ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22i22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
2dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
3gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 121 3e-24
4gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 121 3e-24
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 121 3e-24
7gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full... 52 0.002
8dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
9gb|AY107519.1| Zea mays PCO078033 mRNA sequence 52 0.002
10gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.030
11ref|XM_416865.1| PREDICTED: Gallus gallus similar to short statu... 46 0.12
12ref|XM_477999.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.47
13ref|XM_471443.1| Oryza sativa (japonica cultivar-group), predic... 42 1.9
14gb|AC025277.10| Homo sapiens chromosome 16 clone CTD-3229J4, com... 42 1.9
15gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, c... 42 1.9
16gb|AC068910.45| Mus musculus strain C57BL/6J chromosome 9 clone ... 42 1.9
17gb|AC096785.29| Mus musculus strain C57BL/6J clone rp23-382i2 ma... 42 1.9
18emb|AL731611.2|OSJN00253 Oryza sativa genomic DNA, chromosome 4,... 42 1.9
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
20gb|AF546189.1| Contiguous genomic DNA sequence comprising the 19... 42 1.9
21dbj|AK105688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
22dbj|AK065632.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
23emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on ch... 42 1.9
24gb|AC074314.29| 433m13, complete sequence 42 1.9
25emb|CR786572.20| Zebrafish DNA sequence from clone DKEY-258F14 i... 40 7.4
26emb|Z92844.3|HS435C23 Human DNA sequence from clone RP3-435C23 o... 40 7.4
27gb|AC012588.14| Homo sapiens chromosome 18, clone RP11-17A19, co... 40 7.4
28gb|AC090206.7| Homo sapiens chromosome 18, clone RP11-349H17, co... 40 7.4
29gb|AC108935.5| Homo sapiens BAC clone RP11-503L19 from 4, comple... 40 7.4
30dbj|AK163573.1| Mus musculus adult male corpora quadrigemina cDN... 40 7.4
31emb|BX682555.6| Zebrafish DNA sequence from clone DKEY-217L10 in... 40 7.4
32gb|AC152165.2| Mus musculus BAC clone RP24-159A20 from chromosom... 40 7.4
33dbj|AK045822.1| Mus musculus adult male corpora quadrigemina cDN... 40 7.4
34gb|BC049666.1| Mus musculus RIKEN cDNA 6330512M04 gene, mRNA (cD... 40 7.4
35gb|AC130462.3| Homo sapiens chromosome 16 clone CTA-67A1, comple... 40 7.4
36gb|AC034099.16| Mus Musculus Strain C57BL6/J Chromosome 7 BAC, R... 40 7.4
37dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 7.4
38gb|AY110678.1| Zea mays CL33606_1 mRNA sequence 40 7.4
39emb|CR388184.33| Zebrafish DNA sequence from clone CH211-261O3 i... 40 7.4
40ref|NM_177265.2| Mus musculus RIKEN cDNA 6330512M04 gene (633051... 40 7.4
41dbj|AP006364.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 7.4
42emb|AL603651.14| Mouse DNA sequence from clone RP23-398J2 on chr... 40 7.4 
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
            insert sequence
          Length = 1362

 Score =  127 bits (64), Expect = 4e-26
 Identities = 157/188 (83%)
 Strand = Plus / Minus

                                                                        
Query: 349  accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 408
            |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 1033 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 974

                                                                        
Query: 409  ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 468
            |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 973  ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 914

                                                                        
Query: 469  ctgcactgggctaggattttcacgcaatcctcatcactccaaaagtgtagcacaagcttg 528
            |||||||| |  | ||| ||||||||||| ||||| |||||   ||| |  |||||||||
Sbjct: 913  ctgcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttg 854

                    
Query: 529  agcatcac 536
            ||||||||
Sbjct: 853  agcatcac 846
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>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
            insert sequence
          Length = 1264

 Score =  127 bits (64), Expect = 4e-26
 Identities = 157/188 (83%)
 Strand = Plus / Minus

                                                                        
Query: 349  accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 408
            |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 1038 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 979

                                                                        
Query: 409  ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 468
            |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 978  ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 919

                                                                        
Query: 469  ctgcactgggctaggattttcacgcaatcctcatcactccaaaagtgtagcacaagcttg 528
            |||||||| |  | ||| ||||||||||| ||||| |||||   ||| |  |||||||||
Sbjct: 918  ctgcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttg 859

                    
Query: 529  agcatcac 536
            ||||||||
Sbjct: 858  agcatcac 851
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>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
              complete sequence
          Length = 147381

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                          
Query: 349    accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 408
              |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 123040 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 122981

                                                                          
Query: 409    ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 468
              |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 122980 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 122921

                                                       
Query: 469    ctgcactgggctaggattttcacgcaatcctcatcactcca 509
              |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 122920 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 122880



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 136/167 (81%)
 Strand = Plus / Minus

                                                                         
Query: 328   cgttgaccccctctcgtgttcaccatcatgagcatatccatcaggagttgggcttcaaac 387
             |||||||  ||||| || ||||||||||||||||| ||||||| ||| || ||||| |||
Sbjct: 64375 cgttgacgacctctagtattcaccatcatgagcatgtccatcatgagctgcgcttcgaac 64316

                                                                         
Query: 388   attactggccctaaggaaggtccaaccacaatctctatgattattacctttcccccctcc 447
             ||||| ||||| || || ||| ||||||  || |||||||  || | ||| || ||||||
Sbjct: 64315 attacaggccccaaagatggttcaaccaagatatctatgacaatcaacttcccgccctcc 64256

                                                            
Query: 448   tcccgcggaggaatggcctttctgcactgggctaggattttcacgca 494
             |  || | |||||| |||||| ||||||| |||||||| ||||||||
Sbjct: 64255 tttcgtgaaggaatagcctttttgcactgagctaggatcttcacgca 64209
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>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                        
Query: 349  accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 408
            |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 8789 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 8730

                                                                        
Query: 409  ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 468
            |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 8729 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 8670

                                                     
Query: 469  ctgcactgggctaggattttcacgcaatcctcatcactcca 509
            |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 8669 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 8629



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 478   gctaggattttcacgcaatcctcatcactccaa 510
             ||||||||||||||||||||||  |||||||||
Sbjct: 62050 gctaggattttcacgcaatcctggtcactccaa 62018
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Plus

                                                                            
Query: 349      accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 408
                |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 11490748 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 11490807

                                                                            
Query: 409      ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 468
                |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 11490808 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 11490867

                                                         
Query: 469      ctgcactgggctaggattttcacgcaatcctcatcactcca 509
                |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 11490868 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 11490908



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 136/167 (81%)
 Strand = Plus / Plus

                                                                            
Query: 328      cgttgaccccctctcgtgttcaccatcatgagcatatccatcaggagttgggcttcaaac 387
                |||||||  ||||| || ||||||||||||||||| ||||||| ||| || ||||| |||
Sbjct: 11549413 cgttgacgacctctagtattcaccatcatgagcatgtccatcatgagctgcgcttcgaac 11549472

                                                                            
Query: 388      attactggccctaaggaaggtccaaccacaatctctatgattattacctttcccccctcc 447
                ||||| ||||| || || ||| ||||||  || |||||||  || | ||| || ||||||
Sbjct: 11549473 attacaggccccaaagatggttcaaccaagatatctatgacaatcaacttcccgccctcc 11549532

                                                               
Query: 448      tcccgcggaggaatggcctttctgcactgggctaggattttcacgca 494
                |  || | |||||| |||||| ||||||| |||||||| ||||||||
Sbjct: 11549533 tttcgtgaaggaatagcctttttgcactgagctaggatcttcacgca 11549579



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 478      gctaggattttcacgcaatcctcatcactccaa 510
                ||||||||||||||||||||||  |||||||||
Sbjct: 11437487 gctaggattttcacgcaatcctggtcactccaa 11437519



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 226      tacgggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtc 281
                ||||| |||||||| |||||  | || | |||||||||||||||||| ||||||||
Sbjct: 11294528 tacggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11294583



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 229      gggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtcagtgaa 287
                ||||||||||| | |||   ||| ||||||| |||||||||||| ||||||||| ||||
Sbjct: 11353889 gggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaa 11353947



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 470      tgcactgggctaggattttcacgcaatcctca 501
                |||| ||||||||||| |||||| ||||||||
Sbjct: 11352249 tgcattgggctaggatcttcacgtaatcctca 11352280
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Plus

                                                                            
Query: 349      accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 408
                |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 11569937 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 11569996

                                                                            
Query: 409      ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 468
                |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 11569997 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 11570056

                                                         
Query: 469      ctgcactgggctaggattttcacgcaatcctcatcactcca 509
                |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 11570057 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 11570097



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 136/167 (81%)
 Strand = Plus / Plus

                                                                            
Query: 328      cgttgaccccctctcgtgttcaccatcatgagcatatccatcaggagttgggcttcaaac 387
                |||||||  ||||| || ||||||||||||||||| ||||||| ||| || ||||| |||
Sbjct: 11628602 cgttgacgacctctagtattcaccatcatgagcatgtccatcatgagctgcgcttcgaac 11628661

                                                                            
Query: 388      attactggccctaaggaaggtccaaccacaatctctatgattattacctttcccccctcc 447
                ||||| ||||| || || ||| ||||||  || |||||||  || | ||| || ||||||
Sbjct: 11628662 attacaggccccaaagatggttcaaccaagatatctatgacaatcaacttcccgccctcc 11628721

                                                               
Query: 448      tcccgcggaggaatggcctttctgcactgggctaggattttcacgca 494
                |  || | |||||| |||||| ||||||| |||||||| ||||||||
Sbjct: 11628722 tttcgtgaaggaatagcctttttgcactgagctaggatcttcacgca 11628768



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 478      gctaggattttcacgcaatcctcatcactccaa 510
                ||||||||||||||||||||||  |||||||||
Sbjct: 11516676 gctaggattttcacgcaatcctggtcactccaa 11516708



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 226      tacgggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtc 281
                ||||| |||||||| |||||  | || | |||||||||||||||||| ||||||||
Sbjct: 11373717 tacggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11373772



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 229      gggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtcagtgaa 287
                ||||||||||| | |||   ||| ||||||| |||||||||||| ||||||||| ||||
Sbjct: 11433078 gggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaa 11433136



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 470      tgcactgggctaggattttcacgcaatcctca 501
                |||| ||||||||||| |||||| ||||||||
Sbjct: 11431438 tgcattgggctaggatcttcacgtaatcctca 11431469
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>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA
           sequence
          Length = 770

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 492 gcaatcctcatcactccaaaagtgtagcacaagcttgagcat 533
           ||||||||| || ||||| |||||||| ||||||||||||||
Sbjct: 248 gcaatcctcgtcgctccagaagtgtagaacaagcttgagcat 207
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>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
           insert sequence
          Length = 1262

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 484 attttcacgcaatcctcatcactccaaaagtgtagcacaagcttgagcat 533
           |||||||| |||||||| ||||||||   ||| |||||||||||||||||
Sbjct: 915 attttcacacaatcctcgtcactccagtggtgaagcacaagcttgagcat 866
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>gb|AY107519.1| Zea mays PCO078033 mRNA sequence
          Length = 1299

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 343 gtgttcaccatcatgagcatatccatcaggagttgggc 380
           |||||||||||||||||||| |||||||| || |||||
Sbjct: 991 gtgttcaccatcatgagcatgtccatcagcagctgggc 954
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>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0015P05 map C53961S, complete sequence
          Length = 175121

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 226   tacgggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtc 281
             ||||| |||||||| |||||  | || | |||||||||||||||||| ||||||||
Sbjct: 80886 tacggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 80941



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                         
Query: 229    gggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtcagtgaa 287
              ||||||||||| | |||   ||| ||||||| |||||||||||| ||||||||| ||||
Sbjct: 140247 gggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaa 140305



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 470    tgcactgggctaggattttcacgcaatcctca 501
              |||| ||||||||||| |||||| ||||||||
Sbjct: 138607 tgcattgggctaggatcttcacgtaatcctca 138638
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>ref|XM_416865.1| PREDICTED: Gallus gallus similar to short stature homeobox isoform
           a; growth control factor, X-linked; pseudoautosomal
           homeobox-containing osteogenic gene (LOC418669), mRNA
          Length = 2100

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 436 tttcccccctcctcccgcggagg 458
           |||||||||||||||||||||||
Sbjct: 534 tttcccccctcctcccgcggagg 556
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>ref|XM_477999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1083

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 487 ttcacgcaatcctcatcactccaaaagtgtagcacaagcttgagca 532
           |||| ||| |||||||||||||||  |||||| |||| ||||||||
Sbjct: 821 ttcatgcagtcctcatcactccaatcgtgtaggacaaacttgagca 776
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>ref|XM_471443.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1518

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 38   cattggagcacactaacatga 58
            |||||||||||||||||||||
Sbjct: 1310 cattggagcacactaacatga 1330
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>gb|AC025277.10| Homo sapiens chromosome 16 clone CTD-3229J4, complete sequence
          Length = 189032

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 180   gaaaaataagcacctccttta 200
             |||||||||||||||||||||
Sbjct: 69396 gaaaaataagcacctccttta 69416
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>gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, complete sequence
          Length = 175721

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 60    aaacacatacatatgccaatataaa 84
             |||||||||||||||| ||||||||
Sbjct: 14370 aaacacatacatatgcaaatataaa 14346
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>gb|AC068910.45| Mus musculus strain C57BL/6J chromosome 9 clone rp23-9g9, complete
              sequence
          Length = 169984

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 77     aatataaagtgctttaatact 97
              |||||||||||||||||||||
Sbjct: 166964 aatataaagtgctttaatact 166944
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>gb|AC096785.29| Mus musculus strain C57BL/6J clone rp23-382i2 map 18, complete sequence
          Length = 201304

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 77    aatataaagtgctttaatact 97
             |||||||||||||||||||||
Sbjct: 64419 aatataaagtgctttaatact 64399
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>emb|AL731611.2|OSJN00253 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D08,
             complete sequence
          Length = 142814

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 38    cattggagcacactaacatga 58
             |||||||||||||||||||||
Sbjct: 45974 cattggagcacactaacatga 45954
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 38       cattggagcacactaacatga 58
                |||||||||||||||||||||
Sbjct: 11037319 cattggagcacactaacatga 11037299
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>gb|AF546189.1| Contiguous genomic DNA sequence comprising the 19-kDa-zein gene family
              from Zea mays, complete sequence
          Length = 116115

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 297    cttaaatagctcacaccagtg 317
              |||||||||||||||||||||
Sbjct: 109765 cttaaatagctcacaccagtg 109785
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>dbj|AK105688.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C01, full
            insert sequence
          Length = 2002

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 38   cattggagcacactaacatga 58
            |||||||||||||||||||||
Sbjct: 1578 cattggagcacactaacatga 1598
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>dbj|AK065632.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028E03, full
            insert sequence
          Length = 2023

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 38   cattggagcacactaacatga 58
            |||||||||||||||||||||
Sbjct: 1583 cattggagcacactaacatga 1603
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>emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on chromosome 9, complete
             sequence
          Length = 203615

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 77    aatataaagtgctttaatact 97
             |||||||||||||||||||||
Sbjct: 38302 aatataaagtgctttaatact 38282
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>gb|AC074314.29| 433m13, complete sequence
          Length = 209644

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 77     aatataaagtgctttaatact 97
              |||||||||||||||||||||
Sbjct: 155135 aatataaagtgctttaatact 155115
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>emb|CR786572.20| Zebrafish DNA sequence from clone DKEY-258F14 in linkage group 8,
             complete sequence
          Length = 137717

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   cctttatttttacctttaaa 214
             ||||||||||||||||||||
Sbjct: 20649 cctttatttttacctttaaa 20630
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>emb|Z92844.3|HS435C23 Human DNA sequence from clone RP3-435C23 on chromosome Xp21-22,
             complete sequence
          Length = 158849

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   cctttatttttacctttaaa 214
             ||||||||||||||||||||
Sbjct: 98669 cctttatttttacctttaaa 98688
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>gb|AC012588.14| Homo sapiens chromosome 18, clone RP11-17A19, complete sequence
          Length = 148738

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 61    aacacatacatatgccaatataaa 84
             |||| |||||||||||||||||||
Sbjct: 37283 aacaaatacatatgccaatataaa 37306
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>gb|AC090206.7| Homo sapiens chromosome 18, clone RP11-349H17, complete sequence
          Length = 91609

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 61    aacacatacatatgccaatataaa 84
             |||| |||||||||||||||||||
Sbjct: 59103 aacaaatacatatgccaatataaa 59126
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>gb|AC108935.5| Homo sapiens BAC clone RP11-503L19 from 4, complete sequence
          Length = 133531

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   cctcctttatttttaccttt 211
             ||||||||||||||||||||
Sbjct: 58662 cctcctttatttttaccttt 58681
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>dbj|AK163573.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230384C07
           product:hypothetical Interferon-induced transmembrane
           protein containing protein, full insert sequence
          Length = 1159

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 228 cgggtagacctcgatgactg 247
           ||||||||||||||||||||
Sbjct: 451 cgggtagacctcgatgactg 432
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>emb|BX682555.6| Zebrafish DNA sequence from clone DKEY-217L10 in linkage group 3,
             complete sequence
          Length = 69193

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   gaacattcccttagaaaaat 186
             ||||||||||||||||||||
Sbjct: 15225 gaacattcccttagaaaaat 15244
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>gb|AC152165.2| Mus musculus BAC clone RP24-159A20 from chromosome 5, complete sequence
          Length = 194519

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     acatgacaaacacatacata 72
              ||||||||||||||||||||
Sbjct: 172945 acatgacaaacacatacata 172964
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>dbj|AK045822.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230312J21
           product:hypothetical protein, full insert sequence
          Length = 3235

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 228 cgggtagacctcgatgactg 247
           ||||||||||||||||||||
Sbjct: 450 cgggtagacctcgatgactg 431
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>gb|BC049666.1| Mus musculus RIKEN cDNA 6330512M04 gene, mRNA (cDNA clone MGC:58491
           IMAGE:6534368), complete cds
          Length = 1184

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 228 cgggtagacctcgatgactg 247
           ||||||||||||||||||||
Sbjct: 439 cgggtagacctcgatgactg 420
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>gb|AC130462.3| Homo sapiens chromosome 16 clone CTA-67A1, complete sequence
          Length = 191594

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     actacaagcacacaccattg 42
              ||||||||||||||||||||
Sbjct: 120170 actacaagcacacaccattg 120151
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>gb|AC034099.16| Mus Musculus Strain C57BL6/J Chromosome 7 BAC, RP23-145I16, complete
             sequence
          Length = 229553

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   cgggtagacctcgatgactg 247
             ||||||||||||||||||||
Sbjct: 36179 cgggtagacctcgatgactg 36160
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 379     gcttcaaacattactggccctaag 402
               |||||||||||| |||||||||||
Sbjct: 1998540 gcttcaaacatttctggccctaag 1998563
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>gb|AY110678.1| Zea mays CL33606_1 mRNA sequence
          Length = 830

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 463 gcctttctgcactgggctaggattttcacgcaatcctcatcact 506
           ||||| ||||| | ||| ||||| |||||||| |||||||||||
Sbjct: 570 gccttcctgcagttggcaaggatcttcacgcagtcctcatcact 613
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>emb|CR388184.33| Zebrafish DNA sequence from clone CH211-261O3 in linkage group 8,
              complete sequence
          Length = 180216

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 198    ttatttttacctttaaagcacaat 221
              ||||||||| ||||||||||||||
Sbjct: 106666 ttatttttaactttaaagcacaat 106689
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>ref|NM_177265.2| Mus musculus RIKEN cDNA 6330512M04 gene (6330512M04Rik), mRNA
          Length = 3235

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 228 cgggtagacctcgatgactg 247
           ||||||||||||||||||||
Sbjct: 450 cgggtagacctcgatgactg 431
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>dbj|AP006364.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT28B04, TM0170,
             complete sequence
          Length = 101172

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   tgaagcaactaatctttata 143
             ||||||||||||||||||||
Sbjct: 82781 tgaagcaactaatctttata 82800
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>emb|AL603651.14| Mouse DNA sequence from clone RP23-398J2 on chromosome 7, complete
              sequence
          Length = 205942

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 228    cgggtagacctcgatgactg 247
              ||||||||||||||||||||
Sbjct: 164428 cgggtagacctcgatgactg 164409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,324,583
Number of Sequences: 3902068
Number of extensions: 5324583
Number of successful extensions: 105386
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105168
Number of HSP's gapped (non-prelim): 216
length of query: 543
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 520
effective length of database: 17,143,297,704
effective search space: 8914514806080
effective search space used: 8914514806080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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