| Clone Name | rbags22j15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197435.1| Oryza sativa (japonica cultivar-group) putative phospholipase (OSJNBa0096G08.23), mRNA Length = 3512 Score = 176 bits (89), Expect = 4e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 364 aattcatatcgtgaggttttcttggatggccgtgaaggagccacagatgttcccgcccat 423 ||||||||| |||||||||||||||||||| ||| || ||||||||||| || ||||| Sbjct: 3144 aattcatattgtgaggttttcttggatggctcggaatgatccacagatgttaccacccat 3085 Query: 424 gtctgggaatgtcgcacatcctggcaagggtttcaccttgcccttacggtcaacacttac 483 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3084 gtctgggaatgacgtacatcctggcaagggtttcaccttgcccttacggtcaacacttac 3025 Query: 484 agggtactt 492 ||||||||| Sbjct: 3024 agggtactt 3016
>gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0096G08 map E1363S, complete sequence Length = 140681 Score = 176 bits (89), Expect = 4e-41 Identities = 119/129 (92%) Strand = Plus / Plus Query: 364 aattcatatcgtgaggttttcttggatggccgtgaaggagccacagatgttcccgcccat 423 ||||||||| |||||||||||||||||||| ||| || ||||||||||| || ||||| Sbjct: 121812 aattcatattgtgaggttttcttggatggctcggaatgatccacagatgttaccacccat 121871 Query: 424 gtctgggaatgtcgcacatcctggcaagggtttcaccttgcccttacggtcaacacttac 483 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121872 gtctgggaatgacgtacatcctggcaagggtttcaccttgcccttacggtcaacacttac 121931 Query: 484 agggtactt 492 ||||||||| Sbjct: 121932 agggtactt 121940
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 176 bits (89), Expect = 4e-41 Identities = 119/129 (92%) Strand = Plus / Plus Query: 364 aattcatatcgtgaggttttcttggatggccgtgaaggagccacagatgttcccgcccat 423 ||||||||| |||||||||||||||||||| ||| || ||||||||||| || ||||| Sbjct: 19860774 aattcatattgtgaggttttcttggatggctcggaatgatccacagatgttaccacccat 19860833 Query: 424 gtctgggaatgtcgcacatcctggcaagggtttcaccttgcccttacggtcaacacttac 483 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19860834 gtctgggaatgacgtacatcctggcaagggtttcaccttgcccttacggtcaacacttac 19860893 Query: 484 agggtactt 492 ||||||||| Sbjct: 19860894 agggtactt 19860902
>emb|AJ419630.1|OSA419630 Oryza sativa mRNA for phospholipase D (pld gene) Length = 3180 Score = 176 bits (89), Expect = 4e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 364 aattcatatcgtgaggttttcttggatggccgtgaaggagccacagatgttcccgcccat 423 ||||||||| |||||||||||||||||||| ||| || ||||||||||| || ||||| Sbjct: 3018 aattcatattgtgaggttttcttggatggctcggaatgatccacagatgttaccacccat 2959 Query: 424 gtctgggaatgtcgcacatcctggcaagggtttcaccttgcccttacggtcaacacttac 483 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2958 gtctgggaatgacgtacatcctggcaagggtttcaccttgcccttacggtcaacacttac 2899 Query: 484 agggtactt 492 ||||||||| Sbjct: 2898 agggtactt 2890
>dbj|AK121075.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061O15, full insert sequence Length = 3900 Score = 176 bits (89), Expect = 4e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 364 aattcatatcgtgaggttttcttggatggccgtgaaggagccacagatgttcccgcccat 423 ||||||||| |||||||||||||||||||| ||| || ||||||||||| || ||||| Sbjct: 3532 aattcatattgtgaggttttcttggatggctcggaatgatccacagatgttaccacccat 3473 Query: 424 gtctgggaatgtcgcacatcctggcaagggtttcaccttgcccttacggtcaacacttac 483 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3472 gtctgggaatgacgtacatcctggcaagggtttcaccttgcccttacggtcaacacttac 3413 Query: 484 agggtactt 492 ||||||||| Sbjct: 3412 agggtactt 3404
>dbj|AK110268.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-C04, full insert sequence Length = 2519 Score = 176 bits (89), Expect = 4e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 364 aattcatatcgtgaggttttcttggatggccgtgaaggagccacagatgttcccgcccat 423 ||||||||| |||||||||||||||||||| ||| || ||||||||||| || ||||| Sbjct: 346 aattcatattgtgaggttttcttggatggctcggaatgatccacagatgttaccacccat 287 Query: 424 gtctgggaatgtcgcacatcctggcaagggtttcaccttgcccttacggtcaacacttac 483 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 286 gtctgggaatgacgtacatcctggcaagggtttcaccttgcccttacggtcaacacttac 227 Query: 484 agggtactt 492 ||||||||| Sbjct: 226 agggtactt 218
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 176 bits (89), Expect = 4e-41 Identities = 119/129 (92%) Strand = Plus / Plus Query: 364 aattcatatcgtgaggttttcttggatggccgtgaaggagccacagatgttcccgcccat 423 ||||||||| |||||||||||||||||||| ||| || ||||||||||| || ||||| Sbjct: 19872050 aattcatattgtgaggttttcttggatggctcggaatgatccacagatgttaccacccat 19872109 Query: 424 gtctgggaatgtcgcacatcctggcaagggtttcaccttgcccttacggtcaacacttac 483 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19872110 gtctgggaatgacgtacatcctggcaagggtttcaccttgcccttacggtcaacacttac 19872169 Query: 484 agggtactt 492 ||||||||| Sbjct: 19872170 agggtactt 19872178
>dbj|AK073012.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150C03, full insert sequence Length = 3466 Score = 161 bits (81), Expect = 3e-36 Identities = 117/129 (90%) Strand = Plus / Minus Query: 364 aattcatatcgtgaggttttcttggatggccgtgaaggagccacagatgttcccgcccat 423 ||||||||| |||||||||||||||||||| ||| || ||||||||||| || ||||| Sbjct: 3450 aattcatattgtgaggttttcttggatggctcggaatgatccacagatgttaccacccat 3391 Query: 424 gtctgggaatgtcgcacatcctggcaagggtttcaccttgcccttacggtcaacacttac 483 ||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 3390 gtctgggaatgacgtacatcctggcaagggtttcaccttgcccttacggtccacacttac 3331 Query: 484 agggtactt 492 |||||||| Sbjct: 3330 cgggtactt 3322
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Plus Query: 366 ttcatatcgtgaggttttcttggatggccgtgaaggagccacagatgttcccgcccatgt 425 ||||||| ||||||||||||||||||| | ||| | ||| |||||||| ||||| | || Sbjct: 1007434 ttcatatggtgaggttttcttggatgggcaggaacgtgccgcagatgttgccgccgaggt 1007493 Query: 426 ctgggaatgtcgcacatcctggcaagggtttcaccttgcc 465 | ||||| | || ||||| |||| ||| ||||||||||| Sbjct: 1007494 ccgggaacgcggcgcatcccggcaggggcttcaccttgcc 1007533
>gb|AF411221.1| Oryza sativa phospholipase D beta 2 (PLDbeta2) gene, complete cds Length = 4572 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Minus Query: 366 ttcatatcgtgaggttttcttggatggccgtgaaggagccacagatgttcccgcccatgt 425 ||||||| ||||||||||||||||||| | ||| | ||| |||||||| ||||| | || Sbjct: 4110 ttcatatggtgaggttttcttggatgggcaggaacgtgccgcagatgttgccgccgaggt 4051 Query: 426 ctgggaatgtcgcacatcctggcaagggtttcaccttgcc 465 | ||||| | || ||||| |||| ||| ||||||||||| Sbjct: 4050 ccgggaacgcggcgcatcccggcaggggcttcaccttgcc 4011
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Plus Query: 366 ttcatatcgtgaggttttcttggatggccgtgaaggagccacagatgttcccgcccatgt 425 ||||||| ||||||||||||||||||| | ||| | ||| |||||||| ||||| | || Sbjct: 1007432 ttcatatggtgaggttttcttggatgggcaggaacgtgccgcagatgttgccgccgaggt 1007491 Query: 426 ctgggaatgtcgcacatcctggcaagggtttcaccttgcc 465 | ||||| | || ||||| |||| ||| ||||||||||| Sbjct: 1007492 ccgggaacgcggcgcatcccggcaggggcttcaccttgcc 1007531
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11, complete sequence Length = 126827 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Plus Query: 366 ttcatatcgtgaggttttcttggatggccgtgaaggagccacagatgttcccgcccatgt 425 ||||||| ||||||||||||||||||| | ||| | ||| |||||||| ||||| | || Sbjct: 27649 ttcatatggtgaggttttcttggatgggcaggaacgtgccgcagatgttgccgccgaggt 27708 Query: 426 ctgggaatgtcgcacatcctggcaagggtttcaccttgcc 465 | ||||| | || ||||| |||| ||| ||||||||||| Sbjct: 27709 ccgggaacgcggcgcatcccggcaggggcttcaccttgcc 27748
>dbj|AK069519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024E17, full insert sequence Length = 2671 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Minus Query: 366 ttcatatcgtgaggttttcttggatggccgtgaaggagccacagatgttcccgcccatgt 425 ||||||| ||||||||||||||||||| | ||| | ||| |||||||| ||||| | || Sbjct: 2512 ttcatatggtgaggttttcttggatgggcaggaacgtgccgcagatgttgccgccgaggt 2453 Query: 426 ctgggaatgtcgcacatcctggcaagggtttcaccttgcc 465 | ||||| | || ||||| |||| ||| ||||||||||| Sbjct: 2452 ccgggaacgcggcgcatcccggcaggggcttcaccttgcc 2413
>ref|NM_187560.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2715 Score = 54.0 bits (27), Expect = 4e-04 Identities = 81/99 (81%) Strand = Plus / Minus Query: 367 tcatatcgtgaggttttcttggatggccgtgaaggagccacagatgttcccgcccatgtc 426 |||||| ||||||||||||||||||| | ||| | ||| |||||||| ||||| | ||| Sbjct: 2715 tcatatggtgaggttttcttggatgggcaggaacgtgccgcagatgttgccgccgaggtc 2656 Query: 427 tgggaatgtcgcacatcctggcaagggtttcaccttgcc 465 ||||| | || ||||| |||| ||| ||||||||||| Sbjct: 2655 cgggaacgcggcgcatcccggcaggggcttcaccttgcc 2617
>emb|CR974447.12| Mouse DNA sequence from clone RP23-452G2 on chromosome 17, complete sequence Length = 139010 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 172 caacaaaaggcaggaatgactt 193 |||||||||||||||||||||| Sbjct: 111221 caacaaaaggcaggaatgactt 111242
>gb|AC132598.3| Mus musculus BAC clone RP24-196M16 from chromosome 17, complete sequence Length = 162858 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 172 caacaaaaggcaggaatgactt 193 |||||||||||||||||||||| Sbjct: 68320 caacaaaaggcaggaatgactt 68341
>gb|AC118471.2| Homo sapiens chromosome 1 clone RP11-377O11, complete sequence Length = 59063 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 315 gtccaggatatccaagaagtca 336 |||||||||||||||||||||| Sbjct: 10262 gtccaggatatccaagaagtca 10241
>gb|AC146704.8| Medicago truncatula clone mth2-107f11, complete sequence Length = 116591 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 gaaacttagtttcataaactt 37 ||||||||||||||||||||| Sbjct: 42103 gaaacttagtttcataaactt 42123
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 tgaggttttcttggatggccg 395 ||||||||||||||||||||| Sbjct: 650254 tgaggttttcttggatggccg 650274
>gb|AC093912.2| Homo sapiens BAC clone RP11-766E1 from 2, complete sequence Length = 194167 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 352 ttgcattagcagaattcatat 372 ||||||||||||||||||||| Sbjct: 6602 ttgcattagcagaattcatat 6622
>gb|AC165437.5| Mus musculus chromosome 15, clone RP23-285N11, complete sequence Length = 228289 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 tttccaaacatgatgagttaa 163 ||||||||||||||||||||| Sbjct: 133402 tttccaaacatgatgagttaa 133382
>ref|XM_844150.1| PREDICTED: Canis familiaris similar to transmembrane protein 28 (LOC607468), mRNA Length = 1449 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 cttggatggccgtgaaggag 403 |||||||||||||||||||| Sbjct: 33 cttggatggccgtgaaggag 52
>gb|AC132256.3| Mus musculus BAC clone RP24-358I7 from chromosome 8, complete sequence Length = 163897 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 acaacaaaaggcaggaatga 190 |||||||||||||||||||| Sbjct: 54935 acaacaaaaggcaggaatga 54916
>gb|AY436590.1| Homo sapiens nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) (NR3C1) gene, complete cds Length = 127687 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 acaattgcatgcttgcatta 359 |||||||||||||||||||| Sbjct: 23064 acaattgcatgcttgcatta 23045
>gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, complete sequence Length = 164668 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 acaattgcatgcttgcatta 359 |||||||||||||||||||| Sbjct: 100023 acaattgcatgcttgcatta 100042
>gb|AC105014.5| Homo sapiens chromosome 15, clone RP11-466P9, complete sequence Length = 189047 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 tgaaggagccacagatgttc 415 |||||||||||||||||||| Sbjct: 92284 tgaaggagccacagatgttc 92303
>gb|AC012634.8| Homo sapiens chromosome 5 clone CTD-2185H17, complete sequence Length = 237712 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 acaattgcatgcttgcatta 359 |||||||||||||||||||| Sbjct: 910 acaattgcatgcttgcatta 891
>gb|AC006529.1|AC006529 Homo sapiens clone SCb-20L24 from 7q31, complete sequence Length = 178069 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 ttctctccctacctatgttatcag 282 |||||||||||||||| ||||||| Sbjct: 86514 ttctctccctacctatattatcag 86537
>emb|AL513347.11| Mouse DNA sequence from clone RP23-476D16 on chromosome X, complete sequence Length = 176287 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ccaggatatccaagaagtca 336 |||||||||||||||||||| Sbjct: 82632 ccaggatatccaagaagtca 82651 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,771,412 Number of Sequences: 3902068 Number of extensions: 3771412 Number of successful extensions: 72217 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72080 Number of HSP's gapped (non-prelim): 137 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)