ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22i20 |
|---|---|
| Clone Library Name | barley_pub |
>SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor| Length = 1093 Score = 31.2 bits (69), Expect = 1.6 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = +3 Query: 90 LNYQT*KANSPSRCSYLPQN*SGSVISRVFESYTITVLQFA 212 L+ T K N +RC Y P++ S +VIS E Y TV+ F+ Sbjct: 158 LSRTTEKINGVARCPYDPRHNSTAVISSQGELYAATVIDFS 198
>RPA9_YEAST (P32529) DNA-directed RNA polymerase I 13.7 kDa polypeptide (EC| 2.7.7.6) (A12.2) Length = 125 Score = 31.2 bits (69), Expect = 1.6 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = -2 Query: 328 INDVLILKGPCPNCGTENLSFYGTILSIESGGATNNVKCANC 203 + D +K CP CG E ++++ L GAT C +C Sbjct: 76 LKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSC 117
>MRH4_KLULA (Q6CWQ5) ATP-dependent RNA helicase MRH4, mitochondrial precursor| (EC 3.6.1.-) Length = 584 Score = 30.4 bits (67), Expect = 2.8 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = +3 Query: 285 PQFGQGPFRIKTSFIMALVTTCAVTNIRGKAAKY-VNMKPKGSGNWNTLTSKPVSS 449 P F + P+ K+ FI AV+ G + K + KP+ WNT PV + Sbjct: 3 PVFSRFPYASKSGFISLASRGYAVSRNSGSSIKSNLRSKPRADTRWNTKAKPPVKN 58
>RS27_SULSO (Q97Z80) 30S ribosomal protein S27e| Length = 66 Score = 30.4 bits (67), Expect = 2.8 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = -2 Query: 310 LKGPCPNCGTENLSFYGTILSIESGGATNNVKCANCKTVMVY 185 L+ CPNCG E F AT V+C +C T +VY Sbjct: 17 LRVKCPNCGNEQTIF---------SHATFPVRCLSCGTELVY 49
>NAPA_PSEAE (Q9I4G3) Periplasmic nitrate reductase precursor (EC 1.7.99.4)| Length = 829 Score = 30.0 bits (66), Expect = 3.6 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -2 Query: 412 PEPFGFIFTYFAALPLILVTAQVVTKAIINDVLILKGPCPNCGT 281 P PF A LP+++ + +VT+A + ++ K PC CGT Sbjct: 8 PPPFA---AAAAGLPILVRASNLVTEADVTSLVWNKAPCRFCGT 48
>SEM5B_MOUSE (Q60519) Semaphorin-5B precursor (Semaphorin G) (Sema G)| Length = 1093 Score = 30.0 bits (66), Expect = 3.6 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +3 Query: 108 KANSPSRCSYLPQN*SGSVISRVFESYTITVLQFA 212 K N +RC Y P++ S +VIS E Y TV+ F+ Sbjct: 164 KINGVARCPYDPRHNSTAVISSQGELYAATVIDFS 198
>RS27_SULTO (Q973F9) 30S ribosomal protein S27e| Length = 66 Score = 29.6 bits (65), Expect = 4.7 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = -2 Query: 298 CPNCGTENLSFYGTILSIESGGATNNVKCANCKTVMVY 185 CPNCG E F AT V+C +C T +VY Sbjct: 21 CPNCGNEQTVF---------SHATFPVRCLSCGTQLVY 49
>RPA12_MOUSE (Q791N7) DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6)| (Nuclear RNA polymerase I small specific subunit Rpa12) (Zinc ribbon domain-containing protein 1) Length = 123 Score = 29.3 bits (64), Expect = 6.2 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%) Frame = -2 Query: 310 LKGP-----CPNCGTENLSFYGTILSIESGGATNNVKCANCK 200 L+GP CP CG E ++++ + G T C NCK Sbjct: 75 LQGPVIDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCINCK 116
>LGT_FRATT (Q5NFK6) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 268 Score = 29.3 bits (64), Expect = 6.2 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = -2 Query: 478 VALGLFFFIDELTGFEVNVFQFPEP-FGFIFTYFAALPLILVTAQVVTKAIINDVLILK 305 + LGLF F+ F F+ P+P +G+IF + + IL ++ A+I + +K Sbjct: 201 LVLGLFMFLYGCARFICEFFRQPDPQYGYIFFNWMTMGQILSIPMILLGAVILIAVFIK 259
>PRMA_AGRT5 (Q8UDP9) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 292 Score = 28.9 bits (63), Expect = 8.1 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = -2 Query: 454 IDELTGFEVNVFQFPEPFGFIFTYFAALPLILVTAQVVTKAIINDVLILKG 302 ++ GF + F+ PF I A PLI + Q+VT +IL G Sbjct: 205 LETAPGFHSDAFRKHGPFDLIIANILARPLIKMAPQLVTHLAPGGTVILSG 255
>PLLP_RAT (P47987) Plasmolipin (Plasma membrane proteolipid)| Length = 182 Score = 28.9 bits (63), Expect = 8.1 Identities = 20/77 (25%), Positives = 35/77 (45%) Frame = -2 Query: 466 LFFFIDELTGFEVNVFQFPEPFGFIFTYFAALPLILVTAQVVTKAIINDVLILKGPCPNC 287 + FFI L + ++ P P + +F A ++ +TA V A + D+ L+G P Sbjct: 81 IVFFIIYLFQLHMKLYMVPWPL-VLLVFFVAATVLYITAFVACAAAV-DLTSLRGSRPYN 138 Query: 286 GTENLSFYGTILSIESG 236 SF+ ++ I G Sbjct: 139 QRSAASFFACLVMIAYG 155
>RPA12_MACMU (Q5TM50) DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6)| (Nuclear RNA polymerase I small specific subunit Rpa12) (Zinc ribbon domain-containing protein 1) Length = 126 Score = 28.9 bits (63), Expect = 8.1 Identities = 11/33 (33%), Positives = 16/33 (48%) Frame = -2 Query: 298 CPNCGTENLSFYGTILSIESGGATNNVKCANCK 200 CP CG E ++++ + G T C NCK Sbjct: 87 CPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
>RPA12_HUMAN (Q9P1U0) DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6)| (Nuclear RNA polymerase I small specific subunit Rpa12) (Zinc ribbon domain-containing protein 1) Length = 126 Score = 28.9 bits (63), Expect = 8.1 Identities = 11/33 (33%), Positives = 16/33 (48%) Frame = -2 Query: 298 CPNCGTENLSFYGTILSIESGGATNNVKCANCK 200 CP CG E ++++ + G T C NCK Sbjct: 87 CPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,048,441 Number of Sequences: 219361 Number of extensions: 1306336 Number of successful extensions: 3290 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3203 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3288 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
