| Clone Name | rbags22h15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Plus Query: 149 actggaaggccattgcattttgattcaa 176 |||||||||| ||||||||||||||||| Sbjct: 535176 actggaaggctattgcattttgattcaa 535203 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tctgttatgcaattatattt 93 |||||||||||||||||||| Sbjct: 562968 tctgttatgcaattatattt 562987
>dbj|AK103543.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132D17, full insert sequence Length = 1752 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 149 actggaaggccattgcattttgattcaa 176 |||||||||| ||||||||||||||||| Sbjct: 1520 actggaaggctattgcattttgattcaa 1493
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Plus Query: 149 actggaaggccattgcattttgattcaa 176 |||||||||| ||||||||||||||||| Sbjct: 535176 actggaaggctattgcattttgattcaa 535203 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tctgttatgcaattatattt 93 |||||||||||||||||||| Sbjct: 562968 tctgttatgcaattatattt 562987
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 149 actggaaggccattgcattttgattcaa 176 |||||||||| ||||||||||||||||| Sbjct: 113667 actggaaggctattgcattttgattcaa 113640 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tctgttatgcaattatattt 93 |||||||||||||||||||| Sbjct: 85875 tctgttatgcaattatattt 85856
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 149 actggaaggccattgcattttgattcaa 176 |||||||||| ||||||||||||||||| Sbjct: 11596 actggaaggctattgcattttgattcaa 11569
>dbj|AB036988.1| Oryza sativa (japonica cultivar-group) mRNA for dsRNA-binding protein ODB1, complete cds Length = 1772 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 149 actggaaggccattgcattttgattcaa 176 |||||||||| ||||||||||||||||| Sbjct: 1522 actggaaggctattgcattttgattcaa 1495
>gb|AC115357.5| Mus musculus BAC clone RP23-81J4 from chromosome 14, complete sequence Length = 233685 Score = 42.1 bits (21), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 tggnccttgttttcagaaacaaat 307 ||| |||||||||||||||||||| Sbjct: 131204 tggcccttgttttcagaaacaaat 131181
>emb|AL662962.3|OSJN00165 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029L02, complete sequence Length = 165786 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 atggacctatttgcctcacga 265 ||||||||||||||||||||| Sbjct: 38911 atggacctatttgcctcacga 38891
>gb|AC093656.4| Homo sapiens BAC clone RP11-440N4 from 4, complete sequence Length = 152326 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 atgaattatttgagctctttt 230 ||||||||||||||||||||| Sbjct: 9801 atgaattatttgagctctttt 9781
>gb|AC097519.2| Homo sapiens BAC clone RP11-549K7 from 4, complete sequence Length = 185556 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 atgaattatttgagctctttt 230 ||||||||||||||||||||| Sbjct: 76161 atgaattatttgagctctttt 76141
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 atggacctatttgcctcacga 265 ||||||||||||||||||||| Sbjct: 12744692 atggacctatttgcctcacga 12744672
>gb|AC022968.9| Homo sapiens chromosome 18, clone RP11-421N8, complete sequence Length = 187277 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 294 tttcagaaacaaattcaccat 314 ||||||||||||||||||||| Sbjct: 44010 tttcagaaacaaattcaccat 44030
>gb|AC123609.11| Mus musculus chromosome 3, clone RP23-281B17, complete sequence Length = 223516 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 ttgattcaaacagcacatattatt 191 ||||||||||||||||| |||||| Sbjct: 127279 ttgattcaaacagcacaaattatt 127256
>gb|AC092224.2| Drosophila melanogaster clone BACR17M04, complete sequence Length = 145213 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ctaataactaatggccaaga 42 |||||||||||||||||||| Sbjct: 128388 ctaataactaatggccaaga 128407
>gb|AC092245.2| Drosophila melanogaster clone BACR32C03, complete sequence Length = 128623 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ctaataactaatggccaaga 42 |||||||||||||||||||| Sbjct: 18819 ctaataactaatggccaaga 18838
>gb|AC125057.5| Mus musculus BAC clone RP23-399K1 from chromosome 12, complete sequence Length = 182276 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ctgttatgcaattatatttc 94 |||||||||||||||||||| Sbjct: 1949 ctgttatgcaattatatttc 1930
>gb|AC123869.4| Mus musculus BAC clone RP23-245M16 from 12, complete sequence Length = 167795 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 ctgttatgcaattatatttc 94 |||||||||||||||||||| Sbjct: 37731 ctgttatgcaattatatttc 37750
>gb|DQ058593.1| Oryza brachyantha clone CentO-F_76 centromeric repeat sequence Length = 316 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 aacaaattcaccattctcga 320 |||||||||||||||||||| Sbjct: 78 aacaaattcaccattctcga 97
>emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chromosome 9 Contains an alpha type 7 proteasome subunit (PSMA7) pseudogene, the 3' end of a novel gene, a novel gene and a CpG island, complete sequence Length = 182653 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 aaatcaagatgtaaaactggaagg 157 |||||| ||||||||||||||||| Sbjct: 158145 aaatcaggatgtaaaactggaagg 158168
>emb|AL596130.13| Mouse DNA sequence from clone RP23-209O5 on chromosome 11, complete sequence Length = 203000 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gatgcatctcccagagtttg 285 |||||||||||||||||||| Sbjct: 28790 gatgcatctcccagagtttg 28809
>gb|AC105269.2| Homo sapiens chromosome 1 clone RP4-788P17, complete sequence Length = 120910 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tgcaattatatttctaaaat 100 |||||||||||||||||||| Sbjct: 50012 tgcaattatatttctaaaat 49993
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tctgttatgcaattatattt 93 |||||||||||||||||||| Sbjct: 484850 tctgttatgcaattatattt 484869
>gb|AE003644.4| Drosophila melanogaster chromosome 2L, section 53 of 83 of the complete sequence Length = 263306 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ctaataactaatggccaaga 42 |||||||||||||||||||| Sbjct: 154256 ctaataactaatggccaaga 154237
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tctgttatgcaattatattt 93 |||||||||||||||||||| Sbjct: 484850 tctgttatgcaattatattt 484869
>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 130544 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tctgttatgcaattatattt 93 |||||||||||||||||||| Sbjct: 85462 tctgttatgcaattatattt 85443 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,071,545 Number of Sequences: 3902068 Number of extensions: 3071545 Number of successful extensions: 60593 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60447 Number of HSP's gapped (non-prelim): 146 length of query: 365 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 343 effective length of database: 17,147,199,772 effective search space: 5881489521796 effective search space used: 5881489521796 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)