Clone Information

BLAST Search Result

Clone Name	rbags22h13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK070222.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	254	3e-64
2	ref\|XM_483243.1\| Oryza sativa (japonica cultivar-group), mRNA	135	2e-28
3	dbj\|AK073328.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	135	2e-28
4	gb\|AC108758.2\| Oryza sativa (japonica cultivar-group) chromosome...	101	3e-18
5	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	101	3e-18
6	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	84	7e-13
7	dbj\|AP005245.3\| Oryza sativa (japonica cultivar-group) genomic D...	84	7e-13
8	dbj\|AP003883.3\| Oryza sativa (japonica cultivar-group) genomic D...	84	7e-13
9	dbj\|AB252068.1\| Oryza sativa (indica cultivar-group) DNA, SCAR m...	60	1e-05
10	dbj\|AK120577.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	6e-04
11	ref\|NM_180385.1\| Arabidopsis thaliana cysteine-type peptidase AT...	46	0.15
12	ref\|NM_115643.2\| Arabidopsis thaliana cysteine-type peptidase AT...	46	0.15
13	emb\|BX824976.1\|CNS0A5MJ Arabidopsis thaliana Full-length cDNA Co...	46	0.15
14	gb\|AY086909.1\| Arabidopsis thaliana clone 29384 mRNA, complete s...	46	0.15
15	dbj\|AK175291.1\| Arabidopsis thaliana mRNA, complete cds, clone: ...	46	0.15
16	gb\|AC111143.10\| Mus musculus chromosome 3, clone RP23-372C7, com...	42	2.3
17	gb\|AC132621.5\| Mus musculus BAC clone RP23-102G6 from chromosome...	42	2.3
18	emb\|AL132977.1\|ATT10K17 Arabidopsis thaliana DNA chromosome 3, B...	42	2.3
19	gb\|AC090744.5\| Homo sapiens chromosome 11, clone RP11-660K15, co...	42	2.3
20	gb\|AC154105.2\| Mus musculus BAC clone RP24-457N12 from chromosom...	42	2.3
21	gb\|AC068329.8\| Homo sapiens chromosome 11, clone RP11-82N10, com...	42	2.3
22	dbj\|AK176705.1\| Arabidopsis thaliana mRNA, complete cds, clone: ...	42	2.3
23	dbj\|AK175225.1\| Arabidopsis thaliana mRNA, complete cds, clone: ...	42	2.3
24	emb\|AL805906.7\| Mouse DNA sequence from clone RP23-113J20 on chr...	42	2.3
25	gb\|BC004658.1\| Mus musculus chloride intracellular channel 1, mR...	40	9.2
26	gb\|AC144933.4\| Mus musculus BAC clone RP24-531B24 from chromosom...	40	9.2
27	ref\|NM_033444.1\| Mus musculus chloride intracellular channel 1 (...	40	9.2
28	gb\|AC146548.11\| Medicago truncatula clone mth2-2p3, complete seq...	40	9.2
29	emb\|AL355353.23\| Human DNA sequence from clone RP11-385F7 on chr...	40	9.2
30	emb\|AL356113.8\| Human DNA sequence from clone RP11-429A24 on chr...	40	9.2
31	gb\|AY224262.1\| Macaca radiata 3033 12S ribosomal RNA gene, parti...	40	9.2
32	gb\|AY224261.1\| Macaca radiata 3028 12S ribosomal RNA gene, parti...	40	9.2
33	gb\|AC010327.8\| Homo sapiens chromosome 19 clone CTD-2587H24, com...	40	9.2
34	dbj\|AP003791.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
35	gb\|AC105421.2\| Homo sapiens BAC clone RP11-695A18 from 4, comple...	40	9.2
36	dbj\|AK150611.1\| Mus musculus bone marrow macrophage cDNA, RIKEN ...	40	9.2
37	dbj\|AK153509.1\| Mus musculus bone marrow macrophage cDNA, RIKEN ...	40	9.2
38	dbj\|AK150382.1\| Mus musculus bone marrow macrophage cDNA, RIKEN ...	40	9.2
39	dbj\|AK167765.1\| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length...	40	9.2
40	dbj\|AK168262.1\| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-...	40	9.2
41	dbj\|AK088809.1\| Mus musculus 2 days neonate thymus thymic cells ...	40	9.2
42	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
43	gb\|BC034929.1\| Homo sapiens, clone IMAGE:4553293, mRNA	40	9.2
44	dbj\|AP003313.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
45	gb\|AC002559.1\|AC002559 Homo sapiens Chromosome 10 PAC clone pDJ2...	40	9.2
46	gb\|AC117544.8\| Mus musculus chromosome 8, clone RP23-99L5, compl...	40	9.2

>dbj|AK070222.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041O13, full
            insert sequence
          Length = 1377

 Score =  254 bits (128), Expect = 3e-64
 Identities = 383/465 (82%), Gaps = 6/465 (1%)
 Strand = Plus / Minus

                                                                        
Query: 187  tctgagctccaaatgttttacagttttgacctgggttcagcgtttcctggtatatgcagc 246
            |||||||||||||||||  ||||  ||||||| ||  || | ||||||||||| || || 
Sbjct: 1256 tctgagctccaaatgtt--acagccttgaccttggaccaccctttcctggtatctgtaga 1199

                                                                        
Query: 247  gcttcataatggccacagccatgatagaggactcggattgggtcttccttcccgtactcc 306
            || |||||||||||| | |||||| | || ||| | ||||| ||||| ||||||||||||
Sbjct: 1198 gcgtcataatggccaaaaccatgaaaaagaacttgaattggatcttctttcccgtactcc 1139

                                                                        
Query: 307  tggccatactctgcgatcgctatcaaaccgcccgctgcttcttcgcgcatataaacagtg 366
            || ||||| ||||| || ||||| ||||| || ||| | |  ||  |||| || ||||| 
Sbjct: 1138 tgaccatattctgcaattgctattaaaccaccagcttccttatcatgcatgtacacagta 1079

                                                                        
Query: 367  atcggcatctgaagaacatgagaagccatgagcaattctggctctcctccccacacatgt 426
            || |||||| |||||||||| |||||||| | || |||||| || |||||||||||||||
Sbjct: 1078 attggcatccgaagaacatgcgaagccattaacagttctggttcacctccccacacatgt 1019

                                                                        
Query: 427  ggcttcctaatctgagagacatatgtatcgaaattgccctcaataaaccattcagtctct 486
            |||||||||||| |||||||||||| |||||| |  ||||||| ||||||||||||||||
Sbjct: 1018 ggcttcctaatccgagagacatatgcatcgaagtccccctcaacaaaccattcagtctct 959

                                                                        
Query: 487  gtccgtctcttgataaactcatcagcaacccaatgttcttaaatcatcagcgagctttct 546
            | ||||||||||||||| ||||| || | ||| || |||||| |||||||| | ||||||
Sbjct: 958  gcccgtctcttgataaattcatcggcga-ccattgctcttaagtcatcagccatctttct 900

                                                                        
Query: 547  ctgaagattctcattaggtatgggtttccctgacctaatgcactcaccatgagccacaga 606
            ||| ||||  |||| ||||    | || ||||||||||| ||  ||||||||||||||||
Sbjct: 899  ctggagatcatcatcaggt---cgcttacctgacctaatacatgcaccatgagccacaga 843

                                                         
Query: 607  acgaaacaagcatctaccgtccccaggaatgccagtgacagaata 651
             || |||||||| || || || |||||||||||||| ||||||||
Sbjct: 842  tcggaacaagcaccttccatctccaggaatgccagtaacagaata 798

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>ref|XM_483243.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1793

 Score =  135 bits (68), Expect = 2e-28
 Identities = 231/284 (81%), Gaps = 1/284 (0%)
 Strand = Plus / Minus

                                                                        
Query: 353  gcatataaacagtgatcggcatctgaagaacatgagaagccatgagcaattctggctctc 412
            |||| ||||| || || ||||||| ||||||||| ||||||||||  |||||||| || |
Sbjct: 1153 gcatgtaaaccgttattggcatctcaagaacatgtgaagccatgaataattctggttcac 1094

                                                                        
Query: 413  ctccccacacatgtggcttcctaatctgagagacatatgtatcgaaattgccctcaataa 472
            | |||||||||||||| | |||||| || || |||||||| |||||||  ||||||||||
Sbjct: 1093 cgccccacacatgtggatgcctaatatgggacacatatgtgtcgaaatctccctcaataa 1034

                                                                        
Query: 473  accattcagtctctgtccgtctcttgataaactcatcagcaacccaatgttcttaaatca 532
            ||||||| |  |||  ||| ||||| | ||| |||||||||||| | ||  || || || 
Sbjct: 1033 accattccgattcttcccgcctcttaacaaattcatcagcaacc-attgccctcaattcg 975

                                                                        
Query: 533  tcagcgagctttctctgaagattctcattaggtatgggtttccctgacctaatgcactca 592
            ||||| ||||||||||||||||  ||||| ||||||||| | |||| |||||||||  | 
Sbjct: 974  tcagctagctttctctgaagatcttcatttggtatgggtcttcctgccctaatgcatgcc 915

                                                        
Query: 593  ccatgagccacagaacgaaacaagcatctaccgtccccaggaat 636
            ||||||  |||||| || || |||||||| || || ||||||||
Sbjct: 914  ccatgaatcacagagcggaataagcatcttccatctccaggaat 871

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>dbj|AK073328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029N11, full
            insert sequence
          Length = 1795

 Score =  135 bits (68), Expect = 2e-28
 Identities = 231/284 (81%), Gaps = 1/284 (0%)
 Strand = Plus / Minus

                                                                        
Query: 353  gcatataaacagtgatcggcatctgaagaacatgagaagccatgagcaattctggctctc 412
            |||| ||||| || || ||||||| ||||||||| ||||||||||  |||||||| || |
Sbjct: 1154 gcatgtaaaccgttattggcatctcaagaacatgtgaagccatgaataattctggttcac 1095

                                                                        
Query: 413  ctccccacacatgtggcttcctaatctgagagacatatgtatcgaaattgccctcaataa 472
            | |||||||||||||| | |||||| || || |||||||| |||||||  ||||||||||
Sbjct: 1094 cgccccacacatgtggatgcctaatatgggacacatatgtgtcgaaatctccctcaataa 1035

                                                                        
Query: 473  accattcagtctctgtccgtctcttgataaactcatcagcaacccaatgttcttaaatca 532
            ||||||| |  |||  ||| ||||| | ||| |||||||||||| | ||  || || || 
Sbjct: 1034 accattccgattcttcccgcctcttaacaaattcatcagcaacc-attgccctcaattcg 976

                                                                        
Query: 533  tcagcgagctttctctgaagattctcattaggtatgggtttccctgacctaatgcactca 592
            ||||| ||||||||||||||||  ||||| ||||||||| | |||| |||||||||  | 
Sbjct: 975  tcagctagctttctctgaagatcttcatttggtatgggtcttcctgccctaatgcatgcc 916

                                                        
Query: 593  ccatgagccacagaacgaaacaagcatctaccgtccccaggaat 636
            ||||||  |||||| || || |||||||| || || ||||||||
Sbjct: 915  ccatgaatcacagagcggaataagcatcttccatctccaggaat 872

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>gb|AC108758.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0066E19, complete sequence
          Length = 145575

 Score =  101 bits (51), Expect = 3e-18
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                         
Query: 377   gaagaacatgagaagccatgagcaattctggctctcctccccacacatgtggcttcctaa 436
             |||||||||| |||||||| | || |||||| || |||||||||||||||||||||||||
Sbjct: 36835 gaagaacatgcgaagccattaacagttctggttcacctccccacacatgtggcttcctaa 36776

                                                    
Query: 437   tctgagagacatatgtatcgaaattgccctcaataaacc 475
             || |||||||||||| |||||| |  ||||||| |||||
Sbjct: 36775 tccgagagacatatgcatcgaagtccccctcaacaaacc 36737



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 122/149 (81%), Gaps = 2/149 (1%)
 Strand = Plus / Minus

                                                                         
Query: 187   tctgagctccaaatgttttacagttttgacctgggttcagcgtttcctggtatatgcagc 246
             |||||||||||||||||  ||||  ||||||| ||  || | ||||||||||| || || 
Sbjct: 37467 tctgagctccaaatgtt--acagccttgaccttggaccaccctttcctggtatctgtaga 37410

                                                                         
Query: 247   gcttcataatggccacagccatgatagaggactcggattgggtcttccttcccgtactcc 306
             || |||||||||||| | |||||| | || ||| | ||||| ||||| ||||||||||||
Sbjct: 37409 gcgtcataatggccaaaaccatgaaaaagaacttgaattggatcttctttcccgtactcc 37350

                                          
Query: 307   tggccatactctgcgatcgctatcaaacc 335
             || ||||| ||||| || ||||| |||||
Sbjct: 37349 tgaccatattctgcaattgctattaaacc 37321



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                   
Query: 472   aaccattcagtctctgtccgtctcttgataaactcatc 509
             |||||||||||||||| ||||||||||||||| |||||
Sbjct: 36643 aaccattcagtctctgcccgtctcttgataaattcatc 36606



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                         
Query: 575   cctgacctaatgcactcaccatgagccacagaacgaaacaagcatctaccgtccccagga 634
             ||||||||||| ||  |||||||||||||||| || |||||||| || || || ||||||
Sbjct: 36406 cctgacctaatacatgcaccatgagccacagatcggaacaagcaccttccatctccagga 36347

                  
Query: 635   atgcc 639
             |||||
Sbjct: 36346 atgcc 36342

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  101 bits (51), Expect = 3e-18
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                            
Query: 377      gaagaacatgagaagccatgagcaattctggctctcctccccacacatgtggcttcctaa 436
                |||||||||| |||||||| | || |||||| || |||||||||||||||||||||||||
Sbjct: 18638959 gaagaacatgcgaagccattaacagttctggttcacctccccacacatgtggcttcctaa 18638900

                                                       
Query: 437      tctgagagacatatgtatcgaaattgccctcaataaacc 475
                || |||||||||||| |||||| |  ||||||| |||||
Sbjct: 18638899 tccgagagacatatgcatcgaagtccccctcaacaaacc 18638861



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 122/149 (81%), Gaps = 2/149 (1%)
 Strand = Plus / Minus

                                                                            
Query: 187      tctgagctccaaatgttttacagttttgacctgggttcagcgtttcctggtatatgcagc 246
                |||||||||||||||||  ||||  ||||||| ||  || | ||||||||||| || || 
Sbjct: 18639591 tctgagctccaaatgtt--acagccttgaccttggaccaccctttcctggtatctgtaga 18639534

                                                                            
Query: 247      gcttcataatggccacagccatgatagaggactcggattgggtcttccttcccgtactcc 306
                || |||||||||||| | |||||| | || ||| | ||||| ||||| ||||||||||||
Sbjct: 18639533 gcgtcataatggccaaaaccatgaaaaagaacttgaattggatcttctttcccgtactcc 18639474

                                             
Query: 307      tggccatactctgcgatcgctatcaaacc 335
                || ||||| ||||| || ||||| |||||
Sbjct: 18639473 tgaccatattctgcaattgctattaaacc 18639445



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 472      aaccattcagtctctgtccgtctcttgataaactcatc 509
                |||||||||||||||| ||||||||||||||| |||||
Sbjct: 18638767 aaccattcagtctctgcccgtctcttgataaattcatc 18638730



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                            
Query: 575      cctgacctaatgcactcaccatgagccacagaacgaaacaagcatctaccgtccccagga 634
                ||||||||||| ||  |||||||||||||||| || |||||||| || || || ||||||
Sbjct: 18638530 cctgacctaatacatgcaccatgagccacagatcggaacaagcaccttccatctccagga 18638471

                     
Query: 635      atgcc 639
                |||||
Sbjct: 18638470 atgcc 18638466

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                            
Query: 378      aagaacatgagaagccatgagcaattctggctctcctccccacacatgtggcttcctaat 437
                ||||||||| ||||||||||  |||||||| || || |||||||||||||| | ||||||
Sbjct: 25018000 aagaacatgtgaagccatgaataattctggttcaccgccccacacatgtggatgcctaat 25017941

                                                      
Query: 438      ctgagagacatatgtatcgaaattgccctcaataaacc 475
                 || || |||||||| |||||||  |||||||||||||
Sbjct: 25017940 atgggacacatatgtgtcgaaatctccctcaataaacc 25017903



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                            
Query: 533      tcagcgagctttctctgaagattctcattaggtatgggtttccctgacctaatgcactca 592
                ||||| ||||||||||||||||  ||||| ||||||||| | |||| |||||||||  | 
Sbjct: 25017656 tcagctagctttctctgaagatcttcatttggtatgggtcttcctgccctaatgcatgcc 25017597

                                                            
Query: 593      ccatgagccacagaacgaaacaagcatctaccgtccccaggaat 636
                ||||||  |||||| || || |||||||| || || ||||||||
Sbjct: 25017596 ccatgaatcacagagcggaataagcatcttccatctccaggaat 25017553

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>dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0025J22
          Length = 175355

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                         
Query: 378   aagaacatgagaagccatgagcaattctggctctcctccccacacatgtggcttcctaat 437
             ||||||||| ||||||||||  |||||||| || || |||||||||||||| | ||||||
Sbjct: 74116 aagaacatgtgaagccatgaataattctggttcaccgccccacacatgtggatgcctaat 74057

                                                   
Query: 438   ctgagagacatatgtatcgaaattgccctcaataaacc 475
              || || |||||||| |||||||  |||||||||||||
Sbjct: 74056 atgggacacatatgtgtcgaaatctccctcaataaacc 74019



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                         
Query: 533   tcagcgagctttctctgaagattctcattaggtatgggtttccctgacctaatgcactca 592
             ||||| ||||||||||||||||  ||||| ||||||||| | |||| |||||||||  | 
Sbjct: 73772 tcagctagctttctctgaagatcttcatttggtatgggtcttcctgccctaatgcatgcc 73713

                                                         
Query: 593   ccatgagccacagaacgaaacaagcatctaccgtccccaggaat 636
             ||||||  |||||| || || |||||||| || || ||||||||
Sbjct: 73712 ccatgaatcacagagcggaataagcatcttccatctccaggaat 73669

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>dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1134_H03
          Length = 135914

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                          
Query: 378    aagaacatgagaagccatgagcaattctggctctcctccccacacatgtggcttcctaat 437
              ||||||||| ||||||||||  |||||||| || || |||||||||||||| | ||||||
Sbjct: 119715 aagaacatgtgaagccatgaataattctggttcaccgccccacacatgtggatgcctaat 119656

                                                    
Query: 438    ctgagagacatatgtatcgaaattgccctcaataaacc 475
               || || |||||||| |||||||  |||||||||||||
Sbjct: 119655 atgggacacatatgtgtcgaaatctccctcaataaacc 119618



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                          
Query: 533    tcagcgagctttctctgaagattctcattaggtatgggtttccctgacctaatgcactca 592
              ||||| ||||||||||||||||  ||||| ||||||||| | |||| |||||||||  | 
Sbjct: 119371 tcagctagctttctctgaagatcttcatttggtatgggtcttcctgccctaatgcatgcc 119312

                                                          
Query: 593    ccatgagccacagaacgaaacaagcatctaccgtccccaggaat 636
              ||||||  |||||| || || |||||||| || || ||||||||
Sbjct: 119311 ccatgaatcacagagcggaataagcatcttccatctccaggaat 119268

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>dbj|AB252068.1| Oryza sativa (indica cultivar-group) DNA, SCAR marker SCAR1088 in
           chromosome 9
          Length = 733

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 472 aaccattcagtctctgtccgtctcttgataaactcatc 509
           |||||||||||||||| ||||||||||||||| |||||
Sbjct: 111 aaccattcagtctctgcccgtctcttgataaattcatc 148



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 575 cctgacctaatgcactcaccatgagccacagaacgaaacaagcatctaccgtccccagga 634
           ||||||||||| ||  |||||||||||||||| || |||||||| || || || ||||||
Sbjct: 348 cctgacctaatacatgcaccatgagccacagatcggaacaagcaccttccatctccagga 407

                
Query: 635 atgcc 639
           |||||
Sbjct: 408 atgcc 412

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>dbj|AK120577.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135D06, full
           insert sequence
          Length = 754

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                       
Query: 358 taaacagtgatcggcatctgaagaacatgagaagccatgagcaattctggctctcctccc 417
           ||||||||||| ||||||  ||||||||| ||   |||||||| ||| || |||||||||
Sbjct: 422 taaacagtgataggcatcctaagaacatgggagcacatgagcagttcaggttctcctccc 363

                                  
Query: 418 cacacatgtggcttcctaatctg 440
           || ||||| ||||| || |||||
Sbjct: 362 caaacatgaggctttcttatctg 340

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>ref|NM_180385.1| Arabidopsis thaliana cysteine-type peptidase AT3G57810 transcript
           variant AT3G57810.2 mRNA, complete cds
          Length = 1287

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                       
Query: 354 catataaacagtgatcggcatctgaagaacatgagaagccatgagcaattctggctctcc 413
           |||||| || ||||| |||||||| ||||| || ||||||||||  | ||| || || ||
Sbjct: 992 catatacactgtgattggcatctggagaacgtgtgaagccatgaagagttcaggttcacc 933

                          
Query: 414 tccccacacatgtgg 428
           ||||||||| |||||
Sbjct: 932 tccccacacgtgtgg 918



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 596 tgagccacagaacgaaacaagcatctaccgtccccaggaat 636
           ||||| |||||||||||||| ||||| || ||||| |||||
Sbjct: 751 tgagctacagaacgaaacaaacatctgccatcccccggaat 711



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 265  ccatgatagaggactcggattgggtcttccttcccgtactcctggccatactctgc 320
            ||||| || ||||||||||||||||| || || ||||| || || ||||| |||||
Sbjct: 1081 ccatggtataggactcggattgggtcgtctttaccgtattcttgaccatattctgc 1026



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 498 gataaactcatcagcaaccc 517
           ||||||||||||||||||||
Sbjct: 848 gataaactcatcagcaaccc 829

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>ref|NM_115643.2| Arabidopsis thaliana cysteine-type peptidase AT3G57810 transcript
           variant AT3G57810.1 mRNA, complete cds
          Length = 1187

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                       
Query: 354 catataaacagtgatcggcatctgaagaacatgagaagccatgagcaattctggctctcc 413
           |||||| || ||||| |||||||| ||||| || ||||||||||  | ||| || || ||
Sbjct: 892 catatacactgtgattggcatctggagaacgtgtgaagccatgaagagttcaggttcacc 833

                          
Query: 414 tccccacacatgtgg 428
           ||||||||| |||||
Sbjct: 832 tccccacacgtgtgg 818



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 596 tgagccacagaacgaaacaagcatctaccgtccccaggaat 636
           ||||| |||||||||||||| ||||| || ||||| |||||
Sbjct: 651 tgagctacagaacgaaacaaacatctgccatcccccggaat 611



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 265 ccatgatagaggactcggattgggtcttccttcccgtactcctggccatactctgc 320
           ||||| || ||||||||||||||||| || || ||||| || || ||||| |||||
Sbjct: 981 ccatggtataggactcggattgggtcgtctttaccgtattcttgaccatattctgc 926



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 498 gataaactcatcagcaaccc 517
           ||||||||||||||||||||
Sbjct: 748 gataaactcatcagcaaccc 729

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>emb|BX824976.1|CNS0A5MJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH86ZH09 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1380

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                        
Query: 354  catataaacagtgatcggcatctgaagaacatgagaagccatgagcaattctggctctcc 413
            |||||| || ||||| |||||||| ||||| || ||||||||||  | ||| || || ||
Sbjct: 1128 catatacactgtgattggcatctggagaacgtgtgaagccatgaagagttcaggttcacc 1069

                           
Query: 414  tccccacacatgtgg 428
            ||||||||| |||||
Sbjct: 1068 tccccacacgtgtgg 1054



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 265  ccatgatagaggactcggattgggtcttccttcccgtactcctggccatactctgc 320
            ||||| || ||||||||||||||||| || || ||||| || || ||||| |||||
Sbjct: 1217 ccatggtataggactcggattgggtcgtctttaccgtattcttgaccatattctgc 1162

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>gb|AY086909.1| Arabidopsis thaliana clone 29384 mRNA, complete sequence
          Length = 1282

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                       
Query: 354 catataaacagtgatcggcatctgaagaacatgagaagccatgagcaattctggctctcc 413
           |||||| || ||||| |||||||| ||||| || ||||||||||  | ||| || || ||
Sbjct: 992 catatacactgtgattggcatctggagaacgtgtgaagccatgaagagttcaggttcacc 933

                          
Query: 414 tccccacacatgtgg 428
           ||||||||| |||||
Sbjct: 932 tccccacacgtgtgg 918



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 596 tgagccacagaacgaaacaagcatctaccgtccccaggaat 636
           ||||| |||||||||||||| ||||| || ||||| |||||
Sbjct: 751 tgagctacagaacgaaacaaacatctgccatcccccggaat 711



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 265  ccatgatagaggactcggattgggtcttccttcccgtactcctggccatactctgc 320
            ||||| || ||||||||||||||||| || || ||||| || || ||||| |||||
Sbjct: 1081 ccatggtataggactcggattgggtcgtctttaccgtattcttgaccatattctgc 1026



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 498 gataaactcatcagcaaccc 517
           ||||||||||||||||||||
Sbjct: 848 gataaactcatcagcaaccc 829

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>dbj|AK175291.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-73-A21
          Length = 1193

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                       
Query: 354 catataaacagtgatcggcatctgaagaacatgagaagccatgagcaattctggctctcc 413
           |||||| || ||||| |||||||| ||||| || ||||||||||  | ||| || || ||
Sbjct: 893 catatacactgtgattggcatctggagaacgtgtgaagccatgaagagttcaggttcacc 834

                          
Query: 414 tccccacacatgtgg 428
           ||||||||| |||||
Sbjct: 833 tccccacacgtgtgg 819



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 596 tgagccacagaacgaaacaagcatctaccgtccccaggaat 636
           ||||| |||||||||||||| ||||| || ||||| |||||
Sbjct: 652 tgagctacagaacgaaacaaacatctgccatcccccggaat 612



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 265 ccatgatagaggactcggattgggtcttccttcccgtactcctggccatactctgc 320
           ||||| || ||||||||||||||||| || || ||||| || || ||||| |||||
Sbjct: 982 ccatggtataggactcggattgggtcgtctttaccgtattcttgaccatattctgc 927



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 498 gataaactcatcagcaaccc 517
           ||||||||||||||||||||
Sbjct: 749 gataaactcatcagcaaccc 730

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>gb|AC111143.10| Mus musculus chromosome 3, clone RP23-372C7, complete sequence
          Length = 147125

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 620   ctaccgtccccaggaatgcca 640
             |||||||||||||||||||||
Sbjct: 53824 ctaccgtccccaggaatgcca 53844

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>gb|AC132621.5| Mus musculus BAC clone RP23-102G6 from chromosome 12, complete sequence
          Length = 211730

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 281   ggattgggtcttccttcccgt 301
             |||||||||||||||||||||
Sbjct: 46147 ggattgggtcttccttcccgt 46127

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>emb|AL132977.1|ATT10K17 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17
          Length = 109016

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 596   tgagccacagaacgaaacaagcatctaccgtccccaggaat 636
             ||||| |||||||||||||| ||||| || ||||| |||||
Sbjct: 12051 tgagctacagaacgaaacaaacatctgccatcccccggaat 12011



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 265   ccatgatagaggactcggattgggtcttccttcccgtactcctggccatactctgc 320
             ||||| || ||||||||||||||||| || || ||||| || || ||||| |||||
Sbjct: 12821 ccatggtataggactcggattgggtcgtctttaccgtattcttgaccatattctgc 12766

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>gb|AC090744.5| Homo sapiens chromosome 11, clone RP11-660K15, complete sequence
          Length = 195434

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 370   ggcatctgaagaacatgagaa 390
             |||||||||||||||||||||
Sbjct: 98300 ggcatctgaagaacatgagaa 98320

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>gb|AC154105.2| Mus musculus BAC clone RP24-457N12 from chromosome 12, complete sequence
          Length = 237236

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 281    ggattgggtcttccttcccgt 301
              |||||||||||||||||||||
Sbjct: 128010 ggattgggtcttccttcccgt 128030

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>gb|AC068329.8| Homo sapiens chromosome 11, clone RP11-82N10, complete sequence
          Length = 185347

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 370   ggcatctgaagaacatgagaa 390
             |||||||||||||||||||||
Sbjct: 33963 ggcatctgaagaacatgagaa 33943

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>dbj|AK176705.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-24-L06
          Length = 1327

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 596 tgagccacagaacgaaacaagcatctaccgtccccaggaat 636
           ||||| |||||||||||||| ||||| || ||||| |||||
Sbjct: 781 tgagctacagaacgaaacaaacatctgccatcccccggaat 741



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 265  ccatgatagaggactcggattgggtcttccttcccgtactcctggccatactctgc 320
            ||||| || ||||||||||||||||| || || ||||| || || ||||| |||||
Sbjct: 1110 ccatggtataggactcggattgggtcgtctttaccgtattcttgaccatattctgc 1055



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 498 gataaactcatcagcaaccc 517
           ||||||||||||||||||||
Sbjct: 878 gataaactcatcagcaaccc 859

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>dbj|AK175225.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-65-D23
          Length = 1327

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 596 tgagccacagaacgaaacaagcatctaccgtccccaggaat 636
           ||||| |||||||||||||| ||||| || ||||| |||||
Sbjct: 781 tgagctacagaacgaaacaaacatctgccatcccccggaat 741



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 265  ccatgatagaggactcggattgggtcttccttcccgtactcctggccatactctgc 320
            ||||| || ||||||||||||||||| || || ||||| || || ||||| |||||
Sbjct: 1110 ccatggtataggactcggattgggtcgtctttaccgtattcttgaccatattctgc 1055



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 498 gataaactcatcagcaaccc 517
           ||||||||||||||||||||
Sbjct: 878 gataaactcatcagcaaccc 859

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>emb|AL805906.7| Mouse DNA sequence from clone RP23-113J20 on chromosome 4, complete
              sequence
          Length = 176416

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 595    atgagccacagaacgaaacaa 615
              |||||||||||||||||||||
Sbjct: 163869 atgagccacagaacgaaacaa 163849

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>gb|BC004658.1| Mus musculus chloride intracellular channel 1, mRNA (cDNA clone
           MGC:6371 IMAGE:3498118), complete cds
          Length = 1178

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 cagtctctgtccgtctcttg 498
           ||||||||||||||||||||
Sbjct: 368 cagtctctgtccgtctcttg 349

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>gb|AC144933.4| Mus musculus BAC clone RP24-531B24 from chromosome 8, complete sequence
          Length = 169667

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   atcggcatctgaagaacatg 386
             ||||||||||||||||||||
Sbjct: 60946 atcggcatctgaagaacatg 60965

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>ref|NM_033444.1| Mus musculus chloride intracellular channel 1 (Clic1), mRNA
          Length = 1178

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 cagtctctgtccgtctcttg 498
           ||||||||||||||||||||
Sbjct: 368 cagtctctgtccgtctcttg 349

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>gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete sequence
          Length = 129327

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 526   taaatcatcagcgagctttc 545
             ||||||||||||||||||||
Sbjct: 37341 taaatcatcagcgagctttc 37360

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>emb|AL355353.23| Human DNA sequence from clone RP11-385F7 on chromosome 6 Contains the 5'
              end of the CD2AP gene for CD2-associated protein and three
              CpG islands, complete sequence
          Length = 141605

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    ataatggccacagccatgat 271
              ||||||||||||||||||||
Sbjct: 120063 ataatggccacagccatgat 120082

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>emb|AL356113.8| Human DNA sequence from clone RP11-429A24 on chromosome 10 Contains part
              of a novel gene (DKFZp761L0424) (KIAA1217) and three novel
              genes (FLJ11983 FLJ14139), complete sequence
          Length = 190429

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    atgttttacagttttgacct 218
              ||||||||||||||||||||
Sbjct: 101164 atgttttacagttttgacct 101183

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>gb|AY224262.1| Macaca radiata 3033 12S ribosomal RNA gene, partial sequence;
           tRNA-Val gene, complete sequence; and 16S ribosomal RNA
           gene, partial sequence; mitochondrial genes for
           mitochondrial products
          Length = 1497

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 116 ttctgagacagaaaatgtag 135
           ||||||||||||||||||||
Sbjct: 297 ttctgagacagaaaatgtag 278

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>gb|AY224261.1| Macaca radiata 3028 12S ribosomal RNA gene, partial sequence;
           tRNA-Val gene, complete sequence; and 16S ribosomal RNA
           gene, partial sequence; mitochondrial genes for
           mitochondrial products
          Length = 1497

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 116 ttctgagacagaaaatgtag 135
           ||||||||||||||||||||
Sbjct: 297 ttctgagacagaaaatgtag 278

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>gb|AC010327.8| Homo sapiens chromosome 19 clone CTD-2587H24, complete sequence
          Length = 146664

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    atagcgagtacattttctct 47
             ||||||||||||||||||||
Sbjct: 85479 atagcgagtacattttctct 85498

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>dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1065G12
          Length = 165006

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 393   catgagcaattctggctctcctccccacacatgtggcttcctaatctg 440
             |||||||| ||| || ||||||||||| ||||| ||||| || |||||
Sbjct: 12230 catgagcagttcaggttctcctccccaaacatgaggctttcttatctg 12277

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>gb|AC105421.2| Homo sapiens BAC clone RP11-695A18 from 4, complete sequence
          Length = 162793

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   tccaaatgttttacagtttt 213
             ||||||||||||||||||||
Sbjct: 58645 tccaaatgttttacagtttt 58626

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>dbj|AK150611.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830012L18 product:chloride
           intracellular channel 1, full insert sequence
          Length = 1149

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 cagtctctgtccgtctcttg 498
           ||||||||||||||||||||
Sbjct: 357 cagtctctgtccgtctcttg 338

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>dbj|AK153509.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830168O20 product:chloride
           intracellular channel 1, full insert sequence
          Length = 1438

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 cagtctctgtccgtctcttg 498
           ||||||||||||||||||||
Sbjct: 646 cagtctctgtccgtctcttg 627

to top

>dbj|AK150382.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830006C20 product:chloride
           intracellular channel 1, full insert sequence
          Length = 1438

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 cagtctctgtccgtctcttg 498
           ||||||||||||||||||||
Sbjct: 646 cagtctctgtccgtctcttg 627

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>dbj|AK167765.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library,
           clone:I730010F14 product:chloride intracellular channel
           1, full insert sequence
          Length = 1166

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 cagtctctgtccgtctcttg 498
           ||||||||||||||||||||
Sbjct: 374 cagtctctgtccgtctcttg 355

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>dbj|AK168262.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched
           library, clone:I730073N12 product:chloride intracellular
           channel 1, full insert sequence
          Length = 980

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 cagtctctgtccgtctcttg 498
           ||||||||||||||||||||
Sbjct: 188 cagtctctgtccgtctcttg 169

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>dbj|AK088809.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430026H17
           product:CHLORIDE INTRACELLULAR CHANNEL PROTEIN 1
           (NUCLEAR CHLORIDE ION CHANNEL 27) (NCC27) (P64 CLCP)
           (CHLORIDE CHANNEL ABP) homolog [Homo sapiens], full
           insert sequence
          Length = 971

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 cagtctctgtccgtctcttg 498
           ||||||||||||||||||||
Sbjct: 179 cagtctctgtccgtctcttg 160

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 393      catgagcaattctggctctcctccccacacatgtggcttcctaatctg 440
                |||||||| ||| || ||||||||||| ||||| ||||| || |||||
Sbjct: 39210524 catgagcagttcaggttctcctccccaaacatgaggctttcttatctg 39210571

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>gb|BC034929.1| Homo sapiens, clone IMAGE:4553293, mRNA
          Length = 1234

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 28  atagcgagtacattttctct 47
           ||||||||||||||||||||
Sbjct: 710 atagcgagtacattttctct 729

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>dbj|AP003313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0035F12
          Length = 153439

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 393   catgagcaattctggctctcctccccacacatgtggcttcctaatctg 440
             |||||||| ||| || ||||||||||| ||||| ||||| || |||||
Sbjct: 86284 catgagcagttcaggttctcctccccaaacatgaggctttcttatctg 86331

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>gb|AC002559.1|AC002559 Homo sapiens Chromosome 10 PAC clone pDJ205g22, complete sequence
          Length = 90815

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   atgttttacagttttgacct 218
             ||||||||||||||||||||
Sbjct: 29111 atgttttacagttttgacct 29092

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>gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, complete sequence
          Length = 179585

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 367    atcggcatctgaagaacatg 386
              ||||||||||||||||||||
Sbjct: 179255 atcggcatctgaagaacatg 179274


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,773,722
Number of Sequences: 3902068
Number of extensions: 5773722
Number of successful extensions: 103858
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103645
Number of HSP's gapped (non-prelim): 209
length of query: 671
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 648
effective length of database: 17,143,297,704
effective search space: 11108856912192
effective search space used: 11108856912192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result