ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal0g11 |
|---|---|
| Clone Library Name | barley_pub |
>IF2A_SCHPO (P56286) Eukaryotic translation initiation factor 2 alpha subunit| (eIF-2-alpha) Length = 306 Score = 100 bits (250), Expect = 3e-21 Identities = 51/112 (45%), Positives = 70/112 (62%) Frame = -1 Query: 668 RMTPQPLKIRADVEMKCFQFDGVLHIKEAMRKAEAAGNADCPVKIKLVAPPLYVLTTQTL 489 R+TPQP+KIRADVE+ CF ++G+ IK A++ AE + P+K+KLVAPPLYVL T L Sbjct: 177 RLTPQPIKIRADVEVTCFGYEGINAIKAALKAAEDVHTEEVPIKVKLVAPPLYVLLTNAL 236 Query: 488 DKDQGIAVLTNATKVCAEAIEKHKGKLVVKEAARAVSERDDKLFADTIEKLK 333 DK G+ L A ++I G VK +AVSE D+ AD ++K + Sbjct: 237 DKSLGLKKLEEAIGAIEKSITASNGTCTVKMKPKAVSETDELELADLMKKFE 288
>IF2A_HUMAN (P05198) Eukaryotic translation initiation factor 2 subunit 1| (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF-2alpha) (EIF-2A) Length = 314 Score = 94.7 bits (234), Expect = 2e-19 Identities = 44/112 (39%), Positives = 74/112 (66%) Frame = -1 Query: 668 RMTPQPLKIRADVEMKCFQFDGVLHIKEAMRKAEAAGNADCPVKIKLVAPPLYVLTTQTL 489 R+TPQ +KIRAD+E+ C+ ++G+ +KEA+R + P+KI L+APP YV+TT TL Sbjct: 182 RLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMTTTTL 241 Query: 488 DKDQGIAVLTNATKVCAEAIEKHKGKLVVKEAARAVSERDDKLFADTIEKLK 333 ++ +G++VL+ A V E IE+ +G V+ + V++ D+ A +E+L+ Sbjct: 242 ERTEGLSVLSQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQMERLE 293
>IF2A_RAT (P68101) Eukaryotic translation initiation factor 2 subunit 1| (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF-2alpha) (EIF-2A) Length = 314 Score = 94.0 bits (232), Expect = 4e-19 Identities = 44/112 (39%), Positives = 72/112 (64%) Frame = -1 Query: 668 RMTPQPLKIRADVEMKCFQFDGVLHIKEAMRKAEAAGNADCPVKIKLVAPPLYVLTTQTL 489 R+TPQ +KIRAD+E+ C+ ++G+ +KEA+R P+KI L+APP YV+TT TL Sbjct: 182 RLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTTTL 241 Query: 488 DKDQGIAVLTNATKVCAEAIEKHKGKLVVKEAARAVSERDDKLFADTIEKLK 333 ++ +G++VL A V E IE+ +G V+ + V++ D+ A +E+L+ Sbjct: 242 ERTEGLSVLNQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQLERLE 293
>IF2A_MOUSE (Q6ZWX6) Eukaryotic translation initiation factor 2 subunit 1| (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF-2alpha) (EIF-2A) Length = 314 Score = 94.0 bits (232), Expect = 4e-19 Identities = 44/112 (39%), Positives = 72/112 (64%) Frame = -1 Query: 668 RMTPQPLKIRADVEMKCFQFDGVLHIKEAMRKAEAAGNADCPVKIKLVAPPLYVLTTQTL 489 R+TPQ +KIRAD+E+ C+ ++G+ +KEA+R P+KI L+APP YV+TT TL Sbjct: 182 RLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTTTL 241 Query: 488 DKDQGIAVLTNATKVCAEAIEKHKGKLVVKEAARAVSERDDKLFADTIEKLK 333 ++ +G++VL A V E IE+ +G V+ + V++ D+ A +E+L+ Sbjct: 242 ERTEGLSVLNQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQLERLE 293
>IF2A_BOVIN (P68102) Eukaryotic translation initiation factor 2 subunit 1| (Eukaryotic translation initiation factor 2 alpha subunit) (eIF-2-alpha) (EIF-2alpha) (EIF-2A) Length = 314 Score = 94.0 bits (232), Expect = 4e-19 Identities = 44/112 (39%), Positives = 72/112 (64%) Frame = -1 Query: 668 RMTPQPLKIRADVEMKCFQFDGVLHIKEAMRKAEAAGNADCPVKIKLVAPPLYVLTTQTL 489 R+TPQ +KIRAD+E+ C+ ++G+ +KEA+R P+KI L+APP YV+TT TL Sbjct: 182 RLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTETMPIKINLIAPPRYVMTTTTL 241 Query: 488 DKDQGIAVLTNATKVCAEAIEKHKGKLVVKEAARAVSERDDKLFADTIEKLK 333 ++ +G++VL A V E IE+ +G V+ + V++ D+ A +E+L+ Sbjct: 242 ERTEGLSVLNQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQLERLE 293
>IF2A_YEAST (P20459) Eukaryotic translation initiation factor 2 alpha subunit| (eIF-2-alpha) Length = 304 Score = 93.2 bits (230), Expect = 6e-19 Identities = 49/113 (43%), Positives = 69/113 (61%) Frame = -1 Query: 668 RMTPQPLKIRADVEMKCFQFDGVLHIKEAMRKAEAAGNADCPVKIKLVAPPLYVLTTQTL 489 R+TPQ +KIRADVE+ CF ++G+ IK+A++ AE VK+KLVA PLYVLTTQ L Sbjct: 176 RLTPQAVKIRADVEVSCFSYEGIDAIKDALKSAEDMSTEQMQVKVKLVAAPLYVLTTQAL 235 Query: 488 DKDQGIAVLTNATKVCAEAIEKHKGKLVVKEAARAVSERDDKLFADTIEKLKL 330 DK +GI L +A + E I K+ G + +AV+ +D +E +L Sbjct: 236 DKQKGIEQLESAIEKITEVITKYGGVCNITMPPKAVTATEDAELQALLESKEL 288
>IF2A_DROME (P41374) Eukaryotic translation initiation factor 2 alpha subunit| (eIF-2-alpha) Length = 341 Score = 67.0 bits (162), Expect = 5e-11 Identities = 33/110 (30%), Positives = 59/110 (53%) Frame = -1 Query: 668 RMTPQPLKIRADVEMKCFQFDGVLHIKEAMRKAEAAGNADCPVKIKLVAPPLYVLTTQTL 489 ++ +KIRAD+E C+ ++G+ +K ++ K + P++I L+APPLYV+TT T Sbjct: 181 KLVSPTVKIRADIECSCYGYEGIDAVKASLTKGLELSTEELPIRINLIAPPLYVMTTSTT 240 Query: 488 DKDQGIAVLTNATKVCAEAIEKHKGKLVVKEAARAVSERDDKLFADTIEK 339 K G+ L A + ++ G+ V A + V+ D+ A +E+ Sbjct: 241 KKTDGLKALEVAIEHIRAKTSEYDGEFKVIMAPKLVTAIDEADLARRLER 290
>IF2A_METKA (Q8TY86) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 267 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/83 (27%), Positives = 41/83 (49%) Frame = -1 Query: 659 PQPLKIRADVEMKCFQFDGVLHIKEAMRKAEAAGNADCPVKIKLVAPPLYVLTTQTLDKD 480 P +KI A V++ C +GV I+EA+ K E D ++++ V P Y +T D Sbjct: 175 PGRVKIEAYVDLTCPAPNGVEIIREALEKIEEFQQGDVKMEVQYVGAPRYRITVDAPDYR 234 Query: 479 QGIAVLTNATKVCAEAIEKHKGK 411 ++ A + + +E+H G+ Sbjct: 235 TAEKMVRKAAQAAIDHVEEHGGE 257
>IF2A_ARCFU (O29723) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 267 Score = 40.4 bits (93), Expect = 0.005 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Frame = -1 Query: 659 PQPLKIRADVEMKCFQFDGVLHIKEAMRKAEAAGNADCPVKIKLVAPPLYVLTTQTLDKD 480 P+ +K+R E+K DG+ IK+A+ +A+ A +K++ V P Y + + D Sbjct: 177 PKRVKVRGYFELKSSASDGIERIKKALLEAKKALVNGVEMKLEYVGAPKYRIVVEADDYK 236 Query: 479 QGIAVLTNATKVCAEAIEKHKGK-LVVKEAA 390 VL AT+ +AI+K G+ ++EAA Sbjct: 237 TAENVLKKATENVLKAIKKLGGEGNFIREAA 267
>IF2A_HALMA (Q5UX22) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 266 Score = 38.5 bits (88), Expect = 0.018 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Frame = -1 Query: 650 LKIRADVEMKCFQFDGVLHIKEAMRKAEAAGNADCPVKIKL----VAPPLYVLTTQTLDK 483 +++ V++ C + DGV IKEA++ AE GN + P +I+L V P Y + Q D Sbjct: 173 VQVTGYVDLSCPESDGVDIIKEALQAAE--GNGEVPDEIELEVTYVGSPEYRIQVQAPDY 230 Query: 482 DQGIAVLTNATKVCAEAIEKHKG 414 L + A+ +E+H G Sbjct: 231 KTAEDALEESADRAAKVVEQHGG 253
>IF2A_METTH (O27363) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 262 Score = 38.1 bits (87), Expect = 0.024 Identities = 23/85 (27%), Positives = 44/85 (51%) Frame = -1 Query: 665 MTPQPLKIRADVEMKCFQFDGVLHIKEAMRKAEAAGNADCPVKIKLVAPPLYVLTTQTLD 486 +TP ++I V++K + +GV I++A++ A+ G + ++ V P Y L ++ D Sbjct: 175 ITPPEVQITGYVDIKSYAPNGVEIIRKALKSAQDEG-----ITVQAVGAPRYRLIVKSTD 229 Query: 485 KDQGIAVLTNATKVCAEAIEKHKGK 411 + L A + C E +EK G+ Sbjct: 230 YLKAEKQLKEAAQKCIEIVEKEGGE 254
>CLCN5_RAT (P51796) Chloride channel protein 5 (ClC-5)| Length = 746 Score = 33.9 bits (76), Expect = 0.45 Identities = 25/78 (32%), Positives = 33/78 (42%) Frame = +3 Query: 351 VRKQLVVSLAHSSSCFLHHQFPLVLFNCLCANFCCICQNCYPLVFVKCLCGQNIKRRSN* 530 V K + + LA SS L + PLV C C N C C N Y +N +R Sbjct: 192 VIKTITLVLAVSSGLSLGKEGPLVHVACCCGNILCHCFNKY---------RKNEAKRREV 242 Query: 531 LNLHRAISISSSFSFPHG 584 L+ A +S +F P G Sbjct: 243 LSAAAAAGVSVAFGAPIG 260
>CLCN5_MOUSE (Q9WVD4) Chloride channel protein 5 (ClC-5)| Length = 746 Score = 33.9 bits (76), Expect = 0.45 Identities = 25/78 (32%), Positives = 33/78 (42%) Frame = +3 Query: 351 VRKQLVVSLAHSSSCFLHHQFPLVLFNCLCANFCCICQNCYPLVFVKCLCGQNIKRRSN* 530 V K + + LA SS L + PLV C C N C C N Y +N +R Sbjct: 192 VIKTITLVLAVSSGLSLGKEGPLVHVACCCGNILCHCFNKY---------RKNEAKRREV 242 Query: 531 LNLHRAISISSSFSFPHG 584 L+ A +S +F P G Sbjct: 243 LSAAAAAGVSVAFGAPIG 260
>CLCN5_HUMAN (P51795) Chloride channel protein 5 (ClC-5)| Length = 746 Score = 33.9 bits (76), Expect = 0.45 Identities = 25/78 (32%), Positives = 33/78 (42%) Frame = +3 Query: 351 VRKQLVVSLAHSSSCFLHHQFPLVLFNCLCANFCCICQNCYPLVFVKCLCGQNIKRRSN* 530 V K + + LA SS L + PLV C C N C C N Y +N +R Sbjct: 192 VIKTITLVLAVSSGLSLGKEGPLVHVACCCGNILCHCFNKY---------RKNEAKRREV 242 Query: 531 LNLHRAISISSSFSFPHG 584 L+ A +S +F P G Sbjct: 243 LSAAAAAGVSVAFGAPIG 260
>YR692_MIMIV (Q5UNV0) Hypothetical protein R692| Length = 354 Score = 33.5 bits (75), Expect = 0.59 Identities = 15/53 (28%), Positives = 31/53 (58%) Frame = +2 Query: 14 MKTGTKPQSTVFSISAQRKANKSARLRVAYN*SISNRVKTHSSNVPPQTGGKN 172 + T T + ++S+Q AN++A + YN S+++ +++N QTGG++ Sbjct: 276 VNTNTINSTNNRNVSSQNNANRNASMATTYNNSVNSANSINTANTRSQTGGQD 328
>IF2A_METJA (Q57581) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 266 Score = 33.1 bits (74), Expect = 0.78 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = -1 Query: 650 LKIRADVEMKCFQFDGVLHIKEAMRKA-EAAGNADCPVKIKLVAPPLYVLTTQTLDKDQG 474 +++ +EMK + DG+ IK+A+ A +A D VKI + P Y + D G Sbjct: 177 VEVEGVIEMKSYAPDGIKQIKKALTTALKANPYEDVEVKITYIGAPKYRVVVIAPDYKSG 236 Query: 473 IAVLTNATKVCAEAI 429 V KVC +A+ Sbjct: 237 EEVF---KKVCEKAV 248
>DMD_CAEEL (Q9TW65) Dystrophin-1| Length = 3674 Score = 32.0 bits (71), Expect = 1.7 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Frame = +3 Query: 351 VRKQLVVSLA--HSSSCFLHHQFPLV--LFNCLCANFCCICQNCY 473 V +LV+S + H+S C + FP++ + CL C +CQNC+ Sbjct: 3290 VMHRLVISESTKHASKCNVCKMFPIIGIRYRCLTCFNCDLCQNCF 3334
>YLW6_CAEEL (P34409) Hypothetical protein F22B7.6 in chromosome III| Length = 518 Score = 31.2 bits (69), Expect = 2.9 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Frame = -1 Query: 593 IKEAMRKAEAAGNADCPVKIKLVAPPLYVLTTQTLDKDQGIAVLTNATKVCAEAIEKHKG 414 ++E +RK+ G +K+KL + + + T++L + L + K E +EK KG Sbjct: 404 LEEDVRKSGIVGGKTVTLKLKLSS---FDVLTRSLTPSDVVKSLEDIQKFSLELLEKEKG 460 Query: 413 K---LVVKEAARAVSERDDKLFADTI 345 K L+ ++ + E D+K + T+ Sbjct: 461 KEIRLLGVRLSQLIFEEDEKKRSKTV 486
>HSP7F_SCHPO (O59838) Heat shock protein homolog pss1| Length = 720 Score = 30.8 bits (68), Expect = 3.8 Identities = 19/68 (27%), Positives = 35/68 (51%) Frame = -1 Query: 530 LVAPPLYVLTTQTLDKDQGIAVLTNATKVCAEAIEKHKGKLVVKEAARAVSERDDKLFAD 351 LV Y++ Q +++ + A K E ++ K K +VK A +VS ++D+L + Sbjct: 495 LVVEQAYIVEEQEVEEPVETSPEEEAEKKTDEPVKMRKVKKLVKVADLSVSVQEDRLPTE 554 Query: 350 TIEKLKLA 327 +EK + A Sbjct: 555 VLEKYREA 562
>PLAC8_MOUSE (Q9JI48) Placenta-specific gene 8 protein (C15 protein) (Onzin)| Length = 112 Score = 29.6 bits (65), Expect = 8.6 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%) Frame = +3 Query: 432 CLCANFCCICQNCYPLVFVK--CLCGQNIKRRS 524 CLC FC C C + CLCG + R+ Sbjct: 37 CLCGTFCFTCLGCQVAADMNECCLCGTTVAMRT 69 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,326,324 Number of Sequences: 219361 Number of extensions: 1260749 Number of successful extensions: 3655 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3550 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3653 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
