>OTU6B_XENLA (Q6GM06) OTU domain-containing protein 6B|
          Length = 294

 Score = 36.6 bits (83), Expect(2) = 1e-04
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
 Frame = -1

Query: 503 FIKRRTETEWFIEGNFDTYVSQIRKPHVWGGEPELLMASHVLQMPITVYMRXXXXXXXXX 324
           F+   +  + + +  F  Y + I     WGG+ EL   SH+L+ PI V            
Sbjct: 200 FLTNSSTGDMYTQEEFQKYCTDIVNTPAWGGQLELRALSHILKTPIEVIQ------AESL 253

Query: 323 XXEYGQEYGKEDPIRVLY----HGCG-HYEAL 243
               G+EY  + PI ++Y    +G G HY ++
Sbjct: 254 PIVIGEEYSNK-PITLVYMRHAYGLGEHYNSV 284



 Score = 28.5 bits (62), Expect(2) = 1e-04
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 657 QKYSVTGIPGDGRCLFRSVAHGECIRSGKPIPNENLQRKLAD 532
           ++  +  IP DG C++R++ H +    G  +   NL+ + AD
Sbjct: 148 RELQIRQIPSDGHCMYRAIEH-QLNEQGNSLTVANLRSQTAD 188

>YHB3_YEAST (P38747) Hypothetical 36.1 kDa protein in YLF2-PRPS4 intergenic|
           region
          Length = 307

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
 Frame = -1

Query: 509 DEFIKRRTETEWFIEGNFDTYVSQIRKPHVWGGEPELLMASHVLQMPITVYMRXXXXXXX 330
           D+FI    + E     + D Y  ++     WGGE E+L  SHV   PI++ M        
Sbjct: 218 DDFIPYLFDEETMKMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILMSGRPIQVY 277

Query: 329 XXXXEYGQEYGKEDPIRVLYHGCG-----HYEALH 240
                   E GK   ++++Y+        HY +LH
Sbjct: 278 -------NECGKNPELKLVYYKHSYALGEHYNSLH 305

>OTU6B_CHICK (Q5ZIP6) OTU domain-containing protein 6B|
          Length = 302

 Score = 36.6 bits (83), Expect(2) = 0.007
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
 Frame = -1

Query: 503 FIKRRTETEWFIEGNFDTYVSQIRKPHVWGGEPELLMASHVLQMPITVYMRXXXXXXXXX 324
           F+      + + +  F+ Y   I     WGG+ EL   SH+LQ PI V            
Sbjct: 206 FLTNPNTGDMYSKEEFEKYCDDIANTAAWGGQLELRALSHILQTPIEVVQ------MDSP 259

Query: 323 XXEYGQEYGKEDPIRVLY----HGCG-HYEALHI 237
               G+EY  + PI ++Y    +G G HY ++ +
Sbjct: 260 SIIVGEEYSGK-PIILVYMRHAYGLGEHYNSVKL 292



 Score = 22.3 bits (46), Expect(2) = 0.007
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 636 IPGDGRCLFRSV 601
           IP DG C++R++
Sbjct: 161 IPSDGHCMYRAI 172

>OTU6B_XENTR (Q5M8L0) OTU domain-containing protein 6B|
          Length = 294

 Score = 30.0 bits (66), Expect(2) = 0.013
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
 Frame = -1

Query: 503 FIKRRTETEWFIEGNFDTYVSQIRKPHVWGGEPELLMASHVLQMPITVYMRXXXXXXXXX 324
           F+   +  + + +  F  Y + I     WGG+ EL   SH+L+  I V            
Sbjct: 200 FLTNSSTGDMYTQEEFLKYCTDIVNTPAWGGQLELRALSHILKTAIEVIQ------AESS 253

Query: 323 XXEYGQEYGKEDPIRVLY----HGCG-HYEALHI 237
               G+EY  +  I ++Y    +G G HY ++ +
Sbjct: 254 PIVIGEEYSSK-AITLVYMRHAYGLGEHYNSVEL 286



 Score = 28.1 bits (61), Expect(2) = 0.013
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 657 QKYSVTGIPGDGRCLFRSVAHGECIRSGKPIPNENLQRKLAD 532
           ++  +  IP DG C++R++ H +    G  +   NL+ + AD
Sbjct: 148 RELQIRQIPSDGHCMYRAIEH-QLRERGNDLTVANLRSQTAD 188

>OTU6A_MOUSE (Q6IE21) OTU domain-containing protein 6A (Hin-6 protease)|
          Length = 290

 Score = 35.4 bits (80), Expect(2) = 0.016
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = -1

Query: 509 DEFIKRRTETE---WFIEGNFDTYVSQIRKPHVWGGEPELLMASHVLQMPITVYMRXXXX 339
           D+F+   TE E   ++   +F  Y   I     WGG+ EL   SHVLQ PI V       
Sbjct: 184 DDFLPFFTEPEAGNFYTREDFLRYCDDIVHNASWGGQLELRALSHVLQTPIEVVQ----- 238

Query: 338 XXXXXXXEYGQEYGKEDPIRVLY 270
                    G+EY ++ P+ ++Y
Sbjct: 239 -ANSPTIVIGEEYTRK-PVTLVY 259



 Score = 22.3 bits (46), Expect(2) = 0.016
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 636 IPGDGRCLFRSV 601
           IP DG C++R++
Sbjct: 147 IPADGHCMYRAI 158

>OTU6B_BRARE (Q7ZV00) OTU domain-containing protein 6B|
          Length = 293

 Score = 35.0 bits (79), Expect(2) = 0.021
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
 Frame = -1

Query: 512 ADEFIKRRTET---EWFIEGNFDTYVSQIRKPHVWGGEPELLMASHVLQMPITVYMRXXX 342
           AD+F+   T     + +    F+ Y S +     WGG+ EL   S VLQ+PI V      
Sbjct: 191 ADDFMPFLTNPNTGDMYTAEEFEKYCSDVADTAAWGGQLELKALSQVLQLPIEVIQ---- 246

Query: 341 XXXXXXXXEYGQEYGKEDPIRVLY----HGCG-HYEAL 243
                     G+EY K   I ++Y    +G G HY ++
Sbjct: 247 --ADSPCITIGEEYDK-PKITLIYMRHAYGLGEHYNSV 281



 Score = 22.3 bits (46), Expect(2) = 0.021
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 636 IPGDGRCLFRSVAH 595
           I  DG C++R+V H
Sbjct: 152 ISSDGHCMYRAVEH 165

>OTU6B_HUMAN (Q8N6M0) OTU domain-containing protein 6B|
          Length = 293

 Score = 35.4 bits (80), Expect(2) = 0.027
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
 Frame = -1

Query: 503 FIKRRTETEWFIEGNFDTYVSQIRKPHVWGGEPELLMASHVLQMPITVYMRXXXXXXXXX 324
           F+      + +    F  Y   I     WGG+ EL   SH+LQ PI +            
Sbjct: 197 FLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQ------ADSP 250

Query: 323 XXEYGQEYGKEDPIRVLY----HGCG-HYEAL 243
               G+EY K+ P+ ++Y    +G G HY ++
Sbjct: 251 PIIVGEEYSKK-PLILVYMRHAYGLGEHYNSV 281



 Score = 21.6 bits (44), Expect(2) = 0.027
 Identities = 5/19 (26%), Positives = 13/19 (68%)
 Frame = -3

Query: 657 QKYSVTGIPGDGRCLFRSV 601
           ++  +  IP DG C+++++
Sbjct: 145 RQLEIKQIPSDGHCMYKAI 163

>OTU6A_HUMAN (Q7L8S5) OTU domain-containing protein 6A|
          Length = 288

 Score = 33.5 bits (75), Expect(2) = 0.058
 Identities = 24/78 (30%), Positives = 34/78 (43%)
 Frame = -1

Query: 503 FIKRRTETEWFIEGNFDTYVSQIRKPHVWGGEPELLMASHVLQMPITVYMRXXXXXXXXX 324
           F      ++ F   +F  Y   I +   WGG+ EL   SHVL+ PI V            
Sbjct: 188 FFSNPETSDSFGYDDFMIYCDNIVRTTAWGGQLELRALSHVLKTPIEVIQ------ADSP 241

Query: 323 XXEYGQEYGKEDPIRVLY 270
               G+EY K+ PI ++Y
Sbjct: 242 TLIIGEEYVKK-PIILVY 258



 Score = 22.3 bits (46), Expect(2) = 0.058
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 636 IPGDGRCLFRSV 601
           IP DG C++R++
Sbjct: 146 IPADGHCMYRAI 157

>OTUD4_HUMAN (Q01804) OTU domain-containing protein 4 (HIV-1-induced protein|
           HIN-1)
          Length = 145

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -1

Query: 497 KRRTETEWFIEGNFDTYVSQIRKPHVWGGEPELLMASHVLQMPITVY 357
           + R + E FIEG+F+ Y+ ++  P  W G+ E+   S + +    +Y
Sbjct: 9   ENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIY 55

>OTU6B_MOUSE (Q8K2H2) OTU domain-containing protein 6B|
          Length = 294

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
 Frame = -1

Query: 503 FIKRRTETEWFIEGNFDTYVSQIRKPHVWGGEPELLMASHVLQMPITVYMRXXXXXXXXX 324
           F+   +  + +    F  Y   I     WGG+ EL   SH+LQ PI +            
Sbjct: 198 FLTNPSTGDMYTPEEFGKYCDDIVNTAAWGGQLELRALSHILQTPIEILQ------ADAP 251

Query: 323 XXEYGQEYGKEDPIRVLY----HGCG-HYEAL 243
               G+EY + +P+ ++Y    +G G HY ++
Sbjct: 252 PIIVGEEYPR-NPLVLVYMRHAYGLGEHYNSV 282

>OTU_DROME (P10383) Protein ovarian tumor locus|
          Length = 853

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 20/87 (22%), Positives = 39/87 (44%)
 Frame = -1

Query: 500 IKRRTETEWFIEGNFDTYVSQIRKPHVWGGEPELLMASHVLQMPITVYMRXXXXXXXXXX 321
           +KRR   E  I G+FD+Y+  + KP  +G   EL   S + +  + +Y            
Sbjct: 69  LKRRI-FEKEIPGDFDSYMQDMSKPKTYGTMTELRAMSCLYRRNVILYEPYNMGTSVVFN 127

Query: 320 XEYGQEYGKEDPIRVLYHGCGHYEALH 240
             Y + +      RV ++   H+++++
Sbjct: 128 RRYAENF------RVFFNNENHFDSVY 148

>RAG1_XENLA (Q91829) V(D)J recombination-activating protein 1 (RAG-1)|
          Length = 1045

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +3

Query: 306 LAILCD--RYQTARCFFAHINSDRHLKNMRSHEQFWLSSPHMWLPN-LRDICIEIALNKP 476
           +  LCD  R + A+    H  +  H +N++ +E  W S+PH   P+ LRD    ++    
Sbjct: 732 ICTLCDATRLEAAQNLVNHSITRSHCENLQRYE-MWRSNPHHESPDELRDRVKGVSAKPF 790

Query: 477 FSLCPSLDKL 506
               PS+D L
Sbjct: 791 IETLPSIDAL 800


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,092,941
Number of Sequences: 219361
Number of extensions: 1830138
Number of successful extensions: 4183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4182
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)