ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags22i16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC104285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0035J08, complete sequence Length = 117555 Score = 83.8 bits (42), Expect = 6e-13 Identities = 48/50 (96%) Strand = Plus / Plus Query: 144 ttctgtttcctcatcatcggcgttctggttaccgtatctccagccatctt 193 ||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 65609 ttctgtttcctcatcatcggcattctggttaccatatctccagccatctt 65658 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 451 tgttcagggtgctgagtcttgaaatggaggttgagtttgtaaccgtggatgtaggctttc 510 |||||||| |||||||| || | ||| ||||| | |||||||| ||| |||||||||||| Sbjct: 65937 tgttcaggatgctgagtttttagatgaaggttcaatttgtaactgtgaatgtaggctttc 65996 Query: 511 ccacagccttcataggggcagacataagggcgctcag 547 ||||| || ||||| ||||||||||| || ||||||| Sbjct: 65997 ccacaaccatcatatgggcagacatatggtcgctcag 66033
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 83.8 bits (42), Expect = 6e-13 Identities = 48/50 (96%) Strand = Plus / Plus Query: 144 ttctgtttcctcatcatcggcgttctggttaccgtatctccagccatctt 193 ||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 290089 ttctgtttcctcatcatcggcattctggttaccatatctccagccatctt 290138 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 451 tgttcagggtgctgagtcttgaaatggaggttgagtttgtaaccgtggatgtaggctttc 510 |||||||| |||||||| || | ||| ||||| | |||||||| ||| |||||||||||| Sbjct: 290417 tgttcaggatgctgagtttttagatgaaggttcaatttgtaactgtgaatgtaggctttc 290476 Query: 511 ccacagccttcataggggcagacataagggcgctcag 547 ||||| || ||||| ||||||||||| || ||||||| Sbjct: 290477 ccacaaccatcatatgggcagacatatggtcgctcag 290513
>dbj|AK103444.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129E14, full insert sequence Length = 1578 Score = 83.8 bits (42), Expect = 6e-13 Identities = 48/50 (96%) Strand = Plus / Minus Query: 144 ttctgtttcctcatcatcggcgttctggttaccgtatctccagccatctt 193 ||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 1320 ttctgtttcctcatcatcggcattctggttaccatatctccagccatctt 1271 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Minus Query: 451 tgttcagggtgctgagtcttgaaatggaggttgagtttgtaaccgtggatgtaggctttc 510 |||||||| |||||||| || | ||| ||||| | |||||||| ||| |||||||||||| Sbjct: 992 tgttcaggatgctgagtttttagatgaaggttcaatttgtaactgtgaatgtaggctttc 933 Query: 511 ccacagccttcataggggcagacataagggcgctcag 547 ||||| || ||||| ||||||||||| || ||||||| Sbjct: 932 ccacaaccatcatatgggcagacatatggtcgctcag 896
>dbj|AK060463.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-C07, full insert sequence Length = 682 Score = 83.8 bits (42), Expect = 6e-13 Identities = 48/50 (96%) Strand = Plus / Minus Query: 144 ttctgtttcctcatcatcggcgttctggttaccgtatctccagccatctt 193 ||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 409 ttctgtttcctcatcatcggcattctggttaccatatctccagccatctt 360 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 451 tgttcagggtgctgagtcttgaaatggaggttgagtttgtaaccgtggatgtaggctttc 510 |||||||| |||||||| || | ||| ||||| | |||||||| ||| |||||||||||| Sbjct: 81 tgttcaggatgctgagtttttagatgaaggttcaatttgtaactgtgaatgtaggctttc 22 Query: 511 ccacagccttcataggggcag 531 ||||| || ||||| |||||| Sbjct: 21 ccacaaccatcatatgggcag 1
>emb|AL121943.22|HSDJ258L1 Human DNA sequence from clone RP1-258L1 on chromosome 6q23.1-23.3, complete sequence Length = 43782 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 547 gaggaaaagcttggtggtgtgggtg 571 ||||||||||||||||||||||||| Sbjct: 19909 gaggaaaagcttggtggtgtgggtg 19885
>emb|AL137781.18| Human DNA sequence from clone RP11-263K14 on chromosome 13q22.3-31.3, complete sequence Length = 147978 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 134 cttcatcttcttctgtttcctca 156 ||||||||||||||||||||||| Sbjct: 43427 cttcatcttcttctgtttcctca 43405
>gb|AC024797.1| Caenorhabditis elegans cosmid Y48G8AR, complete sequence Length = 46975 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 136 tcatcttcttctgtttcctcatcatc 161 |||||||||||| ||||||||||||| Sbjct: 39340 tcatcttcttctttttcctcatcatc 39365
>ref|XM_674705.1| Plasmodium berghei strain ANKA hypothetical protein (PB001251.02.0) partial mRNA Length = 792 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 136 tcatcttcttctgtttcctcatcatc 161 ||||||||||||||| |||||||||| Sbjct: 767 tcatcttcttctgttacctcatcatc 742 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 136 tcatcttcttctgtttcctcatcatc 161 ||||||||||||||| |||||||||| Sbjct: 704 tcatcttcttctgttacctcatcatc 679 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 136 tcatcttcttctgtttcctcatcatc 161 ||||||||||||||| |||||||||| Sbjct: 683 tcatcttcttctgttacctcatcatc 658
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 139 tcttcttctgtttcctcatcatcggc 164 |||||||||||||||||| ||||||| Sbjct: 581031 tcttcttctgtttcctcaacatcggc 581056
>gb|AC068654.2| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar Nipponbare Clone OSJNBa0015O22 From Chromosome 10, complete sequence Length = 189349 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 139 tcttcttctgtttcctcatcatcggc 164 |||||||||||||||||| ||||||| Sbjct: 48639 tcttcttctgtttcctcaacatcggc 48664
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 139 tcttcttctgtttcctcatcatcggc 164 |||||||||||||||||| ||||||| Sbjct: 581031 tcttcttctgtttcctcaacatcggc 581056
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 139 tcttcttctgtttcctcatcatcggc 164 |||||||||||||||||| ||||||| Sbjct: 581028 tcttcttctgtttcctcaacatcggc 581053
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 ttcttctgtttcctcatcatc 161 ||||||||||||||||||||| Sbjct: 571425 ttcttctgtttcctcatcatc 571405
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 ttcttctgtttcctcatcatc 161 ||||||||||||||||||||| Sbjct: 571241 ttcttctgtttcctcatcatc 571221
>ref|XM_725977.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03103) partial mRNA Length = 1833 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 atcttcatcttcttctgtttc 152 ||||||||||||||||||||| Sbjct: 1131 atcttcatcttcttctgtttc 1111
>ref|XM_665853.1| Plasmodium berghei strain ANKA hypothetical protein (PB000017.01.0) partial mRNA Length = 657 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 atcttcatcttcttctgtttc 152 ||||||||||||||||||||| Sbjct: 558 atcttcatcttcttctgtttc 538
>emb|AL365179.30| Human DNA sequence from clone RP13-34C21 on chromosome Xq24-25 Contains a chromobox homolog 1 (HP1 beta homolog Drosophila) (CBX1) pseudogene and a CpG island, complete sequence Length = 180851 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 246 catacccttgcctggccactg 266 ||||||||||||||||||||| Sbjct: 134642 catacccttgcctggccactg 134662
>emb|AL355881.15| Human DNA sequence from clone RP11-332B14 on chromosome 6 Contains part of the SGK gene for serum/glucocorticoid regulated kinase and a keratin 8 (KRT8) pseudogene, complete sequence Length = 42304 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 acttactaaaaggaagcagac 57 ||||||||||||||||||||| Sbjct: 32812 acttactaaaaggaagcagac 32832
>gb|AF142322.1|AF142322 Zea mays putative transcription repressor maize TRM protein (trm) mRNA, complete cds Length = 1220 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 523 taggggcagacataagggcgctcag 547 ||||||||||| ||||||||||||| Sbjct: 719 taggggcagacgtaagggcgctcag 695
>dbj|AB159602.1| Babesia equi Be158 mRNA, complete cds Length = 3561 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 136 tcatcttcttctgtttcctcatcat 160 |||| |||||||||||||||||||| Sbjct: 2947 tcatgttcttctgtttcctcatcat 2923
>ref|NM_100802.3| Arabidopsis thaliana RNA binding AT1G09320 mRNA, complete cds Length = 2007 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 atcttcatcttcttctgtttcctc 155 |||||| ||||||||||||||||| Sbjct: 688 atcttcctcttcttctgtttcctc 665
>ref|XM_635447.1| Dictyostelium discoideum SART-1 family protein (DDB0216406), partial mRNA Length = 2067 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 130 taatcttcatcttcttctgtttcctcatcatc 161 ||||||||||||||||| |||| |||||||| Sbjct: 1577 taatcttcatcttcttcattttcgtcatcatc 1546
>gb|AC116107.10| Mus musculus chromosome 1, clone RP23-28F18, complete sequence Length = 262581 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 aaggaagcagacaaccacat 65 |||||||||||||||||||| Sbjct: 82960 aaggaagcagacaaccacat 82979
>gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 241022 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tcttcatcttcttctgtttc 152 |||||||||||||||||||| Sbjct: 170758 tcttcatcttcttctgtttc 170739
>ref|XM_755022.1| Ustilago maydis 521 hypothetical protein (UM03968.1) partial mRNA Length = 2439 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 568 ggtgcagaaagctttggggt 587 |||||||||||||||||||| Sbjct: 472 ggtgcagaaagctttggggt 453
>gb|AC132943.2| Mus musculus BAC clone RP24-267L11 from chromosome 2, complete sequence Length = 180633 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 atcttcatcttcttctgttt 151 |||||||||||||||||||| Sbjct: 91734 atcttcatcttcttctgttt 91715
>emb|Z11505.1|CEF59B2 Caenorhabditis elegans Cosmid F59B2, complete sequence Length = 43782 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 tccagctaatcttcatcttcttct 147 |||||| ||||||||||||||||| Sbjct: 23834 tccagcaaatcttcatcttcttct 23857
>gb|AC131709.3| Mus musculus BAC clone RP23-198J15 from 18, complete sequence Length = 164456 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 576 aagctttggggttgcttgta 595 |||||||||||||||||||| Sbjct: 83881 aagctttggggttgcttgta 83862
>gb|AC096553.1| Homo sapiens BAC clone RP11-43P15 from 7, complete sequence Length = 66229 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 tggatgtaggctttcccaca 515 |||||||||||||||||||| Sbjct: 8917 tggatgtaggctttcccaca 8898
>emb|AL360173.15| Human DNA sequence from clone RP11-75F12 on chromosome Xq21.31-22.2, complete sequence Length = 105507 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 cacaatgtccagctaatctt 136 |||||||||||||||||||| Sbjct: 46978 cacaatgtccagctaatctt 46959
>emb|AL133519.28| Human DNA sequence from clone RP11-122O1 on chromosome 20 Contains the VIAAT gene for vesicular inhibitory amino acid transporter, the ACTR5 gene for ARP5 actin-related protein 5 homolog (yeast) and three CpG islands, complete sequence Length = 96299 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 tcttcatcttcttctgtttcctca 156 ||||| |||||||||||||||||| Sbjct: 74370 tcttcttcttcttctgtttcctca 74393
>gb|AC158572.3| Mus musculus chromosome 7, clone RP24-402J3, complete sequence Length = 171722 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ttcatcttcttctgtttcct 154 |||||||||||||||||||| Sbjct: 118203 ttcatcttcttctgtttcct 118184
>emb|AL645532.16| Mouse DNA sequence from clone RP23-295E4 on chromosome 11 Contains two novel genes, the 3' end of the Egfr gene for epidermal growth factor receptor and the gene for a novel F-box domain containing protein, complete sequence Length = 161348 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 130 taatcttcatcttcttctgtttcctcatcatc 161 ||||| |||||||||||| |||| |||||||| Sbjct: 34951 taatcatcatcttcttctttttcatcatcatc 34982
>emb|AL035477.6|PFMAL4P4 Plasmodium falciparum MAL4P4 Length = 272698 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 133 tcttcatcttcttctgtttcctcatcat 160 ||||||||||||||| ||||||||||| Sbjct: 128998 tcttcatcttcttcttcttcctcatcat 128971
>emb|BX546478.12| Zebrafish DNA sequence from clone DKEYP-115B3 in linkage group 17, complete sequence Length = 131670 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tgctagttttagcatacacg 34 |||||||||||||||||||| Sbjct: 2131 tgctagttttagcatacacg 2112
>gb|AC116903.3| Homo sapiens chromosome 15, clone RP11-152L20, complete sequence Length = 159893 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tcttcatcttcttctgtttc 152 |||||||||||||||||||| Sbjct: 11279 tcttcatcttcttctgtttc 11260
>gb|AC123983.8| Pan troglodytes clone rp43-42n4, complete sequence Length = 187806 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tcttcatcttcttctgtttc 152 |||||||||||||||||||| Sbjct: 87521 tcttcatcttcttctgtttc 87502
>gb|AF168681.1| Homo sapiens CRIM1 protein gene, partial cds; and FEZ2 gene, partial sequence Length = 236303 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 atgtcagtaaagaggaaaggcaca 120 ||||||||||||||||||| |||| Sbjct: 76406 atgtcagtaaagaggaaagacaca 76383
>gb|AC015584.18| Mus musculus, clone RP23-400H17, complete sequence Length = 214875 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 atcttcatcttcttctgttt 151 |||||||||||||||||||| Sbjct: 70 atcttcatcttcttctgttt 51
>ref|NM_066596.2| Caenorhabditis elegans F59B2.11 (F59B2.11) mRNA, complete cds Length = 1773 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 tccagctaatcttcatcttcttct 147 |||||| ||||||||||||||||| Sbjct: 1675 tccagcaaatcttcatcttcttct 1698
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 130 taatcttcatcttcttctgtttcctcatcatc 161 |||||||||||||||||| |||| || ||||| Sbjct: 17890136 taatcttcatcttcttctttttcttcttcatc 17890167
>emb|BX813758.1|CNS0ADTR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB38ZF02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2006 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 atcttcatcttcttctgtttcctc 155 |||||| ||||||||||||||||| Sbjct: 687 atcttcctcttcttctgtttcctc 664
>gb|BT022112.1| Arabidopsis thaliana At1g09320 mRNA, complete cds Length = 1936 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 atcttcatcttcttctgtttcctc 155 |||||| ||||||||||||||||| Sbjct: 672 atcttcctcttcttctgtttcctc 649
>gb|AC155837.7| Mus musculus 6 BAC RP24-409L6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 156886 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 537 agggcgctcagaggaaaagcttgg 560 |||||||||||||| ||||||||| Sbjct: 151505 agggcgctcagagggaaagcttgg 151482
>gb|AC007378.4| Homo sapiens BAC clone RP11-78I14 from 2, complete sequence Length = 179357 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 atgtcagtaaagaggaaaggcaca 120 ||||||||||||||||||| |||| Sbjct: 102756 atgtcagtaaagaggaaagacaca 102779
>gb|AC116162.5| Homo sapiens chromosome 15, clone RP11-268L17, complete sequence Length = 160580 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tcttcatcttcttctgtttc 152 |||||||||||||||||||| Sbjct: 115916 tcttcatcttcttctgtttc 115897
>dbj|AK176493.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-31-C18 Length = 1938 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 atcttcatcttcttctgtttcctc 155 |||||| ||||||||||||||||| Sbjct: 699 atcttcctcttcttctgtttcctc 676
>dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_B06 Length = 99637 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 130 taatcttcatcttcttctgtttcctcatcatc 161 |||||||||||||||||| |||| || ||||| Sbjct: 24769 taatcttcatcttcttctttttcttcttcatc 24800
>dbj|AP005069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654A08 Length = 154812 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 130 taatcttcatcttcttctgtttcctcatcatc 161 |||||||||||||||||| |||| || ||||| Sbjct: 129667 taatcttcatcttcttctttttcttcttcatc 129698
>gb|AC006416.2|T31J12 Arabidopsis thaliana chromosome 1 BAC T31J12 sequence, complete sequence Length = 16549 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 atcttcatcttcttctgtttcctc 155 |||||| ||||||||||||||||| Sbjct: 9617 atcttcctcttcttctgtttcctc 9640
>emb|AL928644.12| Mouse DNA sequence from clone RP23-313J15 on chromosome 2, complete sequence Length = 219870 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 atcttcatcttcttctgttt 151 |||||||||||||||||||| Sbjct: 48127 atcttcatcttcttctgttt 48108
>gb|AC004447.1|AC004447 Homo sapiens chromosome 19, overlapping cosmids R27918 and R33775, complete sequence Length = 73007 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ggtttgtcttgctccttttc 369 |||||||||||||||||||| Sbjct: 56087 ggtttgtcttgctccttttc 56068
>gb|AC122284.5| Mus musculus BAC clone RP23-246A5 from 6, complete sequence Length = 189521 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 537 agggcgctcagaggaaaagcttgg 560 |||||||||||||| ||||||||| Sbjct: 28244 agggcgctcagagggaaagcttgg 28221
>gb|AC137515.3| Mus musculus BAC clone RP23-258C20 from 1, complete sequence Length = 215582 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 aaggaagcagacaaccacat 65 |||||||||||||||||||| Sbjct: 51045 aaggaagcagacaaccacat 51026
>gb|AC093316.28| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202i7, complete sequence Length = 226567 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tcttcatcttcttctgtttc 152 |||||||||||||||||||| Sbjct: 137642 tcttcatcttcttctgtttc 137661
>dbj|AP004967.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT27L02, TM0144, complete sequence Length = 89959 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 tcttctgtttcctcatcatc 161 |||||||||||||||||||| Sbjct: 78720 tcttctgtttcctcatcatc 78701
>gb|AF480890.3| Acanthamoeba castellanii metacaspase (MCASP1) mRNA, complete cds Length = 1658 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 134 cttcatcttcttctgtttcctcatcatc 161 ||||||||||||||| ||| |||||||| Sbjct: 1173 cttcatcttcttctgcttcttcatcatc 1146 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,881,432 Number of Sequences: 3902068 Number of extensions: 4881432 Number of successful extensions: 106242 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105924 Number of HSP's gapped (non-prelim): 318 length of query: 600 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 577 effective length of database: 17,143,297,704 effective search space: 9891682775208 effective search space used: 9891682775208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
