ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22j05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191185.1| Oryza sativa (japonica cultivar-group), predic... 210 4e-51
2dbj|AK072636.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
3dbj|AK066787.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 1e-48
4gb|BT017544.1| Zea mays clone EL01N0422G11.c mRNA sequence 190 4e-45
5gb|AY104899.1| Zea mays PCO137155 mRNA sequence 190 4e-45
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 113 7e-22
7dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic D... 113 7e-22
8gb|AC122118.7| Mus musculus chromosome 18, clone RP24-225P17, co... 46 0.14
9gb|AC129078.6| Mus musculus BAC clone RP24-71C5 from chromosome ... 46 0.14
10gb|AC135290.5| Mus musculus BAC clone RP23-58D13 from 18, comple... 46 0.14
11ref|XM_569091.1| Cryptococcus neoformans var. neoformans JEC21 h... 44 0.55
12gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chr... 44 0.55
13gb|AC162379.2| Mus musculus BAC clone RP23-132A15 from chromosom... 42 2.2
14gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.2
15gb|AC158527.2| Mus musculus BAC clone RP23-266E16 from chromosom... 42 2.2
16gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complet... 42 2.2
17gb|BC054332.1| Xenopus laevis cDNA clone IMAGE:6878591 42 2.2
18emb|AL033547.8|HS340K22 Human DNA sequence from clone RP3-340K22... 42 2.2
19gb|AF517634.1| Drosophila melanogaster BIR-containing ubiquitin-... 42 2.2
20gb|AY119104.1| Drosophila melanogaster RE07981 full insert cDNA 42 2.2
21ref|NM_141738.3| Drosophila melanogaster Bruce CG6303-RA (Bruce)... 42 2.2
22gb|AC008357.8| Drosophila melanogaster, chromosome 3R, region 86... 42 2.2
23gb|AC160392.2| Mus musculus BAC clone RP23-240E9 from chromosome... 42 2.2
24dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
25tpe|BN000599.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 42 2.2
26gb|AE003686.4| Drosophila melanogaster chromosome 3R, section 24... 42 2.2
27gb|AC154204.2| Mus musculus BAC clone RP24-393D5 from chromosome... 40 8.5
28gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete g... 40 8.5
29gb|AC147831.2| Xenopus tropicalis clone CH216-159I14, complete s... 40 8.5
30gb|AY653018.1| Tetrahymena thermophila clone Cbs 3L-3 chromosome... 40 8.5
31gb|AC009055.10| Homo sapiens chromosome 16 clone RP11-256I9, com... 40 8.5
32gb|AY247011.1| Diaeretiella rapae microsatellite dr271 sequence 40 8.5
33gb|AC121998.2| Mus musculus BAC clone RP24-318H5 from 2, complet... 40 8.5
34gb|AC100153.10| Mus musculus chromosome 7, clone RP23-43N3, comp... 40 8.5
35emb|BX004991.18| Zebrafish DNA sequence from clone CH211-222F23 ... 40 8.5
36gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 8.5
37emb|AL157396.9| Human DNA sequence from clone RP11-437J2 on chro... 40 8.5
38emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P... 40 8.5
39emb|AJ699161.1| Nicotiana plumbaginifolia mRNA for calcium-depen... 40 8.5
40emb|AL607126.9| Mouse DNA sequence from clone RP23-206I16 on chr... 40 8.5
41emb|CR926359.1| Xenopus tropicalis finished cDNA, clone TGas019m24 40 8.5
42gb|AC153763.3| Loxodonta africana clone VMRC15-160B20, complete ... 40 8.5
43gb|AE014183.1| Mus musculus piebald deletion region section 11 o... 40 8.5
44gb|AC099544.2| Homo sapiens chromosome 3 clone RP11-600G19, comp... 40 8.5
45gb|AC008888.7| Homo sapiens chromosome 19 clone CTD-2221F12, com... 40 8.5
46gb|AC023150.5| Homo sapiens BAC clone RP11-709L9 from 4, complet... 40 8.5
47gb|AC099521.2| Homo sapiens chromosome 16 clone RP11-71L14, comp... 40 8.5
48gb|AC024903.17| Homo sapiens 16 BAC RP11-71L14 (Roswell Park Can... 40 8.5
49gb|AC009162.11| Homo sapiens chromosome 16 clone RP11-76H6, comp... 40 8.5
50gb|AC153771.3| Loxodonta africana clone VMRC15-435I22, complete ... 40 8.5
51gb|AC010606.7| Homo sapiens chromosome 19 clone CTB-25J19, compl... 40 8.5
52ref|NM_001015938.1| Xenopus tropicalis hypothetical protein LOC5... 40 8.5
53gb|AC074290.5| Homo sapiens BAC clone RP11-305O20 from 2, comple... 40 8.5
54gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Canc... 40 8.5
55gb|AC135966.2| Homo sapiens chromosome 3 clone RP11-94D3, comple... 40 8.5
56emb|BX648699.1|HSM808850 Homo sapiens mRNA; cDNA DKFZp686H1339 (... 40 8.5
57gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete se... 40 8.5
58gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, comple... 40 8.5
59emb|AL929234.9| Mouse DNA sequence from clone RP24-225K18 on chr... 40 8.5
60gb|AC156456.1| Loxodonta africana, clone Loxodonta africana-6767... 40 8.5
61dbj|AP006091.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 8.5
62emb|AL928665.8| Mouse DNA sequence from clone RP23-294O23 on chr... 40 8.5
63emb|AL833773.6| Mouse DNA sequence from clone RP23-434A2 on chro... 40 8.5
64gb|AC166834.2| Mus musculus BAC clone RP23-158D24 from chromosom... 40 8.5 
>ref|NM_191185.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2202

 Score =  210 bits (106), Expect = 4e-51
 Identities = 234/277 (84%)
 Strand = Plus / Minus

                                                                        
Query: 343  ttcttcaagaatggcacgggcgaggtttgatcccagggccaacctgacagagctcagtgc 402
            |||||||||||| ||||| || ||||||||| | || || || ||||| ||| ||| |||
Sbjct: 2196 ttcttcaagaattgcacgcgcaaggtttgatgctagagctaatctgacggagttcaatgc 2137

                                                                        
Query: 403  atggattggtaggtgattactgcagaagtcaggacgcagcttggccattgacagttcttg 462
            |||| ||||||||||| |  || | |||||||| || || ||||||| ||||||||||||
Sbjct: 2136 atggcttggtaggtgaatgttggaaaagtcaggccgaagtttggccaatgacagttcttg 2077

                                                                        
Query: 463  tagcttattgagcaacaaggtcgtctcggcaacattcaataaagggtggggtttgcagtt 522
            |||||| ||||||||||| ||||| || |||||||| || || |||  ||||||||| ||
Sbjct: 2076 tagcttgttgagcaacaaagtcgtttcagcaacatttaacaatgggcagggtttgcaatt 2017

                                                                        
Query: 523  aagtagtttcactgagtcatgtagaaggggcagccagaaacgttgtggtgtagaangatt 582
             || ||  |||| |||||||||| ||| || |||||||||||||| ||||||||| ||||
Sbjct: 2016 gagaagcctcaccgagtcatgtaaaagtggtagccagaaacgttgaggtgtagaaggatt 1957

                                                 
Query: 583  tctcattagctgtataagaaactccacggtctgccga 619
            |||||| ||||||||||||||||||||||| ||||||
Sbjct: 1956 tctcatcagctgtataagaaactccacggtttgccga 1920
to top
>dbj|AK072636.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133F04, full
            insert sequence
          Length = 2628

 Score =  210 bits (106), Expect = 4e-51
 Identities = 234/277 (84%)
 Strand = Plus / Minus

                                                                        
Query: 343  ttcttcaagaatggcacgggcgaggtttgatcccagggccaacctgacagagctcagtgc 402
            |||||||||||| ||||| || ||||||||| | || || || ||||| ||| ||| |||
Sbjct: 2322 ttcttcaagaattgcacgcgcaaggtttgatgctagagctaatctgacggagttcaatgc 2263

                                                                        
Query: 403  atggattggtaggtgattactgcagaagtcaggacgcagcttggccattgacagttcttg 462
            |||| ||||||||||| |  || | |||||||| || || ||||||| ||||||||||||
Sbjct: 2262 atggcttggtaggtgaatgttggaaaagtcaggccgaagtttggccaatgacagttcttg 2203

                                                                        
Query: 463  tagcttattgagcaacaaggtcgtctcggcaacattcaataaagggtggggtttgcagtt 522
            |||||| ||||||||||| ||||| || |||||||| || || |||  ||||||||| ||
Sbjct: 2202 tagcttgttgagcaacaaagtcgtttcagcaacatttaacaatgggcagggtttgcaatt 2143

                                                                        
Query: 523  aagtagtttcactgagtcatgtagaaggggcagccagaaacgttgtggtgtagaangatt 582
             || ||  |||| |||||||||| ||| || |||||||||||||| ||||||||| ||||
Sbjct: 2142 gagaagcctcaccgagtcatgtaaaagtggtagccagaaacgttgaggtgtagaaggatt 2083

                                                 
Query: 583  tctcattagctgtataagaaactccacggtctgccga 619
            |||||| ||||||||||||||||||||||| ||||||
Sbjct: 2082 tctcatcagctgtataagaaactccacggtttgccga 2046
to top
>dbj|AK066787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075G22, full
            insert sequence
          Length = 2482

 Score =  202 bits (102), Expect = 1e-48
 Identities = 233/277 (84%)
 Strand = Plus / Minus

                                                                        
Query: 343  ttcttcaagaatggcacgggcgaggtttgatcccagggccaacctgacagagctcagtgc 402
            |||||||||||| ||||| || ||||||||| | || || || ||||| ||| ||| |||
Sbjct: 2138 ttcttcaagaattgcacgcgcaaggtttgatgctagagctaatctgacggagttcaatgc 2079

                                                                        
Query: 403  atggattggtaggtgattactgcagaagtcaggacgcagcttggccattgacagttcttg 462
            |||| ||||||||||| |  || | | |||||| || || ||||||| ||||||||||||
Sbjct: 2078 atggcttggtaggtgaatgttggaaaggtcaggccgaagtttggccaatgacagttcttg 2019

                                                                        
Query: 463  tagcttattgagcaacaaggtcgtctcggcaacattcaataaagggtggggtttgcagtt 522
            |||||| ||||||||||| ||||| || |||||||| || || |||  ||||||||| ||
Sbjct: 2018 tagcttgttgagcaacaaagtcgtttcagcaacatttaacaatgggcagggtttgcaatt 1959

                                                                        
Query: 523  aagtagtttcactgagtcatgtagaaggggcagccagaaacgttgtggtgtagaangatt 582
             || ||  |||| |||||||||| ||| || |||||||||||||| ||||||||| ||||
Sbjct: 1958 gagaagcctcaccgagtcatgtaaaagtggtagccagaaacgttgaggtgtagaaggatt 1899

                                                 
Query: 583  tctcattagctgtataagaaactccacggtctgccga 619
            |||||| ||||||||||||||||||||||| ||||||
Sbjct: 1898 tctcatcagctgtataagaaactccacggtttgccga 1862
to top
>gb|BT017544.1| Zea mays clone EL01N0422G11.c mRNA sequence
          Length = 1370

 Score =  190 bits (96), Expect = 4e-45
 Identities = 236/283 (83%)
 Strand = Plus / Minus

                                                                        
Query: 344  tcttcaagaatggcacgggcgaggtttgatcccagggccaacctgacagagctcagtgca 403
            |||||||||| |||||| || || |||||| |||| ||||| || ||||||||||  |||
Sbjct: 1158 tcttcaagaacggcacgtgccagatttgatgccagagccaatctcacagagctcatcgca 1099

                                                                        
Query: 404  tggattggtaggtgattactgcagaagtcaggacgcagcttggccattgacagttcttgt 463
            ||| ||||||||||||||||| | || ||||| |||||||||||||||||||| ||||| 
Sbjct: 1098 tggcttggtaggtgattactggaaaaatcagggcgcagcttggccattgacagctcttgc 1039

                                                                        
Query: 464  agcttattgagcaacaaggtcgtctcggcaacattcaataaagggtggggtttgcagtta 523
            ||||| ||||||||||| |||||||| ||||||| ||  | ||||  | ||||||  |||
Sbjct: 1038 agcttgttgagcaacaatgtcgtctcagcaacatccataagagggctgagtttgctatta 979

                                                                        
Query: 524  agtagtttcactgagtcatgtagaaggggcagccagaaacgttgtggtgtagaangattt 583
            ||||| | ||| || |||||||||||||| |||||||||||||| ||||| ||  | |||
Sbjct: 978  agtagctccaccgaatcatgtagaaggggtagccagaaacgttgaggtgtggatgggttt 919

                                                       
Query: 584  ctcattagctgtataagaaactccacggtctgccgagcagcct 626
             |||| |||||||| | ||| ||||| || || ||||||||||
Sbjct: 918  ttcataagctgtattaaaaaatccacagtttgtcgagcagcct 876
to top
>gb|AY104899.1| Zea mays PCO137155 mRNA sequence
          Length = 793

 Score =  190 bits (96), Expect = 4e-45
 Identities = 236/283 (83%)
 Strand = Plus / Plus

                                                                       
Query: 344 tcttcaagaatggcacgggcgaggtttgatcccagggccaacctgacagagctcagtgca 403
           |||||||||| |||||| || || |||||| |||| ||||| || ||||||||||  |||
Sbjct: 283 tcttcaagaacggcacgtgccagatttgatgccagagccaatctcacagagctcatcgca 342

                                                                       
Query: 404 tggattggtaggtgattactgcagaagtcaggacgcagcttggccattgacagttcttgt 463
           ||| ||||||||||||||||| | || ||||| |||||||||||||||||||| ||||| 
Sbjct: 343 tggcttggtaggtgattactggaaaaatcagggcgcagcttggccattgacagctcttgc 402

                                                                       
Query: 464 agcttattgagcaacaaggtcgtctcggcaacattcaataaagggtggggtttgcagtta 523
           ||||| ||||||||||| |||||||| ||||||| ||  | ||||  | ||||||  |||
Sbjct: 403 agcttgttgagcaacaatgtcgtctcagcaacatccataagagggctgagtttgctatta 462

                                                                       
Query: 524 agtagtttcactgagtcatgtagaaggggcagccagaaacgttgtggtgtagaangattt 583
           ||||| | ||| || |||||||||||||| |||||||||||||| ||||| ||  | |||
Sbjct: 463 agtagctccaccgaatcatgtagaaggggtagccagaaacgttgaggtgtggatgggttt 522

                                                      
Query: 584 ctcattagctgtataagaaactccacggtctgccgagcagcct 626
            |||| |||||||| | ||| ||||| || || ||||||||||
Sbjct: 523 ttcataagctgtattaaaaaatccacagtttgtcgagcagcct 565
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  113 bits (57), Expect = 7e-22
 Identities = 147/177 (83%)
 Strand = Plus / Minus

                                                                            
Query: 343      ttcttcaagaatggcacgggcgaggtttgatcccagggccaacctgacagagctcagtgc 402
                |||||||||||| ||||| || ||||||||| | || || || ||||| ||| ||| |||
Sbjct: 31204187 ttcttcaagaattgcacgcgcaaggtttgatgctagagctaatctgacggagttcaatgc 31204128

                                                                            
Query: 403      atggattggtaggtgattactgcagaagtcaggacgcagcttggccattgacagttcttg 462
                |||| ||||||||||| |  || | |||||||| || || ||||||| ||||||||||||
Sbjct: 31204127 atggcttggtaggtgaatgttggaaaagtcaggccgaagtttggccaatgacagttcttg 31204068

                                                                         
Query: 463      tagcttattgagcaacaaggtcgtctcggcaacattcaataaagggtggggtttgca 519
                |||||| ||||||||||| ||||| || |||||||| || || |||  |||||||||
Sbjct: 31204067 tagcttgttgagcaacaaagtcgtttcagcaacatttaacaatgggcagggtttgca 31204011



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 536      gagtcatgtagaaggggcagccagaaacgttgtggtgtagaangatttctcattagctg 594
                |||||||||| ||| || |||||||||||||| ||||||||| |||||||||| |||||
Sbjct: 31203865 gagtcatgtaaaagtggtagccagaaacgttgaggtgtagaaggatttctcatcagctg 31203807



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 592      ctgtataagaaactccacggtctgccga 619
                ||||||||||||||||||||| ||||||
Sbjct: 31203669 ctgtataagaaactccacggtttgccga 31203642
to top
>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0014K08
          Length = 177263

 Score =  113 bits (57), Expect = 7e-22
 Identities = 147/177 (83%)
 Strand = Plus / Minus

                                                                          
Query: 343    ttcttcaagaatggcacgggcgaggtttgatcccagggccaacctgacagagctcagtgc 402
              |||||||||||| ||||| || ||||||||| | || || || ||||| ||| ||| |||
Sbjct: 130532 ttcttcaagaattgcacgcgcaaggtttgatgctagagctaatctgacggagttcaatgc 130473

                                                                          
Query: 403    atggattggtaggtgattactgcagaagtcaggacgcagcttggccattgacagttcttg 462
              |||| ||||||||||| |  || | |||||||| || || ||||||| ||||||||||||
Sbjct: 130472 atggcttggtaggtgaatgttggaaaagtcaggccgaagtttggccaatgacagttcttg 130413

                                                                       
Query: 463    tagcttattgagcaacaaggtcgtctcggcaacattcaataaagggtggggtttgca 519
              |||||| ||||||||||| ||||| || |||||||| || || |||  |||||||||
Sbjct: 130412 tagcttgttgagcaacaaagtcgtttcagcaacatttaacaatgggcagggtttgca 130356



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                         
Query: 536    gagtcatgtagaaggggcagccagaaacgttgtggtgtagaangatttctcattagctg 594
              |||||||||| ||| || |||||||||||||| ||||||||| |||||||||| |||||
Sbjct: 130210 gagtcatgtaaaagtggtagccagaaacgttgaggtgtagaaggatttctcatcagctg 130152



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 592    ctgtataagaaactccacggtctgccga 619
              ||||||||||||||||||||| ||||||
Sbjct: 130014 ctgtataagaaactccacggtttgccga 129987
to top
>gb|AC122118.7| Mus musculus chromosome 18, clone RP24-225P17, complete sequence
          Length = 190301

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 257  caacaacaacaaaatactgagcctggt 283
            |||||||||||||| ||||||||||||
Sbjct: 8670 caacaacaacaaaaaactgagcctggt 8644
to top
>gb|AC129078.6| Mus musculus BAC clone RP24-71C5 from chromosome 18, complete sequence
          Length = 215826

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 257   caacaacaacaaaatactgagcctggt 283
             |||||||||||||| ||||||||||||
Sbjct: 91161 caacaacaacaaaaaactgagcctggt 91187
to top
>gb|AC135290.5| Mus musculus BAC clone RP23-58D13 from 18, complete sequence
          Length = 233915

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 257   caacaacaacaaaatactgagcctggt 283
             |||||||||||||| ||||||||||||
Sbjct: 62246 caacaacaacaaaaaactgagcctggt 62272
to top
>ref|XM_569091.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNB00830) partial mRNA
          Length = 892

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 375 ccagggccaacctgacagagctcagt 400
           |||||||||| |||||||||||||||
Sbjct: 60  ccagggccaaactgacagagctcagt 85
to top
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
              sequence
          Length = 1632307

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 375    ccagggccaacctgacagagctcagt 400
              |||||||||| |||||||||||||||
Sbjct: 237797 ccagggccaaactgacagagctcagt 237822
to top
>gb|AC162379.2| Mus musculus BAC clone RP23-132A15 from chromosome 12, complete sequence
          Length = 238126

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 247    aaactcttctcaacaacaacaaaat 271
              ||||| |||||||||||||||||||
Sbjct: 145276 aaacttttctcaacaacaacaaaat 145252
to top
>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07,
              complete sequence
          Length = 151399

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 340    agcttcttcaagaatggcacg 360
              |||||||||||||||||||||
Sbjct: 106488 agcttcttcaagaatggcacg 106468
to top
>gb|AC158527.2| Mus musculus BAC clone RP23-266E16 from chromosome 12, complete sequence
          Length = 218736

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 247    aaactcttctcaacaacaacaaaat 271
              ||||| |||||||||||||||||||
Sbjct: 214903 aaacttttctcaacaacaacaaaat 214879
to top
>gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complete sequence
          Length = 177378

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 338    caagcttcttcaagaatggca 358
              |||||||||||||||||||||
Sbjct: 147246 caagcttcttcaagaatggca 147226
to top
>gb|BC054332.1| Xenopus laevis cDNA clone IMAGE:6878591
          Length = 1299

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 554 agccagaaacgttgtggtgta 574
           |||||||||||||||||||||
Sbjct: 145 agccagaaacgttgtggtgta 165
to top
>emb|AL033547.8|HS340K22 Human DNA sequence from clone RP3-340K22 on chromosome 22q13.1-13.31,
             complete sequence
          Length = 30893

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 257   caacaacaacaaaatactgag 277
             |||||||||||||||||||||
Sbjct: 13972 caacaacaacaaaatactgag 13992
to top
>gb|AF517634.1| Drosophila melanogaster BIR-containing ubiquitin-conjugating enzyme
            (Bruce) mRNA, complete cds
          Length = 14794

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 320  tccaccagatacagcattcaa 340
            |||||||||||||||||||||
Sbjct: 1507 tccaccagatacagcattcaa 1487
to top
>gb|AY119104.1| Drosophila melanogaster RE07981 full insert cDNA
          Length = 3617

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 320  tccaccagatacagcattcaa 340
            |||||||||||||||||||||
Sbjct: 1507 tccaccagatacagcattcaa 1487
to top
>ref|NM_141738.3| Drosophila melanogaster Bruce CG6303-RA (Bruce), mRNA
          Length = 14793

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 320  tccaccagatacagcattcaa 340
            |||||||||||||||||||||
Sbjct: 1506 tccaccagatacagcattcaa 1486
to top
>gb|AC008357.8| Drosophila melanogaster, chromosome 3R, region 86A-86A, BAC clone
             BACR03L12, complete sequence
          Length = 190672

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 320   tccaccagatacagcattcaa 340
             |||||||||||||||||||||
Sbjct: 63122 tccaccagatacagcattcaa 63142
to top
>gb|AC160392.2| Mus musculus BAC clone RP23-240E9 from chromosome 9, complete sequence
          Length = 199695

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 338   caagcttcttcaagaatggca 358
             |||||||||||||||||||||
Sbjct: 12487 caagcttcttcaagaatggca 12467
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 340     agcttcttcaagaatggcacg 360
               |||||||||||||||||||||
Sbjct: 2013611 agcttcttcaagaatggcacg 2013591
to top
>tpe|BN000599.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx70 gene for
           class III peroxidase 70 precursor, exons 1-2
          Length = 1356

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 340 agcttcttcaagaatggcacg 360
           |||||||||||||||||||||
Sbjct: 255 agcttcttcaagaatggcacg 235
to top
>gb|AE003686.4| Drosophila melanogaster chromosome 3R, section 24 of 118 of the complete
              sequence
          Length = 223505

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 320    tccaccagatacagcattcaa 340
              |||||||||||||||||||||
Sbjct: 167458 tccaccagatacagcattcaa 167478
to top
>gb|AC154204.2| Mus musculus BAC clone RP24-393D5 from chromosome 17, complete sequence
          Length = 183408

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   accaaagctaaaaacaatag 200
             ||||||||||||||||||||
Sbjct: 34444 accaaagctaaaaacaatag 34425
to top
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome
          Length = 2314078

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 107    atgccgggttttttacccaatgat 130
              ||||||| ||||||||||||||||
Sbjct: 731841 atgccggattttttacccaatgat 731818
to top
>gb|AC147831.2| Xenopus tropicalis clone CH216-159I14, complete sequence
          Length = 145109

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 538   gtcatgtagaaggggcagcc 557
             ||||||||||||||||||||
Sbjct: 51938 gtcatgtagaaggggcagcc 51919
to top
>gb|AY653018.1| Tetrahymena thermophila clone Cbs 3L-3 chromosome breakage
           sequence; micronuclear
          Length = 672

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 aattcaaactcttctcaaca 261
           ||||||||||||||||||||
Sbjct: 641 aattcaaactcttctcaaca 622
to top
>gb|AC009055.10| Homo sapiens chromosome 16 clone RP11-256I9, complete sequence
          Length = 170831

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    caacaacaacaaaatactga 276
              ||||||||||||||||||||
Sbjct: 160555 caacaacaacaaaatactga 160536
to top
>gb|AY247011.1| Diaeretiella rapae microsatellite dr271 sequence
          Length = 433

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 caacaacaacaaaatactga 276
           ||||||||||||||||||||
Sbjct: 339 caacaacaacaaaatactga 320
to top
>gb|AC121998.2| Mus musculus BAC clone RP24-318H5 from 2, complete sequence
          Length = 135317

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 247   aaactcttctcaacaacaacaaaa 270
             ||||| ||||||||||||||||||
Sbjct: 32675 aaactattctcaacaacaacaaaa 32652
to top
>gb|AC100153.10| Mus musculus chromosome 7, clone RP23-43N3, complete sequence
          Length = 132518

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 503   aaagggtggggtttgcagttaagt 526
             |||| |||||||||||||||||||
Sbjct: 57148 aaagtgtggggtttgcagttaagt 57125
to top
>emb|BX004991.18| Zebrafish DNA sequence from clone CH211-222F23 in linkage group 9,
              complete sequence
          Length = 202138

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    caacaacaacaaaatactga 276
              ||||||||||||||||||||
Sbjct: 125196 caacaacaacaaaatactga 125177
to top
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 466    cttattgagcaacaaggtcgtctc 489
              |||||||||||||| |||||||||
Sbjct: 663888 cttattgagcaacatggtcgtctc 663911
to top
>emb|AL157396.9| Human DNA sequence from clone RP11-437J2 on chromosome 10 Contains the
             3' end of the PDE6C gene for phosphodiesterase 6C,
             cGMP-specific, cone, alpha prime (PDEA2), the C10orf4 gene
             for chromosome 10 open reading frame 4 and the 5' end of
             the LGI1 gene for leucine-rich glioma inactivated 1,
             complete sequence
          Length = 128796

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 257   caacaacaacaaaatactga 276
             ||||||||||||||||||||
Sbjct: 42844 caacaacaacaaaatactga 42863
to top
>emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P3 on chromosome 10 Contains a
              novel gene, the 5' end of the TCF8 gene for transcription
              factor 8 (represses interleukin 2 expression)
              (BZP,ZEB,ZEB1,AREB6,ZFHEP,NIL-2A,ZFHX1A,NIL-2-A), a
              pseudogene similar to part of serine palmitoyltransferase,
              long chain base subunit 1 (SPTLC1) (HSAN, HSN1, LBC1, LCB1,
              SPT1, SPTI) and two CpG islands, complete sequence
          Length = 187517

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    caacaacaacaaaatactga 276
              ||||||||||||||||||||
Sbjct: 156704 caacaacaacaaaatactga 156685
to top
>emb|AJ699161.1| Nicotiana plumbaginifolia mRNA for calcium-dependent protein kinase
           17 (cpk17 gene)
          Length = 1698

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 253 ttctcaacaacaacaaaata 272
           ||||||||||||||||||||
Sbjct: 102 ttctcaacaacaacaaaata 121
to top
>emb|AL607126.9| Mouse DNA sequence from clone RP23-206I16 on chromosome 11, complete
              sequence
          Length = 221930

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 247    aaactcttctcaacaacaacaaaa 270
              ||||| ||||||||||||||||||
Sbjct: 145759 aaactattctcaacaacaacaaaa 145782
to top
>emb|CR926359.1| Xenopus tropicalis finished cDNA, clone TGas019m24
          Length = 1900

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 328  atacagcattcaagcttctt 347
            ||||||||||||||||||||
Sbjct: 1728 atacagcattcaagcttctt 1709
to top
>gb|AC153763.3| Loxodonta africana clone VMRC15-160B20, complete sequence
          Length = 130183

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   ttctcaacaacaacaaaata 272
             ||||||||||||||||||||
Sbjct: 11777 ttctcaacaacaacaaaata 11796
to top
>gb|AE014183.1| Mus musculus piebald deletion region section 11 of 11 of the complete
              sequence
          Length = 249616

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 257    caacaacaacaaaatactgagcct 280
              |||||||||||||||||| |||||
Sbjct: 100620 caacaacaacaaaatactcagcct 100597
to top
>gb|AC099544.2| Homo sapiens chromosome 3 clone RP11-600G19, complete sequence
          Length = 184019

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   caacaacaacaaaatactga 276
             ||||||||||||||||||||
Sbjct: 55553 caacaacaacaaaatactga 55534
to top
>gb|AC008888.7| Homo sapiens chromosome 19 clone CTD-2221F12, complete sequence
          Length = 119631

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   tcttctcaacaacaacaaaa 270
             ||||||||||||||||||||
Sbjct: 34849 tcttctcaacaacaacaaaa 34830
to top
>gb|AC023150.5| Homo sapiens BAC clone RP11-709L9 from 4, complete sequence
          Length = 188782

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   caacaacaacaaaatactga 276
             ||||||||||||||||||||
Sbjct: 92747 caacaacaacaaaatactga 92728
to top
>gb|AC099521.2| Homo sapiens chromosome 16 clone RP11-71L14, complete sequence
          Length = 167245

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   caacaacaacaaaatactga 276
             ||||||||||||||||||||
Sbjct: 74626 caacaacaacaaaatactga 74607
to top
>gb|AC024903.17| Homo sapiens 16 BAC RP11-71L14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167238

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   caacaacaacaaaatactga 276
             ||||||||||||||||||||
Sbjct: 74620 caacaacaacaaaatactga 74601
to top
>gb|AC009162.11| Homo sapiens chromosome 16 clone RP11-76H6, complete sequence
          Length = 181650

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 257    caacaacaacaaaatactga 276
              ||||||||||||||||||||
Sbjct: 148477 caacaacaacaaaatactga 148496
to top
>gb|AC153771.3| Loxodonta africana clone VMRC15-435I22, complete sequence
          Length = 132352

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 253  ttctcaacaacaacaaaata 272
            ||||||||||||||||||||
Sbjct: 2652 ttctcaacaacaacaaaata 2671
to top
>gb|AC010606.7| Homo sapiens chromosome 19 clone CTB-25J19, complete sequence
          Length = 105940

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   cttctcaacaacaacaaaat 271
             ||||||||||||||||||||
Sbjct: 61220 cttctcaacaacaacaaaat 61239
to top
>ref|NM_001015938.1| Xenopus tropicalis hypothetical protein LOC548692 (LOC548692), mRNA
          Length = 1900

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 328  atacagcattcaagcttctt 347
            ||||||||||||||||||||
Sbjct: 1728 atacagcattcaagcttctt 1709
to top
>gb|AC074290.5| Homo sapiens BAC clone RP11-305O20 from 2, complete sequence
          Length = 172706

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   ctcaacaacaacaaaatact 274
             ||||||||||||||||||||
Sbjct: 42081 ctcaacaacaacaaaatact 42100
to top
>gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166966

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   actcttctcaacaacaacaa 268
             ||||||||||||||||||||
Sbjct: 59364 actcttctcaacaacaacaa 59383
to top
>gb|AC135966.2| Homo sapiens chromosome 3 clone RP11-94D3, complete sequence
          Length = 162867

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 257   caacaacaacaaaatactga 276
             ||||||||||||||||||||
Sbjct: 21369 caacaacaacaaaatactga 21388
to top
>emb|BX648699.1|HSM808850 Homo sapiens mRNA; cDNA DKFZp686H1339 (from clone DKFZp686H1339)
          Length = 3644

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 257  caacaacaacaaaatactga 276
            ||||||||||||||||||||
Sbjct: 2148 caacaacaacaaaatactga 2129
to top
>gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete sequence
          Length = 198084

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   caacaacaacaaaatactga 276
             ||||||||||||||||||||
Sbjct: 39116 caacaacaacaaaatactga 39097
to top
>gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, complete sequence
          Length = 210342

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     acaggctcactgtgagtaca 90
              ||||||||||||||||||||
Sbjct: 108505 acaggctcactgtgagtaca 108524
to top
>emb|AL929234.9| Mouse DNA sequence from clone RP24-225K18 on chromosome 11, complete
             sequence
          Length = 168500

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     aaacgttggaggaaggaaca 27
             ||||||||||||||||||||
Sbjct: 13907 aaacgttggaggaaggaaca 13926
to top
>gb|AC156456.1| Loxodonta africana, clone Loxodonta africana-6767875J3, complete
             sequence
          Length = 40567

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   ttctcaacaacaacaaaata 272
             ||||||||||||||||||||
Sbjct: 32522 ttctcaacaacaacaaaata 32503
to top
>dbj|AP006091.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT21D16, TM0157a,
             complete sequence
          Length = 72616

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   cgtataaaatacgacagaca 171
             ||||||||||||||||||||
Sbjct: 67664 cgtataaaatacgacagaca 67645
to top
>emb|AL928665.8| Mouse DNA sequence from clone RP23-294O23 on chromosome 2, complete
             sequence
          Length = 81950

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 247   aaactcttctcaacaacaacaaaa 270
             ||||| ||||||||||||||||||
Sbjct: 70966 aaactattctcaacaacaacaaaa 70989
to top
>emb|AL833773.6| Mouse DNA sequence from clone RP23-434A2 on chromosome 4, complete
             sequence
          Length = 157131

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   actcttctcaacaacaacaa 268
             ||||||||||||||||||||
Sbjct: 18720 actcttctcaacaacaacaa 18739
to top
>gb|AC166834.2| Mus musculus BAC clone RP23-158D24 from chromosome 7, complete
            sequence
          Length = 212016

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 503  aaagggtggggtttgcagttaagt 526
            |||| |||||||||||||||||||
Sbjct: 9773 aaagtgtggggtttgcagttaagt 9796


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,287,413
Number of Sequences: 3902068
Number of extensions: 6287413
Number of successful extensions: 214149
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 213846
Number of HSP's gapped (non-prelim): 300
length of query: 626
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 603
effective length of database: 17,143,297,704
effective search space: 10337408515512
effective search space used: 10337408515512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top