>RL28_DROME (Q9VZS5) 60S ribosomal protein L28|
          Length = 144

 Score = 77.4 bits (189), Expect = 3e-14
 Identities = 50/111 (45%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
 Frame = -3

Query: 511 KVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKE-MTVVLSTTKSKKQNKPAAFTHK 335
           K  FS EPNNL +V SY+YSG+ +KKT+ V PAA+K+  T VL   K K   +PA  T +
Sbjct: 26  KKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLK--KGKYAQRPAKNTVR 83

Query: 334 TVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKSGVKK 182
              +   R+  K +KN +  + YR DLT+ AL R SAV RS + A    KK
Sbjct: 84  VDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKK 134

>RL28_MOUSE (P41105) 60S ribosomal protein L28|
          Length = 136

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 40/100 (40%), Positives = 61/100 (61%)
 Frame = -3

Query: 511 KVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKT 332
           K  +S EPNNL   +S++Y+GL ++KTV V+PAA+ +  VV+   +S  Q KPA    +T
Sbjct: 21  KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRS-GQRKPATSYVRT 79

Query: 331 VMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 212
            + K  R    ++++ +  N YRPDL   A+ R SA+ RS
Sbjct: 80  TINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS 119

>RL28_HUMAN (P46779) 60S ribosomal protein L28|
          Length = 136

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 40/100 (40%), Positives = 61/100 (61%)
 Frame = -3

Query: 511 KVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKT 332
           K  +S EPNNL   +S++Y+GL ++KTV V+PAA+ +  VV+   +S  Q KPA    +T
Sbjct: 21  KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRS-GQRKPATSYVRT 79

Query: 331 VMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 212
            + K  R    ++++ +  N YRPDL   A+ R SA+ RS
Sbjct: 80  TINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS 119

>RL28_SPOFR (Q962T2) 60S ribosomal protein L28|
          Length = 139

 Score = 72.4 bits (176), Expect = 9e-13
 Identities = 47/111 (42%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
 Frame = -3

Query: 511 KVQFSKEPNNLYNVHSYKYSGLANKKTV-TVQPAAEKEMTVVLSTTKSKKQNKPAAFTHK 335
           K  FSKEPNN+ N++SY+Y+GL  KK V  V+    K  TVV    K+K  NKPA    K
Sbjct: 24  KKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVYK--KAKATNKPA----K 77

Query: 334 TVMRKEFRKMAK----AVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKS 194
             +R++F+  A+     VK  +  N+YR DL+K  L R SA+ RS +  K+
Sbjct: 78  NAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRSQRPIKA 128

>RL28_RAT (P17702) 60S ribosomal protein L28|
          Length = 136

 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 37/100 (37%), Positives = 58/100 (58%)
 Frame = -3

Query: 511 KVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKT 332
           K  +S EPNNL   +S++Y+GL ++KTV V+   + +  VV+   +S  Q KPA    +T
Sbjct: 21  KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMKRRSG-QRKPATSYVRT 79

Query: 331 VMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 212
            + K  R    ++++ +  N YRPDL   A+ R SA+ RS
Sbjct: 80  TINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS 119

>YFF6_SCHPO (O14069) Probable 60S ribosomal protein C1687.06c|
          Length = 134

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
 Frame = -3

Query: 508 VQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKTV 329
           +QF++EP N+   ++ ++SGL N K V VQ A      V+++ T  K   KPA    K V
Sbjct: 28  IQFNREPVNVSGKNAQRFSGLCNDKAVGVQ-ANSPRGVVLITKTNPKNAQKPAKLFRKDV 86

Query: 328 M-RKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKS 194
           +     RK  K++  ++    YR DL K ++AR SA+  S +  K+
Sbjct: 87  IANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKKT 132

>RL28_DICDI (Q9GS21) 60S ribosomal protein L28|
          Length = 132

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
 Frame = -3

Query: 499 SKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKTVMRK 320
           S EP NL N +S KYSGLA + T+ V     K   VV+S+   KK   PA     T    
Sbjct: 26  SAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK---VVVSSKIVKKAAFPAQSKKTTTFST 82

Query: 319 -EFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKSGVKKKNRQ 170
              RK A+ VK   +   Y P+L   AL RL  V  +L+ AK    +K ++
Sbjct: 83  VNTRKTARFVKTLATQ--YAPELRAAALGRLHRVQSALRSAKKAAARKAKK 131

>RL28_CAEEL (Q21930) 60S ribosomal protein L28|
          Length = 125

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 38/108 (35%), Positives = 56/108 (51%)
 Frame = -3

Query: 505 QFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKTVM 326
           +FS E  NL  V+S KYSGLANK  + V  AA+     V+ +TK++K     A T  T+ 
Sbjct: 25  RFSTEKFNLKKVNSPKYSGLANKHAIDVSAAAKG----VVVSTKNEKGRPAKAVTTSTLS 80

Query: 325 RKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKSGVKK 182
           +     + +  KN   + +      K A  R +A+ RS QV K+ V+K
Sbjct: 81  KTPVASVRRLAKNAGFNKF-----NKLAQRRAAAIVRS-QVKKAKVQK 122

>H1A_XENLA (P06892) Histone H1A|
          Length = 209

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 24/89 (26%), Positives = 37/89 (41%)
 Frame = -3

Query: 445 ANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYY 266
           A KK   +   A+K       T KS K+ K  +   K+   K+ +K AKA K+       
Sbjct: 122 AAKKKAPLAAEAKKPAAAAKKTAKSPKKPKKVSAAAKSP--KKLKKPAKAAKSPAKKTAV 179

Query: 265 RPDLTKPALARLSAVYRSLQVAKSGVKKK 179
           +P +   + A+  A    +  AK    KK
Sbjct: 180 KPKVAAKSPAKAKAAKPKVAKAKKAAPKK 208

>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von|
            Willebrand antigen II]
          Length = 2813

 Score = 32.7 bits (73), Expect = 0.76
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -2

Query: 344  HPQDCHAQGVPQDGQGCQEPGXXXXXXXXXXXACSCKTERSLPQPPGCQVWCQE 183
            H Q+CH  GV    + CQEPG           + +       P+PP    +C +
Sbjct: 1221 HCQNCHCDGVNLTCEACQEPGGLVAPPTDAPVSSTTPYVEDTPEPPLHNFYCSK 1274

>CSTN2_RAT (Q8VDA1) Calsyntenin-2 precursor|
          Length = 965

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = +2

Query: 17  GTDIEPSENTCAGIQAHHSSYSTSILLEQI*KVGNINQRIHKIS 148
           G DI   E+   GI+ +H + S SIL+ +   +GNINQ + K+S
Sbjct: 546 GLDINSLESLGRGIK-YHFNPSQSILVMEGDDIGNINQALQKVS 588

>SPEA_PROMA (Q7VEG4) Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ADC)|
          Length = 648

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
 Frame = -3

Query: 496 KEPNNLYNVHSY--KYSGLANKKTVTVQPAAEK----EMTVVLSTTKSKKQNKPAAFTHK 335
           K+  +LY +  +  +Y  + +   VTV P  ++    E+T +L   K +  N P      
Sbjct: 16  KDSCSLYGLDLWGEEYFSINDSGNVTVSPQGKEGNSLELTHLLEELKGRNLNTPLLLRFD 75

Query: 334 TVMRKEFRKMAKAVKNQVSDNYYRPD 257
            ++    +K+ +A +N ++   Y  D
Sbjct: 76  DILEDRLKKLHQAFENAINQYGYNND 101

>PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV)|
          Length = 513

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 440 QEDCDGAACC*EGDDCGPLHNQVKEAEQACGLHPQDCHAQGVPQDGQGCQE 288
           ++DC G  CC EG  C  L     + ++ C  +P D   +G    G  C+E
Sbjct: 86  KKDCGGTGCCKEGQYCTKL-----DGKEQCVYYPDD---KGPQCGGSFCRE 128

>FINC_PLEWA (Q91289) Fibronectin (FN) (Fragment)|
          Length = 1328

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -3

Query: 424 VQPAAEKEMTVVLSTTK--SKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYYRPDLT 251
           ++P AE  +TV   T +  S   +KP   THKTV+ K  +     V++      + P  T
Sbjct: 445 LKPGAEYIITVYAVTGRGDSPASSKPVTVTHKTVVDKPTQLQVTDVQDHSIQVRWMPSST 504

Query: 250 KPALARLSAVYRSLQVAKSGV 188
            P        YR   V KSGV
Sbjct: 505 -PVTG-----YRVTSVPKSGV 519

>RL23A_TRYBB (P41165) 60S ribosomal protein L23a (L25)|
          Length = 164

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
 Frame = -3

Query: 388 LSTTKSKK---QNKPAAF-----THKTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALAR 233
           L+T K+ K   +N    F      +KT ++K  RK+ + VK    +   RPD  K A  R
Sbjct: 89  LTTDKAMKKIEENNTLTFIVDSRANKTEIKKAIRKLYQ-VKTVKVNTLIRPDGLKKAYIR 147

Query: 232 LSAVYRSLQVA 200
           LSA Y +L  A
Sbjct: 148 LSASYDALDTA 158

>CSTN2_MOUSE (Q9ER65) Calsyntenin-2 precursor|
          Length = 966

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +2

Query: 17  GTDIEPSENTCAGIQAHHSSYSTSILLEQI*KVGNINQRIHKIS 148
           G DI   E+   GI+ +H + S SIL+ +   +GNIN+ + K+S
Sbjct: 546 GLDINSLESLGRGIK-YHFNPSQSILVMEGDDIGNINRALQKVS 588

>H1C_CHITE (P40277) Histone H1C|
          Length = 221

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
 Frame = -3

Query: 418 PAAEKEMTVVLSTTKSKKQN--KPAAF----THKTVMRKEFRKMAKAVKNQVSDNYYRPD 257
           PAA K+  VV  T K  K+   KP+        KT+ +K     A  +K  V+    +P 
Sbjct: 111 PAAAKKEKVVKKTEKKPKKAAAKPSKAGEKKVKKTIAKKPKAATATKIKKPVAKTTKKPA 170

Query: 256 LTKPALARLSAVYRSLQVAKSGVKKK 179
             KPA  + +   ++    K+  K K
Sbjct: 171 AAKPAAKKAAPKPKAAPKPKAAPKPK 196

>H13_GLYBA (P40265) Histone H1-III|
          Length = 228

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
 Frame = -3

Query: 418 PAAEKEMTVVLSTTKSKKQNKPAAFT--------HKTVMRKEFRKMAKAVKNQVSDNYYR 263
           PAA K+  V  +  K+  + KP A           K++ +K     A  VK  V+ +  +
Sbjct: 112 PAAAKKEKVAKTPKKAAGEKKPQAAAKPKKALEKKKSIAKKPKAATATKVKKPVAKSTKK 171

Query: 262 PDLTKPALARLSAVYRSLQVAKSGVKKK 179
           P   KPA  + +   ++    K+  K K
Sbjct: 172 PAAVKPAAKKAAPKPKAAPKPKAATKPK 199

>CSTN2_HUMAN (Q9H4D0) Calsyntenin-2 precursor|
          Length = 955

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +2

Query: 17  GTDIEPSENTCAGIQAHHSSYSTSILLEQI*KVGNINQRIHKIS 148
           G DI   E+   GI+ +H + S SIL+ +   +GNIN+ + K+S
Sbjct: 544 GLDINSLESLGQGIK-YHFNPSQSILVMEGDDIGNINRALQKVS 586


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,060,323
Number of Sequences: 219361
Number of extensions: 1184391
Number of successful extensions: 3404
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3395
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)