaaacaa 1008
>gb|AC097378.2| Homo sapiens BAC clone RP11-123G5 from 4, complete sequence Length = 157417 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 tccaaagaaacaaaggtgct 44 |||||||||||||||||||| Sbjct: 133667 tccaaagaaacaaaggtgct 133686
>emb|BX831246.1|CNS09ZFV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS71ZC11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1398 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 458 ggagatactacaacggcggtccctgtgcagaa 489 ||||||| ||||||||||| ||||||||||| Sbjct: 1118 ggagataaaacaacggcggttcctgtgcagaa 1087
>emb|BX831049.1|CNS09ZFT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS53ZC10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1320 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 458 ggagatactacaacggcggtccctgtgcagaa 489 ||||||| ||||||||||| ||||||||||| Sbjct: 1118 ggagataaaacaacggcggttcctgtgcagaa 1087
>gb|AC151737.3| Pan troglodytes BAC clone RP43-70B8 from chromosome 7, complete sequence Length = 212458 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 actacaaaactcaagataca 236 |||||||||||||||||||| Sbjct: 108998 actacaaaactcaagataca 109017
>gb|AF274704.1| Pseudomonas diterpeniphila coenzyme A ligase (tdtL) and P450 monooxygenase (tdtD) genes, complete cds Length = 9180 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 gtgatcacacaggcttcggt 114 |||||||||||||||||||| Sbjct: 758 gtgatcacacaggcttcggt 777
>emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in linkage group 19, complete sequence Length = 180994 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 actacaaaactcaagatacacaag 240 |||||||||||||| ||||||||| Sbjct: 49501 actacaaaactcaaaatacacaag 49524
>dbj|AB010075.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPA24 Length = 84440 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 458 ggagatactacaacggcggtccctgtgcagaa 489 ||||||| ||||||||||| ||||||||||| Sbjct: 70730 ggagataaaacaacggcggttcctgtgcagaa 70699
>gb|AC133175.4| Mus musculus BAC clone RP24-62B8 from chromosome 10, complete sequence Length = 180058 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 cacattgctgactagtgatc 100 |||||||||||||||||||| Sbjct: 32233 cacattgctgactagtgatc 32214
>gb|AC153654.4| Mus musculus BAC clone RP23-457N11 from chromosome 12, complete sequence Length = 193547 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tatggcaagtaaaagtattt 71 |||||||||||||||||||| Sbjct: 119725 tatggcaagtaaaagtattt 119706 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,722,168 Number of Sequences: 3902068 Number of extensions: 4722168 Number of successful extensions: 86908 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86629 Number of HSP's gapped (non-prelim): 278 length of query: 611 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 588 effective length of database: 17,143,297,704 effective search space: 10080259049952 effective search space used: 10080259049952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)