ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22i09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYF5_CHICK (Q08856) Myogenic factor 5 (Myf-5) 32 2.2
2AT8A2_HUMAN (Q9NTI2) Probable phospholipid-transporting ATPase I... 31 3.8
3PRTN3_MOUSE (Q61096) Myeloblastin precursor (EC 3.4.21.76) (Prot... 30 5.0

>MYF5_CHICK (Q08856) Myogenic factor 5 (Myf-5)|
          Length = 258

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = +3

Query: 474 CYAPPDIPIERKSCLVIPRLQHVRSLTPR*LPPFLGPTDASPAC 605
           C   P       SCL  P  +      PR LPPF  P    PAC
Sbjct: 7   CQFSPSELFYDSSCLSSPEGEFPEDFEPRELPPFGAPAPTEPAC 50



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>AT8A2_HUMAN (Q9NTI2) Probable phospholipid-transporting ATPase IB (EC 3.6.3.1)|
           (ATPase class I type 8A member 2) (ML-1)
          Length = 1148

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 406 LAGVYYGRISHLGKPKPSSKKNCAMPPPIS 495
           +AGV YG    L + +PSS   C MPPP S
Sbjct: 405 IAGVTYGHFPELAR-EPSSDDFCRMPPPCS 433



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>PRTN3_MOUSE (Q61096) Myeloblastin precursor (EC 3.4.21.76) (Proteinase 3)|
           (PR-3)
          Length = 254

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 265 PRQDTTVGKGT*SIEPGWIRAGIVAPIP 182
           P+QD T+ +GT  +  GW R G  AP P
Sbjct: 142 PQQDQTLSQGTQCLAMGWGRLGTQAPTP 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,203,851
Number of Sequences: 219361
Number of extensions: 2535408
Number of successful extensions: 5528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5528
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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