>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)|
           (Fragment)
          Length = 1078

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -3

Query: 576 STPQRFWLPLLHDSVKLLNCKPH----PLLNVAETTLLLNK 466
           STP +  +P LH+ ++ LNC P      L ++ +T  LLNK
Sbjct: 347 STPLKPPVPNLHEDIQKLNCNPELFRCTLTSIPQTQALLNK 387

>POLG_HCVEU (O39927) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3017

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
 Frame = -3

Query: 558  WLPLLH-----DSVKLLNCKPHPLLNVAETTLLLNKLQEL-----SMAKLRPDFCSNHLP 409
            W+P L      DS+ LL C  HP L    T +LL  L  L     S+ K+ P F   H+ 
Sbjct: 863  WVPDLRVRGGRDSIILLTCLLHPQLGFEVTKILLAVLAPLYILQYSLLKV-PYFVRAHIL 921

Query: 408  IHALSSVRLALGSNLARAIL 349
            + A   VR   G    +A L
Sbjct: 922  LRACLLVRRLAGGKYVQACL 941

>POLG_HCV6A (Q5I2N3) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3018

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
 Frame = -3

Query: 558  WLPLLH-----DSVKLLNCKPHPLLNVAETTLLLNKLQEL-----SMAKLRPDFCSNHLP 409
            W+P L      DS+ LL C  HP L    T +LL  L  L     S+ K+ P F   H+ 
Sbjct: 864  WVPDLRVRGGRDSIILLTCLLHPQLGFEVTKILLAILAPLYILQYSLLKV-PYFVRAHIL 922

Query: 408  IHALSSVRLALGSNLARAIL 349
            + A   VR   G    +A L
Sbjct: 923  LRACLLVRRLAGGRYVQACL 942

>MURB_AGRT5 (Q8UDN0) UDP-N-acetylenolpyruvoylglucosamine reductase (EC|
           1.1.1.158) (UDP-N-acetylmuramate dehydrogenase)
          Length = 321

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +3

Query: 297 RHQTGA----NPPPDTAFKLLQEWHGRGLIPGPT*QSSVH 404
           R QTG     NP   +A++L+ E  GRGL+ G    SS+H
Sbjct: 226 REQTGGSTFKNPEGHSAWELIDEAGGRGLVIGGAQMSSLH 265

>NELFD_DROME (Q24134) Negative elongation factor D|
          Length = 578

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 549 LLHDSVKLLNCKPHPLLNVAETTLLLNKLQELSMAKLRPDFCSNHLPI 406
           L+ +   L NC  +P++ V     + N + E S  KL  D C  HL +
Sbjct: 396 LIAELQTLYNCIKYPVVGVGVIRWIENVVMEPSYFKLSTDSCPTHLAV 443


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,749,779
Number of Sequences: 219361
Number of extensions: 1773051
Number of successful extensions: 4124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4123
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)