Clone Name	rbags22i03
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	dbj|AK104932.1| Oryza sativa (japonica cultivar-group) cDNA clon...	341	2e-90
2	ref|NM_192312.1| Oryza sativa (japonica cultivar-group), predic...	339	6e-90
3	dbj|AK069337.1| Oryza sativa (japonica cultivar-group) cDNA clon...	333	4e-88
4	gb|AY568720.1| Lycopersicon esculentum putative anion:sodium sym...	149	1e-32
5	ref|NM_179758.2| Arabidopsis thaliana bile acid:sodium symporter...	137	5e-29
6	gb|AF498303.1| Arabidopsis thaliana putative sodium-dependent bi...	137	5e-29
7	emb|BX821670.1|CNS0A947 Arabidopsis thaliana Full-length cDNA Co...	137	5e-29
8	gb|BT003925.1| Arabidopsis thaliana clone RAFL15-23-I10 (R20694)...	137	5e-29
9	dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...	129	1e-26
10	dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic D...	129	1e-26
11	gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 ma...	92	2e-15
12	emb|BX821429.1|CNS0A9AK Arabidopsis thaliana Full-length cDNA Co...	80	1e-11
13	gb|AC140916.17| Medicago truncatula clone mth2-12b2, complete se...	44	0.52
14	emb|BX571774.9| Zebrafish DNA sequence from clone DKEY-250A19 in...	44	0.52
15	gb|AC112507.7| Homo sapiens 3 BAC RP11-321C3 (Roswell Park Cance...	44	0.52
16	gb|AC096735.3| Homo sapiens BAC clone RP11-135M12 from 4, comple...	44	0.52
17	gb|AC159424.1| Trypanosoma brucei chromosome 6 clone RPCI93-26F1...	42	2.1
18	gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence	42	2.1
19	gb|AC079606.6| Trypanosoma brucei chromosome 2 clone RPCI93-3B10...	42	2.1
20	gb|AC073246.5| Trypanosoma brucei chromosome 2 clone RPCI93-25N2...	42	2.1
21	gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence	42	2.1
22	gb|AE002135.1| Ureaplasma parvum serovar 3 str. ATCC 700970 sect...	42	2.1
23	ref|XM_841290.1| Trypanosoma brucei TREU927 retrotransposon hot ...	42	2.1
24	ref|XM_946386.1| Trypanosoma brucei TREU927 retrotransposon hot ...	42	2.1
25	ref|XM_946390.1| Trypanosoma brucei TREU927 retrotransposon hot ...	42	2.1
26	ref|XM_946391.1| Trypanosoma brucei TREU927 retrotransposon hot ...	42	2.1
27	ref|XM_946393.1| Trypanosoma brucei TREU927 retrotransposon hot ...	42	2.1
28	ref|XM_946404.1| Trypanosoma brucei TREU927 retrotransposon hot ...	42	2.1
29	emb|BX248585.1| Blochmannia floridanus complete genome; segment 2/3	42	2.1
30	emb|AL671259.1|TBH25N7 Trypanosoma brucei 221 VSG expression sit...	42	2.1
31	emb|AL671256.1|TBN19B2 Trypanosoma brucei VO2 VSG expression sit...	42	2.1
32	gb|AY046890.1| Trypanosoma brucei RHS4a (RHS4a) gene, complete cds	42	2.1
33	gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome	42	2.1
34	gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-1...	40	8.2
35	gb|AC105966.11| Mus musculus chromosome 3, clone RP23-403H2, com...	40	8.2
36	gb|AC169819.2| Rhesus Macaque BAC CH250-132C22 (Children's Hosp...	40	8.2
37	gb|AC164077.5| Mus musculus chromosome 3, clone RP24-352M15, com...	40	8.2
38	gb|AC112979.9| Mus musculus chromosome 3, clone RP24-530C22, com...	40	8.2
39	gb|AC130483.6| Mus musculus chromosome 15, clone RP24-137D10, co...	40	8.2
40	gb|AE017263.1| Mesoplasma florum L1 complete genome	40	8.2
41	gb|AC165233.6| Mus musculus chromosome 8, clone RP23-307O2, comp...	40	8.2
42	gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, comp...	40	8.2
43	gb|AC161183.10| Mus musculus chromosome 3, clone RP23-172P6, com...	40	8.2
44	gb|AC101984.13| Mus musculus chromosome 10, clone RP24-352K10, c...	40	8.2
45	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	40	8.2
46	ref|XM_382306.1| Gibberella zeae PH-1 chromosome 1 hypothetical ...	40	8.2
47	gb|AC122933.4| Mus musculus BAC clone RP23-18P3 from 14, complet...	40	8.2
48	emb|AL031663.2|HS461P17 Human DNA sequence from clone RP3-461P17...	40	8.2
49	emb|AL590965.17| Human DNA sequence from clone RP11-185B12 on ch...	40	8.2
50	emb|AL391868.16| Human DNA sequence from clone RP11-422N19 on ch...	40	8.2
51	emb|AL356095.11| Human DNA sequence from clone RP11-369J21 on ch...	40	8.2
52	gb|AE017160.1| Chlamydophila pneumoniae TW-183, section 4 of 4 o...	40	8.2
53	emb|AL050320.19|HSJ1077I2 Human DNA sequence from clone RP5-1077...	40	8.2
54	gb|AC159975.4| Mus musculus chromosome 3, clone RP24-204F16, com...	40	8.2
55	emb|AL021452.20|HS285F3 Human DNA sequence from clone CTA-285F3 ...	40	8.2
56	ref|XM_961740.1| PREDICTED: Tribolium castaneum similar to CG125...	40	8.2
57	gb|AC111062.13| Mus musculus chromosome 3, clone RP24-100J21, co...	40	8.2
58	emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, B...	40	8.2
59	gb|AC026130.15| Homo sapiens chromosome 17, clone RP11-801J18, c...	40	8.2
60	gb|AC025518.8| Homo sapiens chromosome 17, clone RP11-713H12, co...	40	8.2
61	gb|AC145335.15| Pan troglodytes clone rp43-26k12, complete sequence	40	8.2
62	emb|BX537314.17| Zebrafish DNA sequence from clone CH211-120E1 i...	40	8.2
63	gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome	40	8.2
64	gb|AC159214.2| Pan troglodytes BAC clone CH251-522M3 from chromo...	40	8.2
65	dbj|AK034519.1| Mus musculus adult male diencephalon cDNA, RIKEN...	40	8.2
66	gb|AF116276.1|AF116276 Trichomonas vaginalis surface immunogen P...	40	8.2
67	gb|AE002098.2| Neisseria meningitidis MC58, complete genome	40	8.2
68	gb|AC091501.1|AC091501 Drosophila melanogaster, chromosome 2R, r...	40	8.2
69	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
70	gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033...	40	8.2
71	gb|AC157018.6| Mus musculus 10 BAC RP24-414A19 (Roswell Park Can...	40	8.2
72	gb|AC138336.3| Homo sapiens chromosome 17, clone CTC-386K3, comp...	40	8.2
73	gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome	40	8.2
74	dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, compl...	40	8.2
75	emb|AL391262.3|CNS06C86 Human chromosome 14 DNA sequence BAC R-8...	40	8.2
76	emb|BX323007.11| Zebrafish DNA sequence from clone CH211-262K23 ...	40	8.2
77	gb|AE003806.3| Drosophila melanogaster chromosome 2R, section 44...	40	8.2
78	gb|AF004355.1|AF004355 Trichomonas vaginalis surface immunogen P...	40	8.2
79	gb|AC004289.1|AC004289 Drosophila melanogaster DNA sequence (P1 ...	40	8.2
80	emb|AL357615.7|HS373D10 Homo sapiens chromosome 9 BAC RP11-373D1...	40	8.2
81	dbj|AP001166.4| Homo sapiens genomic DNA, chromosome 18 clone:RP...	40	8.2
82	dbj|AP006639.1| Lotus japonicus genomic DNA, chromosome 3, clone...	40	8.2
83	emb|AL391667.19| Human DNA sequence from clone RP11-214L15 on ch...	40	8.2

---

>dbj|AK104932.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-B10, full
            insert sequence
          Length = 1616

 Score =  341 bits (172), Expect = 2e-90
 Identities = 313/360 (86%)
 Strand = Plus / Minus

                                                                        
Query: 226  ttcattccttgaaatcgtccttgtcatctgctggaaggcctctgtttctccagaaaactg 285
            ||||||||||||||||||| ||||||| ||||||||| |||||||| ||||| |||||||
Sbjct: 1315 ttcattccttgaaatcgtctttgtcatttgctggaagccctctgttcctccaaaaaactg 1256

                                                                        
Query: 286  cgagagcactgcctccgagcgccatgcacacaacactgacagcagaaggaacagcaacaa 345
            | |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| || |
Sbjct: 1255 caagagcactccctccaagcgccatgcatacaacactgacagcagatggaacagctacga 1196

                                                                        
Query: 346  gagggtttgtgaagtgcttttgggcaagtaaaaatccaagtgcagaactctgcattccac 405
            | || || ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 1195 gtggattcgtgaagtgcttttgggcaagtaaaaatccaagtgcagaactctgcatcccgc 1136

                                                                        
Query: 406  actcaattgagatggttctagaagttgattccccaaaagaagaccatttcgacatccaat 465
            | ||||| ||||| || ||||||||||||||||||||||| ||   ||| || | |||||
Sbjct: 1135 attcaatagagatagtcctagaagttgattccccaaaagaggaaacttttgataaccaat 1076

                                                                        
Query: 466  agccaagagtgaatgcaacagcatgcagcagagcaacagggagaataagttgagcacctt 525
            | ||||| |  || ||| || |||||||||||||||| || |  ||||||||| ||||||
Sbjct: 1075 acccaagtgcaaaggcagcaacatgcagcagagcaacgggaattataagttgaccacctt 1016

                                                                        
Query: 526  gagttttcaacacttctgcgacttgcccaatagggctagcacaaagcaaggtggtgagga 585
            ||| ||||||||| |||| |||||| || ||||| |||||||||||||| ||||||||||
Sbjct: 1015 gagctttcaacacctctgagacttgtccgataggactagcacaaagcaaagtggtgagga 956

---

>ref|NM_192312.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1227

 Score =  339 bits (171), Expect = 6e-90
 Identities = 312/359 (86%)
 Strand = Plus / Minus

                                                                        
Query: 227  tcattccttgaaatcgtccttgtcatctgctggaaggcctctgtttctccagaaaactgc 286
            |||||||||||||||||| ||||||| ||||||||| |||||||| ||||| ||||||||
Sbjct: 1227 tcattccttgaaatcgtctttgtcatttgctggaagccctctgttcctccaaaaaactgc 1168

                                                                        
Query: 287  gagagcactgcctccgagcgccatgcacacaacactgacagcagaaggaacagcaacaag 346
             |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 1167 aagagcactccctccaagcgccatgcatacaacactgacagcagatggaacagctacgag 1108

                                                                        
Query: 347  agggtttgtgaagtgcttttgggcaagtaaaaatccaagtgcagaactctgcattccaca 406
             || || ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1107 tggattcgtgaagtgcttttgggcaagtaaaaatccaagtgcagaactctgcatcccgca 1048

                                                                        
Query: 407  ctcaattgagatggttctagaagttgattccccaaaagaagaccatttcgacatccaata 466
             ||||| ||||| || ||||||||||||||||||||||| ||   ||| || | ||||||
Sbjct: 1047 ttcaatagagatagtcctagaagttgattccccaaaagaggaaacttttgataaccaata 988

                                                                        
Query: 467  gccaagagtgaatgcaacagcatgcagcagagcaacagggagaataagttgagcaccttg 526
             ||||| |  || ||| || |||||||||||||||| || |  ||||||||| |||||||
Sbjct: 987  cccaagtgcaaaggcagcaacatgcagcagagcaacgggaattataagttgaccaccttg 928

                                                                       
Query: 527  agttttcaacacttctgcgacttgcccaatagggctagcacaaagcaaggtggtgagga 585
            || ||||||||| |||| |||||| || ||||| |||||||||||||| ||||||||||
Sbjct: 927  agctttcaacacctctgagacttgtccgataggactagcacaaagcaaagtggtgagga 869

---

>dbj|AK069337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014F07, full
            insert sequence
          Length = 1887

 Score =  333 bits (168), Expect = 4e-88
 Identities = 312/360 (86%)
 Strand = Plus / Minus

                                                                        
Query: 226  ttcattccttgaaatcgtccttgtcatctgctggaaggcctctgtttctccagaaaactg 285
            ||||||||||||||||||| ||||||| ||||||||| |||||||| ||||| |||||||
Sbjct: 1559 ttcattccttgaaatcgtctttgtcatttgctggaagccctctgttcctccaaaaaactg 1500

                                                                        
Query: 286  cgagagcactgcctccgagcgccatgcacacaacactgacagcagaaggaacagcaacaa 345
            | |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| || |
Sbjct: 1499 caagagcactccctccaagcgccatgcatacaacactgacagcagatggaacagctacga 1440

                                                                        
Query: 346  gagggtttgtgaagtgcttttgggcaagtaaaaatccaagtgcagaactctgcattccac 405
            | || || ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 1439 gtggattcgtgaagtgcttttgggcaagtaaaaatccaagtgcagaactctgcatcccgc 1380

                                                                        
Query: 406  actcaattgagatggttctagaagttgattccccaaaagaagaccatttcgacatccaat 465
            | ||||| ||||| || ||||||||||||||||||||||| ||   ||| || | |||||
Sbjct: 1379 attcaatagagatagtcctagaagttgattccccaaaagaggaaacttttgataaccaat 1320

                                                                        
Query: 466  agccaagagtgaatgcaacagcatgcagcagagcaacagggagaataagttgagcacctt 525
            | ||||| |  || ||| || |||||||||||||||| || |  ||||||||| ||||||
Sbjct: 1319 acccaagtgcaaaggcagcaacatgcagcagagcaacgggaattataagttgaccacctt 1260

                                                                        
Query: 526  gagttttcaacacttctgcgacttgcccaatagggctagcacaaagcaaggtggtgagga 585
            ||| |||||| || |||| |||||| || ||||| |||||||||||||| ||||||||||
Sbjct: 1259 gagctttcaatacctctgagacttgtccgataggactagcacaaagcaaagtggtgagga 1200

---

>gb|AY568720.1| Lycopersicon esculentum putative anion:sodium symporter mRNA,
            complete cds
          Length = 1224

 Score =  149 bits (75), Expect = 1e-32
 Identities = 135/155 (87%)
 Strand = Plus / Minus

                                                                        
Query: 288  agagcactgcctccgagcgccatgcacacaacactgacagcagaaggaacagcaacaaga 347
            |||||||| || || || |||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 1163 agagcacttccaccaagtgccatgcagacaacactaacagcagaaggtacagcaacaaga 1104

                                                                        
Query: 348  gggtttgtgaagtgcttttgggcaagtaaaaatccaagtgcagaactctgcattccacac 407
            ||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||| 
Sbjct: 1103 gggtttgtgaaatgcttttgtgcaagtagaaatccgagtgccgaactctgcattccacat 1044

                                               
Query: 408  tcaattgagatggttctagaagttgattccccaaa 442
            || || || || ||||| || |||||||| |||||
Sbjct: 1043 tctatcgaaatagttctggatgttgattcaccaaa 1009



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 525 tgagttttcaacacttctgcgacttgcccaatagggctagcacaaag 571
           |||||||||| ||| ||||||||||| ||||| || |||||||||||
Sbjct: 929 tgagttttcagcacatctgcgacttgaccaatcggactagcacaaag 883

---

>ref|NM_179758.2| Arabidopsis thaliana bile acid:sodium symporter/ transporter
            AT2G26900 mRNA, complete cds
          Length = 1504

 Score =  137 bits (69), Expect = 5e-29
 Identities = 221/271 (81%), Gaps = 3/271 (1%)
 Strand = Plus / Minus

                                                                        
Query: 303  agcgccatgcacacaacactgacagcagaaggaacagcaacaagagggtttgtgaagtgc 362
            |||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 1228 agcgccatacagacaacactgactgcagaaggaacagcaactagagggtttgtgaaatgc 1169

                                                                        
Query: 363  ttttgggcaagtaaaaatccaagtgcagaactctgcattccacactcaattgagatggtt 422
            ||||| ||||| || || || || || ||||| ||||||||||| || || || ||||| 
Sbjct: 1168 ttttgtgcaagcaagaacccgagcgctgaactttgcattccacattctatagaaatggta 1109

                                                                        
Query: 423  ctagaagttgattccccaaaagaagaccatttcgacatccaatagccaagagtgaatgca 482
            |  ||||| || || || |||||| ||   || || ||||||||||||| ||  || || 
Sbjct: 1108 cgcgaagtggactcgccgaaagaaaac---tttgaaatccaatagccaatagcaaaggct 1052

                                                                        
Query: 483  acagcatgcagcagagcaacagggagaataagttgagcaccttgagttttcaacacttct 542
             ||||||| || || || || ||||| ||||||||||| ||||| |||||||| || |||
Sbjct: 1051 gcagcatgaaggagtgccaccgggagtataagttgagctccttgggttttcaaaacatct 992

                                           
Query: 543  gcgacttgcccaatagggctagcacaaagca 573
            || ||||| ||||||||||| ||||| ||||
Sbjct: 991  gcaacttgtccaatagggctggcacagagca 961

---

>gb|AF498303.1| Arabidopsis thaliana putative sodium-dependent bile acid symporter
            (Sbf1) mRNA, complete cds
          Length = 1340

 Score =  137 bits (69), Expect = 5e-29
 Identities = 221/271 (81%), Gaps = 3/271 (1%)
 Strand = Plus / Minus

                                                                        
Query: 303  agcgccatgcacacaacactgacagcagaaggaacagcaacaagagggtttgtgaagtgc 362
            |||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 1229 agcgccatacagacaacactgactgcagaaggaacagcaactagagggtttgtgaaatgc 1170

                                                                        
Query: 363  ttttgggcaagtaaaaatccaagtgcagaactctgcattccacactcaattgagatggtt 422
            ||||| ||||| || || || || || ||||| ||||||||||| || || || ||||| 
Sbjct: 1169 ttttgtgcaagcaagaacccgagcgctgaactttgcattccacattctatagaaatggta 1110

                                                                        
Query: 423  ctagaagttgattccccaaaagaagaccatttcgacatccaatagccaagagtgaatgca 482
            |  ||||| || || || |||||| ||   || || ||||||||||||| ||  || || 
Sbjct: 1109 cgcgaagtggactcgccgaaagaaaac---tttgaaatccaatagccaatagcaaaggct 1053

                                                                        
Query: 483  acagcatgcagcagagcaacagggagaataagttgagcaccttgagttttcaacacttct 542
             ||||||| || || || || ||||| ||||||||||| ||||| |||||||| || |||
Sbjct: 1052 gcagcatgaaggagtgccaccgggagtataagttgagctccttgggttttcaaaacatct 993

                                           
Query: 543  gcgacttgcccaatagggctagcacaaagca 573
            || ||||| ||||||||||| ||||| ||||
Sbjct: 992  gcaacttgtccaatagggctggcacagagca 962

---

>emb|BX821670.1|CNS0A947 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL63ZE07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 601

 Score =  137 bits (69), Expect = 5e-29
 Identities = 221/271 (81%), Gaps = 3/271 (1%)
 Strand = Plus / Minus

                                                                       
Query: 303 agcgccatgcacacaacactgacagcagaaggaacagcaacaagagggtttgtgaagtgc 362
           |||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 325 agcgccatacagacaacactgactgcagaaggaacagcaactagagggtttgtgaaatgc 266

                                                                       
Query: 363 ttttgggcaagtaaaaatccaagtgcagaactctgcattccacactcaattgagatggtt 422
           ||||| ||||| || || || || || ||||| ||||||||||| || || || ||||| 
Sbjct: 265 ttttgtgcaagcaagaacccgagcgctgaactttgcattccacattctatagaaatggta 206

                                                                       
Query: 423 ctagaagttgattccccaaaagaagaccatttcgacatccaatagccaagagtgaatgca 482
           |  ||||| || || || |||||| ||   || || ||||||||||||| ||  || || 
Sbjct: 205 cgcgaagtggactcgccgaaagaaaac---tttgaaatccaatagccaatagcaaaggct 149

                                                                       
Query: 483 acagcatgcagcagagcaacagggagaataagttgagcaccttgagttttcaacacttct 542
            ||||||| || || || || ||||| ||||||||||| ||||| |||||||| || |||
Sbjct: 148 gcagcatgaaggagtgccaccgggagtataagttgagctccttgggttttcaaaacatct 89

                                          
Query: 543 gcgacttgcccaatagggctagcacaaagca 573
           || ||||| ||||||||||| ||||| ||||
Sbjct: 88  gcaacttgtccaatagggctggcacagagca 58

---

>gb|BT003925.1| Arabidopsis thaliana clone RAFL15-23-I10 (R20694) putative Na+
            dependent ileal bile acid transporter (At2g26900) mRNA,
            complete cds
          Length = 1409

 Score =  137 bits (69), Expect = 5e-29
 Identities = 221/271 (81%), Gaps = 3/271 (1%)
 Strand = Plus / Minus

                                                                        
Query: 303  agcgccatgcacacaacactgacagcagaaggaacagcaacaagagggtttgtgaagtgc 362
            |||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 1118 agcgccatacagacaacactgactgcagaaggaacagcaactagagggtttgtgaaatgc 1059

                                                                        
Query: 363  ttttgggcaagtaaaaatccaagtgcagaactctgcattccacactcaattgagatggtt 422
            ||||| ||||| || || || || || ||||| ||||||||||| || || || ||||| 
Sbjct: 1058 ttttgtgcaagcaagaacccgagcgctgaactttgcattccacattctatagaaatggta 999

                                                                        
Query: 423  ctagaagttgattccccaaaagaagaccatttcgacatccaatagccaagagtgaatgca 482
            |  ||||| || || || |||||| ||   || || ||||||||||||| ||  || || 
Sbjct: 998  cgcgaagtggactcgccgaaagaaaac---tttgaaatccaatagccaatagcaaaggct 942

                                                                        
Query: 483  acagcatgcagcagagcaacagggagaataagttgagcaccttgagttttcaacacttct 542
             ||||||| || || || || ||||| ||||||||||| ||||| |||||||| || |||
Sbjct: 941  gcagcatgaaggagtgccaccgggagtataagttgagctccttgggttttcaaaacatct 882

                                           
Query: 543  gcgacttgcccaatagggctagcacaaagca 573
            || ||||| ||||||||||| ||||| ||||
Sbjct: 881  gcaacttgtccaatagggctggcacagagca 851

---

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  129 bits (65), Expect = 1e-26
 Identities = 86/93 (92%)
 Strand = Plus / Minus

                                                                            
Query: 305      cgccatgcacacaacactgacagcagaaggaacagcaacaagagggtttgtgaagtgctt 364
                ||||||||| ||||||||||||||||| |||||||| || || || || |||||||||||
Sbjct: 25973573 cgccatgcatacaacactgacagcagatggaacagctacgagtggattcgtgaagtgctt 25973514

                                                 
Query: 365      ttgggcaagtaaaaatccaagtgcagaactctg 397
                |||||||||||||||||||||||||||||||||
Sbjct: 25973513 ttgggcaagtaaaaatccaagtgcagaactctg 25973481



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 69/76 (90%)
 Strand = Plus / Minus

                                                                            
Query: 226      ttcattccttgaaatcgtccttgtcatctgctggaaggcctctgtttctccagaaaactg 285
                ||||||||||||||||||| ||||||| ||||||||| |||||||| ||||| |||||||
Sbjct: 25973778 ttcattccttgaaatcgtctttgtcatttgctggaagccctctgttcctccaaaaaactg 25973719

                                
Query: 286      cgagagcactgcctcc 301
                | |||||||| |||||
Sbjct: 25973718 caagagcactccctcc 25973703



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 128/156 (82%)
 Strand = Plus / Minus

                                                                            
Query: 395      ctgcattccacactcaattgagatggttctagaagttgattccccaaaagaagaccattt 454
                |||||| || || ||||| ||||| || ||||||||||||||||||||||| ||   |||
Sbjct: 25973006 ctgcatcccgcattcaatagagatagtcctagaagttgattccccaaaagaggaaacttt 25972947

                                                                            
Query: 455      cgacatccaatagccaagagtgaatgcaacagcatgcagcagagcaacagggagaataag 514
                 || | |||||| ||||| |  || ||| || |||||||||||||||| || |  |||||
Sbjct: 25972946 tgataaccaatacccaagtgcaaaggcagcaacatgcagcagagcaacgggaattataag 25972887

                                                    
Query: 515      ttgagcaccttgagttttcaacacttctgcgacttg 550
                |||| ||||||||| ||||||||| |||| ||||||
Sbjct: 25972886 ttgaccaccttgagctttcaacacctctgagacttg 25972851



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 561      ctagcacaaagcaaggtggtgagga 585
                |||||||||||||| ||||||||||
Sbjct: 25972608 ctagcacaaagcaaagtggtgagga 25972584

---

>dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0707D10
          Length = 172003

 Score =  129 bits (65), Expect = 1e-26
 Identities = 86/93 (92%)
 Strand = Plus / Minus

                                                                         
Query: 305   cgccatgcacacaacactgacagcagaaggaacagcaacaagagggtttgtgaagtgctt 364
             ||||||||| ||||||||||||||||| |||||||| || || || || |||||||||||
Sbjct: 69640 cgccatgcatacaacactgacagcagatggaacagctacgagtggattcgtgaagtgctt 69581

                                              
Query: 365   ttgggcaagtaaaaatccaagtgcagaactctg 397
             |||||||||||||||||||||||||||||||||
Sbjct: 69580 ttgggcaagtaaaaatccaagtgcagaactctg 69548



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 69/76 (90%)
 Strand = Plus / Minus

                                                                         
Query: 226   ttcattccttgaaatcgtccttgtcatctgctggaaggcctctgtttctccagaaaactg 285
             ||||||||||||||||||| ||||||| ||||||||| |||||||| ||||| |||||||
Sbjct: 69845 ttcattccttgaaatcgtctttgtcatttgctggaagccctctgttcctccaaaaaactg 69786

                             
Query: 286   cgagagcactgcctcc 301
             | |||||||| |||||
Sbjct: 69785 caagagcactccctcc 69770



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 128/156 (82%)
 Strand = Plus / Minus

                                                                         
Query: 395   ctgcattccacactcaattgagatggttctagaagttgattccccaaaagaagaccattt 454
             |||||| || || ||||| ||||| || ||||||||||||||||||||||| ||   |||
Sbjct: 69073 ctgcatcccgcattcaatagagatagtcctagaagttgattccccaaaagaggaaacttt 69014

                                                                         
Query: 455   cgacatccaatagccaagagtgaatgcaacagcatgcagcagagcaacagggagaataag 514
              || | |||||| ||||| |  || ||| || |||||||||||||||| || |  |||||
Sbjct: 69013 tgataaccaatacccaagtgcaaaggcagcaacatgcagcagagcaacgggaattataag 68954

                                                 
Query: 515   ttgagcaccttgagttttcaacacttctgcgacttg 550
             |||| ||||||||| ||||||||| |||| ||||||
Sbjct: 68953 ttgaccaccttgagctttcaacacctctgagacttg 68918



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 561   ctagcacaaagcaaggtggtgagga 585
             |||||||||||||| ||||||||||
Sbjct: 68675 ctagcacaaagcaaagtggtgagga 68651

---

>gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete
             sequence
          Length = 87978

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                         
Query: 305   cgccatgcacacaacactgacagcagaaggaacagcaacaagagggtttgtgaagtgctt 364
             |||||| || ||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 29215 cgccatacagacaacactgactgcagaaggaacagcaactagagggtttgtgaaatgctt 29156

                                               
Query: 365   ttgggcaagtaaaaatccaagtgcagaactctgc 398
             ||| ||||| || || || || || |||||||||
Sbjct: 29155 ttgtgcaagcaagaacccgagcgctgaactctgc 29122



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                         
Query: 459   atccaatagccaagagtgaatgcaacagcatgcagcagagcaacagggagaataagttga 518
             ||||||||||||| ||  || ||  ||||||| || || || || ||||| |||||||||
Sbjct: 28973 atccaatagccaatagcaaaggctgcagcatgaaggagtgccaccgggagtataagttga 28914

                                                   
Query: 519   gcaccttgagttttcaacacttctgcgacttgcccaat 556
             || ||||| |||||||| || ||||| ||||| |||||
Sbjct: 28913 gctccttgggttttcaaaacatctgcaacttgtccaat 28876

---

>emb|BX821429.1|CNS0A9AK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL41ZA08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 540

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 217/275 (78%), Gaps = 7/275 (2%)
 Strand = Plus / Minus

                                                                       
Query: 303 agcgccatgcacacaacactgacagcagaaggaacagcaaca----agagggtttgtgaa 358
           |||||||| || |||||||| || |||||||||||||||||     || | |||||| ||
Sbjct: 299 agcgccatacagacaacactaactgcagaaggaacagcaacttagtagtgtgtttgttaa 240

                                                                       
Query: 359 gtgcttttgggcaagtaaaaatccaagtgcagaactctgcattccacactcaattgagat 418
            |||||||| ||||| || || || || || ||||| ||||||||||| || || || ||
Sbjct: 239 atgcttttgtgcaagcaagaacccgagcgctgaactttgcattccacattctatagaaat 180

                                                                       
Query: 419 ggttctagaagttgattccccaaaagaagaccatttcgacatccaatagccaagagtgaa 478
           ||| |  ||||| || || || |||||| ||   || || ||||||||||||| ||  ||
Sbjct: 179 ggtacgcgaagtggactcgccgaaagaaaac---tttgaaatccaatagccaatagcaaa 123

                                                                       
Query: 479 tgcaacagcatgcagcagagcaacagggagaataagttgagcaccttgagttttcaacac 538
            ||  ||||||| || || || || ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 122 ggctgcagcatgaaggagtgccaccgggagtataagttgagctccttgggttttcaaaac 63

                                              
Query: 539 ttctgcgacttgcccaatagggctagcacaaagca 573
            ||||| ||||| ||||||||||| ||||| ||||
Sbjct: 62  atctgcaacttgtccaatagggctggcacagagca 28

---

>gb|AC140916.17| Medicago truncatula clone mth2-12b2, complete sequence
          Length = 133358

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 210   catcatttttgcttcattcatt 231
             ||||||||||||||||||||||
Sbjct: 59800 catcatttttgcttcattcatt 59821

---

>emb|BX571774.9| Zebrafish DNA sequence from clone DKEY-250A19 in linkage group 9,
             complete sequence
          Length = 140812

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 477   aatgcaacagcatgcagcagag 498
             ||||||||||||||||||||||
Sbjct: 43131 aatgcaacagcatgcagcagag 43152

---

>gb|AC112507.7| Homo sapiens 3 BAC RP11-321C3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 184696

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 313    acacaacactgacagcagaaggaaca 338
              ||||| ||||||||||||||||||||
Sbjct: 161145 acacatcactgacagcagaaggaaca 161170

---

>gb|AC096735.3| Homo sapiens BAC clone RP11-135M12 from 4, complete sequence
          Length = 193510

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 215    tttttgcttcattcattccttg 236
              ||||||||||||||||||||||
Sbjct: 113800 tttttgcttcattcattccttg 113779

---

>gb|AC159424.1| Trypanosoma brucei chromosome 6 clone RPCI93-26F19, complete sequence
          Length = 101897

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   atcatttttgcttcattcatt 231
             |||||||||||||||||||||
Sbjct: 16395 atcatttttgcttcattcatt 16415

---

>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   atcatttttgcttcattcatt 231
             |||||||||||||||||||||
Sbjct: 16395 atcatttttgcttcattcatt 16415

---

>gb|AC079606.6| Trypanosoma brucei chromosome 2 clone RPCI93-3B10, complete sequence
          Length = 160845

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 211    atcatttttgcttcattcatt 231
              |||||||||||||||||||||
Sbjct: 110253 atcatttttgcttcattcatt 110233



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   atcatttttgcttcattcatt 231
             |||||||||||||||||||||
Sbjct: 88465 atcatttttgcttcattcatt 88445



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   atcatttttgcttcattcatt 231
             |||||||||||||||||||||
Sbjct: 78729 atcatttttgcttcattcatt 78709



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   atcatttttgcttcattcatt 231
             |||||||||||||||||||||
Sbjct: 47748 atcatttttgcttcattcatt 47728

---

>gb|AC073246.5| Trypanosoma brucei chromosome 2 clone RPCI93-25N24, complete sequence
          Length = 113329

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   atcatttttgcttcattcatt 231
             |||||||||||||||||||||
Sbjct: 69672 atcatttttgcttcattcatt 69692



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   atcatttttgcttcattcatt 231
             |||||||||||||||||||||
Sbjct: 34036 atcatttttgcttcattcatt 34056

---

>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence
          Length = 1193948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 211    atcatttttgcttcattcatt 231
              |||||||||||||||||||||
Sbjct: 221480 atcatttttgcttcattcatt 221460



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 211    atcatttttgcttcattcatt 231
              |||||||||||||||||||||
Sbjct: 185844 atcatttttgcttcattcatt 185824



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 211    atcatttttgcttcattcatt 231
              |||||||||||||||||||||
Sbjct: 110253 atcatttttgcttcattcatt 110233



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   atcatttttgcttcattcatt 231
             |||||||||||||||||||||
Sbjct: 88465 atcatttttgcttcattcatt 88445



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   atcatttttgcttcattcatt 231
             |||||||||||||||||||||
Sbjct: 78729 atcatttttgcttcattcatt 78709



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   atcatttttgcttcattcatt 231
             |||||||||||||||||||||
Sbjct: 47748 atcatttttgcttcattcatt 47728

---

>gb|AE002135.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 36 of 59 of the
            complete genome
          Length = 13084

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 3    agcttatttagaagatgaaaa 23
            |||||||||||||||||||||
Sbjct: 3606 agcttatttagaagatgaaaa 3626

---

>ref|XM_841290.1| Trypanosoma brucei TREU927 retrotransposon hot spot protein, RHS4l
            (Tb927.1.120) partial mRNA
          Length = 2571

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  atcatttttgcttcattcatt 231
            |||||||||||||||||||||
Sbjct: 996  atcatttttgcttcattcatt 1016

---

>ref|XM_946386.1| Trypanosoma brucei TREU927 retrotransposon hot spot (RHS) protein
            (Tb927.2.340) partial mRNA
          Length = 2577

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  atcatttttgcttcattcatt 231
            |||||||||||||||||||||
Sbjct: 996  atcatttttgcttcattcatt 1016

---

>ref|XM_946390.1| Trypanosoma brucei TREU927 retrotransposon hot spot (RHS) protein
            (Tb927.2.450) partial mRNA
          Length = 2574

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  atcatttttgcttcattcatt 231
            |||||||||||||||||||||
Sbjct: 996  atcatttttgcttcattcatt 1016

---

>ref|XM_946391.1| Trypanosoma brucei TREU927 retrotransposon hot spot (RHS) protein
            (Tb927.2.470) partial mRNA
          Length = 2583

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  atcatttttgcttcattcatt 231
            |||||||||||||||||||||
Sbjct: 999  atcatttttgcttcattcatt 1019

---

>ref|XM_946393.1| Trypanosoma brucei TREU927 retrotransposon hot spot (RHS) protein
            (Tb927.2.560) partial mRNA
          Length = 2538

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  atcatttttgcttcattcatt 231
            |||||||||||||||||||||
Sbjct: 1017 atcatttttgcttcattcatt 1037

---

>ref|XM_946404.1| Trypanosoma brucei TREU927 retrotransposon hot spot (RHS) protein
            (Tb927.2.1210) partial mRNA
          Length = 2526

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  atcatttttgcttcattcatt 231
            |||||||||||||||||||||
Sbjct: 1005 atcatttttgcttcattcatt 1025

---

>emb|BX248585.1| Blochmannia floridanus complete genome; segment 2/3
          Length = 267050

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 88     ataatcaattatctaaagtaa 108
              |||||||||||||||||||||
Sbjct: 124173 ataatcaattatctaaagtaa 124193

---

>emb|AL671259.1|TBH25N7 Trypanosoma brucei 221 VSG expression site BAC
          Length = 123706

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   atcatttttgcttcattcatt 231
             |||||||||||||||||||||
Sbjct: 57058 atcatttttgcttcattcatt 57078

---

>emb|AL671256.1|TBN19B2 Trypanosoma brucei VO2 VSG expression site BAC
          Length = 137759

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   atcatttttgcttcattcatt 231
             |||||||||||||||||||||
Sbjct: 94855 atcatttttgcttcattcatt 94875



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   atcatttttgcttcattcatt 231
             |||||||||||||||||||||
Sbjct: 30295 atcatttttgcttcattcatt 30315

---

>gb|AY046890.1| Trypanosoma brucei RHS4a (RHS4a) gene, complete cds
          Length = 9694

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 211  atcatttttgcttcattcatt 231
            |||||||||||||||||||||
Sbjct: 4445 atcatttttgcttcattcatt 4465

---

>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 52      cccgtacctaaatcattaacaaggg 76
               |||||| ||||||||||||||||||
Sbjct: 2368350 cccgtagctaaatcattaacaaggg 2368374

---

>gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-144f20, complete
             sequence
          Length = 132371

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 355   tgaagtgcttttgggcaagtaaaa 378
             ||||||||||||| ||||||||||
Sbjct: 55183 tgaagtgcttttgagcaagtaaaa 55206

---

>gb|AC105966.11| Mus musculus chromosome 3, clone RP23-403H2, complete sequence
          Length = 201376

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    agaagatgaaaaatacatta 31
             ||||||||||||||||||||
Sbjct: 34225 agaagatgaaaaatacatta 34206

---

>gb|AC169819.2| Rhesus Macaque  BAC CH250-132C22 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 176070

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   attccccaaaagaagaccat 452
             ||||||||||||||||||||
Sbjct: 28915 attccccaaaagaagaccat 28896

---

>gb|AC164077.5| Mus musculus chromosome 3, clone RP24-352M15, complete sequence
          Length = 159925

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     tatttagaagatgaaaaata 26
             ||||||||||||||||||||
Sbjct: 97339 tatttagaagatgaaaaata 97320

---

>gb|AC112979.9| Mus musculus chromosome 3, clone RP24-530C22, complete sequence
          Length = 148599

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 313   acacaacactgacagcagaaggaa 336
             |||||||| |||||||||||||||
Sbjct: 86526 acacaacagtgacagcagaaggaa 86549

---

>gb|AC130483.6| Mus musculus chromosome 15, clone RP24-137D10, complete sequence
          Length = 137626

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 471   agagtgaatgcaacagcatg 490
             ||||||||||||||||||||
Sbjct: 69064 agagtgaatgcaacagcatg 69083

---

>gb|AE017263.1| Mesoplasma florum L1 complete genome
          Length = 793224

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 3     agcttatttagaagatgaaaaatacatt 30
             |||||||||| || ||||||||||||||
Sbjct: 46754 agcttatttaaaatatgaaaaatacatt 46781

---

>gb|AC165233.6| Mus musculus chromosome 8, clone RP23-307O2, complete sequence
          Length = 158925

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      ttatttagaagatgaaaaat 25
              ||||||||||||||||||||
Sbjct: 106044 ttatttagaagatgaaaaat 106025

---

>gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, complete sequence
          Length = 196843

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      tatttagaagatgaaaaata 26
              ||||||||||||||||||||
Sbjct: 160043 tatttagaagatgaaaaata 160062

---

>gb|AC161183.10| Mus musculus chromosome 3, clone RP23-172P6, complete sequence
          Length = 222012

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    agaagatgaaaaatacatta 31
             ||||||||||||||||||||
Sbjct: 60176 agaagatgaaaaatacatta 60195

---

>gb|AC101984.13| Mus musculus chromosome 10, clone RP24-352K10, complete sequence
          Length = 167874

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    catttttgcttcattcattc 232
              ||||||||||||||||||||
Sbjct: 138273 catttttgcttcattcattc 138254

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 56       tacctaaatcattaacaagg 75
                ||||||||||||||||||||
Sbjct: 28529720 tacctaaatcattaacaagg 28529701

---

>ref|XM_382306.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02130.1)
            partial mRNA
          Length = 6780

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 515  ttgagcaccttgagttttca 534
            ||||||||||||||||||||
Sbjct: 1856 ttgagcaccttgagttttca 1875

---

>gb|AC122933.4| Mus musculus BAC clone RP23-18P3 from 14, complete sequence
          Length = 224941

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     tagaagatgaaaaatacatt 30
              ||||||||||||||||||||
Sbjct: 123996 tagaagatgaaaaatacatt 124015

---

>emb|AL031663.2|HS461P17 Human DNA sequence from clone RP3-461P17 on chromosome 20q12-13.2
             Contains two novel genes, the WFDC2 gene for WAP
             four-disulfide core domain 2, the RPL5P2 gene for
             ribosomal protein L5 pseudogene 2, a COX6C (Cytochrome C
             Oxidase subunit VIC) pseudogene, a pseudogene similar to
             part of heat shock 60kDa protein 1 (chaperonin) (HSPD1),
             the SPINT3 gene for Kunitz type serine protease inhibitor
             3 (HKIB9), the SPINLW1 gene for serine protease
             inhibitor-like with Kunitz and WAP domains 1 (eppin), the
             WFDC6 gene for WAP four-disulfide core domain 6, the 3'
             end for WFDC8 gene for WAP four-disulfide core domain 8
             and a CpG island, complete sequence
          Length = 127027

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 205   catagcatcatttttgcttcattc 228
             ||||||||||||||||||| ||||
Sbjct: 95660 catagcatcatttttgctttattc 95683

---

>emb|AL590965.17| Human DNA sequence from clone RP11-185B12 on chromosome 1, complete
             sequence
          Length = 71382

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   ggcctctgtttctccagaaa 281
             ||||||||||||||||||||
Sbjct: 42060 ggcctctgtttctccagaaa 42079

---

>emb|AL391868.16| Human DNA sequence from clone RP11-422N19 on chromosome 9 Contains the
             3' end of one variant of the PCSK5 gene for proprotein
             convertase subtilisin/kexin type 5, a novel gene
             (FLJ11149), a laminin receptor 1 (ribosomal protein SA,
             67kDa) (LAMR1) pseudogene and a CpG island, complete
             sequence
          Length = 102137

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     tatttagaagatgaaaaata 26
             ||||||||||||||||||||
Sbjct: 97445 tatttagaagatgaaaaata 97464

---

>emb|AL356095.11| Human DNA sequence from clone RP11-369J21 on chromosome 10 Contains a
              pseudogene similar to part of homeobox proteins, three
              nuclear DNA binding protein (C1D) pseudogenes, three novel
              genes, a ribosomal protein L22 (RPL22) pseudogene, the 3'
              end of the ANXA11 gene for annexin A11 and two CpG islands,
              complete sequence
          Length = 172079

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 394    tctgcattccacactcaatt 413
              ||||||||||||||||||||
Sbjct: 114281 tctgcattccacactcaatt 114262

---

>gb|AE017160.1| Chlamydophila pneumoniae TW-183, section 4 of 4 of the complete genome
          Length = 324746

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   cttttgggcaagtaaaaatc 381
             ||||||||||||||||||||
Sbjct: 78926 cttttgggcaagtaaaaatc 78945

---

>emb|AL050320.19|HSJ1077I2 Human DNA sequence from clone RP5-1077I2 on chromosome 20 Contains the
             3' end of the SPTLC2L gene for serine palmitoyltransferase
             long chain base subunit 2-like (aminotransferase 2), the
             5' end of C20orf82 gene for a novel protein similar to
             Xenopus Isthmin protein, two novel genes and a putative
             CpG island, complete sequence
          Length = 107057

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     tatttagaagatgaaaaata 26
             ||||||||||||||||||||
Sbjct: 34618 tatttagaagatgaaaaata 34599

---

>gb|AC159975.4| Mus musculus chromosome 3, clone RP24-204F16, complete sequence
          Length = 181930

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 313    acacaacactgacagcagaaggaa 336
              |||||||| |||||||||||||||
Sbjct: 126555 acacaacagtgacagcagaaggaa 126578

---

>emb|AL021452.20|HS285F3 Human DNA sequence from clone CTA-285F3 on chromosome 22q12.1-12.3
            Contains a GSS, complete sequence
          Length = 8278

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 322  tgacagcagaaggaacagca 341
            ||||||||||||||||||||
Sbjct: 3150 tgacagcagaaggaacagca 3131

---

>ref|XM_961740.1| PREDICTED: Tribolium castaneum similar to CG12559-PB.3 (LOC655225),
            mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 323  gacagcagaaggaacagcaacaag 346
            |||||||| |||||||||||||||
Sbjct: 1079 gacagcagcaggaacagcaacaag 1102

---

>gb|AC111062.13| Mus musculus chromosome 3, clone RP24-100J21, complete sequence
          Length = 214132

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      tatttagaagatgaaaaata 26
              ||||||||||||||||||||
Sbjct: 179750 tatttagaagatgaaaaata 179769

---

>emb|AL096856.1|ATT24C20 Arabidopsis thaliana DNA chromosome 3, BAC clone T24C20
          Length = 103889

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   tcatttttgcttcattcatt 231
             ||||||||||||||||||||
Sbjct: 29935 tcatttttgcttcattcatt 29916

---

>gb|AC026130.15| Homo sapiens chromosome 17, clone RP11-801J18, complete sequence
          Length = 182909

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   cacacaacactgacagcaga 331
             ||||||||||||||||||||
Sbjct: 12939 cacacaacactgacagcaga 12958

---

>gb|AC025518.8| Homo sapiens chromosome 17, clone RP11-713H12, complete sequence
          Length = 176355

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   cacacaacactgacagcaga 331
             ||||||||||||||||||||
Sbjct: 76703 cacacaacactgacagcaga 76722

---

>gb|AC145335.15| Pan troglodytes clone rp43-26k12, complete sequence
          Length = 208895

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   tgacagcagaaggaacagca 341
             ||||||||||||||||||||
Sbjct: 23398 tgacagcagaaggaacagca 23417

---

>emb|BX537314.17| Zebrafish DNA sequence from clone CH211-120E1 in linkage group 19,
             complete sequence
          Length = 168538

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   tcatttttgcttcattcatt 231
             ||||||||||||||||||||
Sbjct: 42061 tcatttttgcttcattcatt 42080

---

>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome
          Length = 1229853

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 362     cttttgggcaagtaaaaatc 381
               ||||||||||||||||||||
Sbjct: 1088650 cttttgggcaagtaaaaatc 1088631

---

>gb|AC159214.2| Pan troglodytes BAC clone CH251-522M3 from chromosome unknown, complete
             sequence
          Length = 190101

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   tgacagcagaaggaacagca 341
             ||||||||||||||||||||
Sbjct: 58711 tgacagcagaaggaacagca 58730

---

>dbj|AK034519.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched
            library, clone:9330210C06 product:unclassifiable, full
            insert sequence
          Length = 4185

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 7    tatttagaagatgaaaaata 26
            ||||||||||||||||||||
Sbjct: 3769 tatttagaagatgaaaaata 3750

---

>gb|AF116276.1|AF116276 Trichomonas vaginalis surface immunogen P270 (p270) gene, complete
            cds
          Length = 2053

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ttccttgaaatcgtccttgt 249
            ||||||||||||||||||||
Sbjct: 1645 ttccttgaaatcgtccttgt 1626

---

>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 109  acaaacgcccttatcctgttttcc 132
            |||||||||||| |||||||||||
Sbjct: 2971 acaaacgcccttctcctgttttcc 2948

---

>gb|AC091501.1|AC091501 Drosophila melanogaster, chromosome 2R, region 53D-53E, BAC clone
              BACR36P23, complete sequence
          Length = 198390

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 324    acagcagaaggaacagcaacaaga 347
              |||||||||||| |||||||||||
Sbjct: 132325 acagcagaaggagcagcaacaaga 132302

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 56       tacctaaatcattaacaagg 75
                ||||||||||||||||||||
Sbjct: 28621044 tacctaaatcattaacaagg 28621025

---

>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete
              sequence
          Length = 143681

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     tacctaaatcattaacaagg 75
              ||||||||||||||||||||
Sbjct: 123850 tacctaaatcattaacaagg 123831

---

>gb|AC157018.6| Mus musculus 10 BAC RP24-414A19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 146007

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    catttttgcttcattcattc 232
              ||||||||||||||||||||
Sbjct: 144779 catttttgcttcattcattc 144798

---

>gb|AC138336.3| Homo sapiens chromosome 17, clone CTC-386K3, complete sequence
          Length = 94400

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   tggggacatgaaaaatgctc 164
             ||||||||||||||||||||
Sbjct: 33997 tggggacatgaaaaatgctc 33978

---

>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome
          Length = 1230230

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    cttttgggcaagtaaaaatc 381
              ||||||||||||||||||||
Sbjct: 982792 cttttgggcaagtaaaaatc 982811

---

>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence
          Length = 1226565

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    cttttgggcaagtaaaaatc 381
              ||||||||||||||||||||
Sbjct: 982113 cttttgggcaagtaaaaatc 982132

---

>emb|AL391262.3|CNS06C86 Human chromosome 14 DNA sequence BAC R-817G13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171296

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   aacagcaacaagagggtttg 354
             ||||||||||||||||||||
Sbjct: 38786 aacagcaacaagagggtttg 38767

---

>emb|BX323007.11| Zebrafish DNA sequence from clone CH211-262K23 in linkage group 19,
             complete sequence
          Length = 130807

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   tcatttttgcttcattcatt 231
             ||||||||||||||||||||
Sbjct: 36442 tcatttttgcttcattcatt 36461

---

>gb|AE003806.3| Drosophila melanogaster chromosome 2R, section 44 of 73 of the complete
              sequence
          Length = 271179

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 324    acagcagaaggaacagcaacaaga 347
              |||||||||||| |||||||||||
Sbjct: 227869 acagcagaaggagcagcaacaaga 227846

---

>gb|AF004355.1|AF004355 Trichomonas vaginalis surface immunogen P270 (p270) mRNA, partial
           cds, 3' non-repetitive region
          Length = 1267

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 230 ttccttgaaatcgtccttgt 249
           ||||||||||||||||||||
Sbjct: 793 ttccttgaaatcgtccttgt 774

---

>gb|AC004289.1|AC004289 Drosophila melanogaster DNA sequence (P1 DS03646 (D170)), complete
             sequence
          Length = 81625

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 324   acagcagaaggaacagcaacaaga 347
             |||||||||||| |||||||||||
Sbjct: 26810 acagcagaaggagcagcaacaaga 26787

---

>emb|AL357615.7|HS373D10 Homo sapiens chromosome 9 BAC RP11-373D10, complete sequence
          Length = 171446

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   atcatttttgcttcattcat 230
             ||||||||||||||||||||
Sbjct: 54119 atcatttttgcttcattcat 54138

---

>dbj|AP001166.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-865B13, complete
             sequence
          Length = 104600

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   tgcttcattcattccttgaa 238
             ||||||||||||||||||||
Sbjct: 88922 tgcttcattcattccttgaa 88903

---

>dbj|AP006639.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT25N16, TM0216,
             complete sequence
          Length = 95667

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    ccaataatcaattatctaaa 104
             ||||||||||||||||||||
Sbjct: 91685 ccaataatcaattatctaaa 91666

---

>emb|AL391667.19| Human DNA sequence from clone RP11-214L15 on chromosome 9, complete
             sequence
          Length = 110444

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   atcatttttgcttcattcat 230
             ||||||||||||||||||||
Sbjct: 21436 atcatttttgcttcattcat 21455


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,467,758
Number of Sequences: 3902068
Number of extensions: 6467758
Number of successful extensions: 131367
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130925
Number of HSP's gapped (non-prelim): 437
length of query: 601
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 578
effective length of database: 17,143,297,704
effective search space: 9908826072912
effective search space used: 9908826072912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---