ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22h15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PGK2_METJA (Q58877) 2-phosphoglycerate kinase (EC 2.7.2.-) (2PGK) 29 3.2
2YG2M_YEAST (P53255) Hypothetical 58.2 kDa protein in DBF2-VAS1 i... 28 4.2
3DLT_DROME (Q8T626) Protein disks lost (Protein vanaso) (Codanin ... 28 4.2
4PANC_ENTFA (Q833S6) Pantoate--beta-alanine ligase (EC 6.3.2.1) (... 28 5.5
5COLX_ARATH (Q9C9F4) Putative zinc finger protein At1g68190 28 7.2
6GIDA_VIBCH (Q9KNG4) tRNA uridine 5-carboxymethylaminomethyl modi... 28 7.2
7RSC2_YEAST (Q06488) Chromatin structure remodeling complex prote... 27 9.3

>PGK2_METJA (Q58877) 2-phosphoglycerate kinase (EC 2.7.2.-) (2PGK)|
          Length = 309

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 150 LEGHCILIQTAHIIPRLXKQMNYLSSFXAYLRWTYLPHEMHLPEF 284
           +EG  ++I+  H++P L K     +S   ++  T    E+H   F
Sbjct: 186 VEGQSVIIEGTHLVPTLLKDKYLENSHVVFIMLTIYNEELHKMRF 230



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>YG2M_YEAST (P53255) Hypothetical 58.2 kDa protein in DBF2-VAS1 intergenic|
           region
          Length = 507

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = +3

Query: 141 DVKLEGHCILIQTAHIIPRL--XKQMNYLSSFXAY----LRWTYLPHEMHLPEFGPCFQK 302
           D+ + GHC++I   H IP+L   K      S  AY    ++  Y+  +M    F    ++
Sbjct: 305 DMDISGHCLIIPIEH-IPKLDPSKNAELTQSILAYEASLVKMNYIKFDMCTIVFEIQSER 363

Query: 303 QIHHSRLWVPL 335
            IH  +  +P+
Sbjct: 364 SIHFHKQVIPV 374



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>DLT_DROME (Q8T626) Protein disks lost (Protein vanaso) (Codanin 1 homolog)|
          Length = 1240

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +2

Query: 179  STYYSALVKADELFELFXGISSMDLFASRDASPRVWXLFSETNSPFSTLG 328
            S   S  ++AD L ELF     M LFA  + SP+VW + SE     S  G
Sbjct: 1161 SMLQSGAIRADHLNELF-----MPLFAE-NWSPKVWCMLSELLQQLSLSG 1204



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>PANC_ENTFA (Q833S6) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate|
           synthetase) (Pantoate-activating enzyme)
          Length = 282

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 71  PSVMQLYF*NAKPAIRVLPXXKSRCKTGRPLHFDSNSTYYSAL 199
           P V ++Y  NA   + +    +  C   RP+HF    T  S L
Sbjct: 93  PEVEEMYCDNASTFVNITGLTEGLCGASRPIHFRGVCTVVSKL 135



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>COLX_ARATH (Q9C9F4) Putative zinc finger protein At1g68190|
          Length = 356

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +2

Query: 170 DSNSTYY-SALVKADELFELFXGISSMDLFASRDASPRVWXLFSETNSPFS 319
           DSN+ ++ S+L K+ E+ + F    +  +FA + AS  +    SET++P+S
Sbjct: 270 DSNNVFFVSSLDKSHEM-KTFSSSFNNPIFAPKPASSTISFSSSETDNPYS 319



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>GIDA_VIBCH (Q9KNG4) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 631

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 113 IRVLPXXKSRCKTGRPLHFDSNSTYYSAL 199
           +R LP    R KTG P   D+NS  +S L
Sbjct: 187 LRELPFRVDRLKTGTPPRIDANSVDFSVL 215



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>RSC2_YEAST (Q06488) Chromatin structure remodeling complex protein RSC2|
           (Remodel the structure of chromatin complex subunit 2)
          Length = 889

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 72  HLLCNYISKMRSQLFEFYQXANQDVKLEG 158
           HL+ N + K     F  YQ  N D+KLEG
Sbjct: 478 HLVSNLVGKCYVIHFTRYQRGNPDMKLEG 506


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,737,226
Number of Sequences: 219361
Number of extensions: 882756
Number of successful extensions: 2105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2105
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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