ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22j09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-7... 44 0.29
2emb|AL445383.5|CNS07ECZ Human chromosome 14 DNA sequence BAC R-8... 44 0.29
3gb|AC116648.4| Homo sapiens BAC clone RP11-764M6 from 4, complet... 42 1.1
4emb|BX279524.5| Zebrafish DNA sequence from clone DKEY-35H11 in ... 42 1.1
5emb|BX530092.15| Mouse DNA sequence from clone RP23-45N17 on chr... 42 1.1
6gb|AC105289.4| Homo sapiens BAC clone RP11-629A7 from 4, complet... 42 1.1
7emb|BX255969.8| Zebrafish DNA sequence from clone DKEY-67M7 in l... 42 1.1
8gb|AC150892.2| Mus musculus BAC clone RP24-383C4 from 5, complet... 42 1.1
9gb|AC140221.3| Mus musculus BAC clone RP23-281K10 from 5, comple... 42 1.1
10emb|CR396593.6| Zebrafish DNA sequence from clone CH211-194G1 in... 40 4.5
11emb|BX323847.8| Zebrafish DNA sequence from clone CH211-95G21 in... 40 4.5
12emb|AL928656.4| Zebrafish DNA sequence from clone CH211-10G22, c... 40 4.5
13emb|AL627405.17| Mouse DNA sequence from clone RP23-183D11 on ch... 40 4.5

>emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-736L22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171699

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 51    atgacattagtacatagaaaat 72
             ||||||||||||||||||||||
Sbjct: 46869 atgacattagtacatagaaaat 46848



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>emb|AL445383.5|CNS07ECZ Human chromosome 14 DNA sequence BAC R-88E18 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 172914

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 51     atgacattagtacatagaaaat 72
              ||||||||||||||||||||||
Sbjct: 148292 atgacattagtacatagaaaat 148271



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>gb|AC116648.4| Homo sapiens BAC clone RP11-764M6 from 4, complete sequence
          Length = 130445

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 57    ttagtacatagaaaattggaccaat 81
             |||||||||||| ||||||||||||
Sbjct: 80775 ttagtacatagataattggaccaat 80799



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>emb|BX279524.5| Zebrafish DNA sequence from clone DKEY-35H11 in linkage group 11,
             complete sequence
          Length = 157440

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     attacaatttacaatttnaatagc 32
             ||||||||||||||||| ||||||
Sbjct: 50847 attacaatttacaatttaaatagc 50870



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>emb|BX530092.15| Mouse DNA sequence from clone RP23-45N17 on chromosome X, complete
             sequence
          Length = 136088

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 8     aattacaatttacaatttnaatag 31
             |||||||||||||||||| |||||
Sbjct: 94923 aattacaatttacaatttaaatag 94946



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>gb|AC105289.4| Homo sapiens BAC clone RP11-629A7 from 4, complete sequence
          Length = 87579

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 35    atctgaatgtccacagatgac 55
             |||||||||||||||||||||
Sbjct: 28197 atctgaatgtccacagatgac 28217



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>emb|BX255969.8| Zebrafish DNA sequence from clone DKEY-67M7 in linkage group 11,
             complete sequence
          Length = 155717

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     attacaatttacaatttnaatagc 32
             ||||||||||||||||| ||||||
Sbjct: 85115 attacaatttacaatttaaatagc 85138



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>gb|AC150892.2| Mus musculus BAC clone RP24-383C4 from 5, complete sequence
          Length = 168742

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      tagtagaattacaatttacaa 22
              |||||||||||||||||||||
Sbjct: 141250 tagtagaattacaatttacaa 141270



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>gb|AC140221.3| Mus musculus BAC clone RP23-281K10 from 5, complete sequence
          Length = 184203

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 2      tagtagaattacaatttacaa 22
              |||||||||||||||||||||
Sbjct: 154911 tagtagaattacaatttacaa 154891



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>emb|CR396593.6| Zebrafish DNA sequence from clone CH211-194G1 in linkage group 5,
              complete sequence
          Length = 197143

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     gaccaataaaactgcaaaaa 94
              ||||||||||||||||||||
Sbjct: 195166 gaccaataaaactgcaaaaa 195185



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>emb|BX323847.8| Zebrafish DNA sequence from clone CH211-95G21 in linkage group 12,
             complete sequence
          Length = 154483

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    taaaactgcaaaaacgaaag 100
             ||||||||||||||||||||
Sbjct: 29651 taaaactgcaaaaacgaaag 29632



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>emb|AL928656.4| Zebrafish DNA sequence from clone CH211-10G22, complete sequence
          Length = 153897

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     taaaactgcaaaaacgaaag 100
              ||||||||||||||||||||
Sbjct: 122030 taaaactgcaaaaacgaaag 122049



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>emb|AL627405.17| Mouse DNA sequence from clone RP23-183D11 on chromosome 4, complete
              sequence
          Length = 193847

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     accaataaaactgcaaaaac 95
              ||||||||||||||||||||
Sbjct: 125463 accaataaaactgcaaaaac 125444


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,077,701
Number of Sequences: 3902068
Number of extensions: 1077701
Number of successful extensions: 20716
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20702
Number of HSP's gapped (non-prelim): 14
length of query: 339
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 317
effective length of database: 17,147,199,772
effective search space: 5435662327724
effective search space used: 5435662327724
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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