ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22h15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.020
2dbj|AK103543.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.020
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.020
4emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769... 48 0.020
5emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa... 48 0.020
6dbj|AB036988.1| Oryza sativa (japonica cultivar-group) mRNA for ... 48 0.020
7gb|AC115357.5| Mus musculus BAC clone RP23-81J4 from chromosome ... 42 1.2
8emb|AL662962.3|OSJN00165 Oryza sativa genomic DNA, chromosome 4,... 42 1.2
9gb|AC093656.4| Homo sapiens BAC clone RP11-440N4 from 4, complet... 42 1.2
10gb|AC097519.2| Homo sapiens BAC clone RP11-549K7 from 4, complet... 42 1.2
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
12gb|AC022968.9| Homo sapiens chromosome 18, clone RP11-421N8, com... 42 1.2
13gb|AC123609.11| Mus musculus chromosome 3, clone RP23-281B17, co... 40 4.9
14gb|AC092224.2| Drosophila melanogaster clone BACR17M04, complete... 40 4.9
15gb|AC092245.2| Drosophila melanogaster clone BACR32C03, complete... 40 4.9
16gb|AC125057.5| Mus musculus BAC clone RP23-399K1 from chromosome... 40 4.9
17gb|AC123869.4| Mus musculus BAC clone RP23-245M16 from 12, compl... 40 4.9
18gb|DQ058593.1| Oryza brachyantha clone CentO-F_76 centromeric re... 40 4.9
19emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chr... 40 4.9
20emb|AL596130.13| Mouse DNA sequence from clone RP23-209O5 on chr... 40 4.9
21gb|AC105269.2| Homo sapiens chromosome 1 clone RP4-788P17, compl... 40 4.9
22dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
23gb|AE003644.4| Drosophila melanogaster chromosome 2L, section 53... 40 4.9
24gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
25emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb... 40 4.9

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 149    actggaaggccattgcattttgattcaa 176
              |||||||||| |||||||||||||||||
Sbjct: 535176 actggaaggctattgcattttgattcaa 535203



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     tctgttatgcaattatattt 93
              ||||||||||||||||||||
Sbjct: 562968 tctgttatgcaattatattt 562987



to top

>dbj|AK103543.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132D17, full
            insert sequence
          Length = 1752

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 149  actggaaggccattgcattttgattcaa 176
            |||||||||| |||||||||||||||||
Sbjct: 1520 actggaaggctattgcattttgattcaa 1493



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 149    actggaaggccattgcattttgattcaa 176
              |||||||||| |||||||||||||||||
Sbjct: 535176 actggaaggctattgcattttgattcaa 535203



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     tctgttatgcaattatattt 93
              ||||||||||||||||||||
Sbjct: 562968 tctgttatgcaattatattt 562987



to top

>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 115859

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 149    actggaaggccattgcattttgattcaa 176
              |||||||||| |||||||||||||||||
Sbjct: 113667 actggaaggctattgcattttgattcaa 113640



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    tctgttatgcaattatattt 93
             ||||||||||||||||||||
Sbjct: 85875 tctgttatgcaattatattt 85856



to top

>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 141089

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 149   actggaaggccattgcattttgattcaa 176
             |||||||||| |||||||||||||||||
Sbjct: 11596 actggaaggctattgcattttgattcaa 11569



to top

>dbj|AB036988.1| Oryza sativa (japonica cultivar-group) mRNA for dsRNA-binding protein
            ODB1, complete cds
          Length = 1772

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 149  actggaaggccattgcattttgattcaa 176
            |||||||||| |||||||||||||||||
Sbjct: 1522 actggaaggctattgcattttgattcaa 1495



to top

>gb|AC115357.5| Mus musculus BAC clone RP23-81J4 from chromosome 14, complete sequence
          Length = 233685

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 284    tggnccttgttttcagaaacaaat 307
              ||| ||||||||||||||||||||
Sbjct: 131204 tggcccttgttttcagaaacaaat 131181



to top

>emb|AL662962.3|OSJN00165 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029L02,
             complete sequence
          Length = 165786

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 245   atggacctatttgcctcacga 265
             |||||||||||||||||||||
Sbjct: 38911 atggacctatttgcctcacga 38891



to top

>gb|AC093656.4| Homo sapiens BAC clone RP11-440N4 from 4, complete sequence
          Length = 152326

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 210  atgaattatttgagctctttt 230
            |||||||||||||||||||||
Sbjct: 9801 atgaattatttgagctctttt 9781



to top

>gb|AC097519.2| Homo sapiens BAC clone RP11-549K7 from 4, complete sequence
          Length = 185556

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 210   atgaattatttgagctctttt 230
             |||||||||||||||||||||
Sbjct: 76161 atgaattatttgagctctttt 76141



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 245      atggacctatttgcctcacga 265
                |||||||||||||||||||||
Sbjct: 12744692 atggacctatttgcctcacga 12744672



to top

>gb|AC022968.9| Homo sapiens chromosome 18, clone RP11-421N8, complete sequence
          Length = 187277

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 294   tttcagaaacaaattcaccat 314
             |||||||||||||||||||||
Sbjct: 44010 tttcagaaacaaattcaccat 44030



to top

>gb|AC123609.11| Mus musculus chromosome 3, clone RP23-281B17, complete sequence
          Length = 223516

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 168    ttgattcaaacagcacatattatt 191
              ||||||||||||||||| ||||||
Sbjct: 127279 ttgattcaaacagcacaaattatt 127256



to top

>gb|AC092224.2| Drosophila melanogaster clone BACR17M04, complete sequence
          Length = 145213

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     ctaataactaatggccaaga 42
              ||||||||||||||||||||
Sbjct: 128388 ctaataactaatggccaaga 128407



to top

>gb|AC092245.2| Drosophila melanogaster clone BACR32C03, complete sequence
          Length = 128623

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    ctaataactaatggccaaga 42
             ||||||||||||||||||||
Sbjct: 18819 ctaataactaatggccaaga 18838



to top

>gb|AC125057.5| Mus musculus BAC clone RP23-399K1 from chromosome 12, complete
            sequence
          Length = 182276

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 75   ctgttatgcaattatatttc 94
            ||||||||||||||||||||
Sbjct: 1949 ctgttatgcaattatatttc 1930



to top

>gb|AC123869.4| Mus musculus BAC clone RP23-245M16 from 12, complete sequence
          Length = 167795

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    ctgttatgcaattatatttc 94
             ||||||||||||||||||||
Sbjct: 37731 ctgttatgcaattatatttc 37750



to top

>gb|DQ058593.1| Oryza brachyantha clone CentO-F_76 centromeric repeat sequence
          Length = 316

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 301 aacaaattcaccattctcga 320
           ||||||||||||||||||||
Sbjct: 78  aacaaattcaccattctcga 97



to top

>emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chromosome 9 Contains an
              alpha type 7 proteasome subunit (PSMA7) pseudogene, the 3'
              end of a novel gene, a novel gene and a CpG island,
              complete sequence
          Length = 182653

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 134    aaatcaagatgtaaaactggaagg 157
              |||||| |||||||||||||||||
Sbjct: 158145 aaatcaggatgtaaaactggaagg 158168



to top

>emb|AL596130.13| Mouse DNA sequence from clone RP23-209O5 on chromosome 11, complete
             sequence
          Length = 203000

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   gatgcatctcccagagtttg 285
             ||||||||||||||||||||
Sbjct: 28790 gatgcatctcccagagtttg 28809



to top

>gb|AC105269.2| Homo sapiens chromosome 1 clone RP4-788P17, complete sequence
          Length = 120910

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    tgcaattatatttctaaaat 100
             ||||||||||||||||||||
Sbjct: 50012 tgcaattatatttctaaaat 49993



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     tctgttatgcaattatattt 93
              ||||||||||||||||||||
Sbjct: 484850 tctgttatgcaattatattt 484869



to top

>gb|AE003644.4| Drosophila melanogaster chromosome 2L, section 53 of 83 of the complete
              sequence
          Length = 263306

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     ctaataactaatggccaaga 42
              ||||||||||||||||||||
Sbjct: 154256 ctaataactaatggccaaga 154237



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     tctgttatgcaattatattt 93
              ||||||||||||||||||||
Sbjct: 484850 tctgttatgcaattatattt 484869



to top

>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 130544

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    tctgttatgcaattatattt 93
             ||||||||||||||||||||
Sbjct: 85462 tctgttatgcaattatattt 85443


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,071,545
Number of Sequences: 3902068
Number of extensions: 3071545
Number of successful extensions: 60593
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60447
Number of HSP's gapped (non-prelim): 146
length of query: 365
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 343
effective length of database: 17,147,199,772
effective search space: 5881489521796
effective search space used: 5881489521796
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top