Clone Information

BLAST Search Result

Clone Name	rbags22h12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY103745.1\| Zea mays PCO097601 mRNA sequence	180	4e-42
2	gb\|BT016893.1\| Zea mays clone Contig726 mRNA sequence	165	2e-37
3	ref\|XM_467690.1\| Oryza sativa (japonica cultivar-group), mRNA	155	2e-34
4	dbj\|AK102187.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	155	2e-34
5	dbj\|AK099699.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	155	2e-34
6	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	151	3e-33
7	dbj\|AP004027.3\| Oryza sativa (japonica cultivar-group) genomic D...	151	3e-33
8	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	135	2e-28
9	dbj\|AP005112.3\| Oryza sativa (japonica cultivar-group) genomic D...	135	2e-28
10	gb\|BT018372.1\| Zea mays clone EL01N0306F02.d mRNA sequence	133	8e-28
11	gb\|AY106204.1\| Zea mays PCO074973 mRNA sequence	133	8e-28
12	gb\|AF479040.1\| Triticum aestivum dynamin like Pr6(ADL6) mRNA, pa...	68	4e-08
13	emb\|X01777.1\|HVB3HORD Barley mRNA fragment for B3-hordein	42	2.1
14	gb\|AF016238.1\|HVHORD2 Hordeum vulgare seed storage protein (HORD...	42	2.1
15	gb\|DQ267478.1\| Hordeum vulgare subsp. vulgare clone Hn6 B hordei...	42	2.1
16	gb\|M23836.1\|BLYHOR21A Hordeum vulgare hordein (hor2-1) mRNA, 3' UTR	42	2.1
17	ref\|NM_187920.1\| Oryza sativa (japonica cultivar-group), predic...	40	8.4
18	gb\|CP000148.1\| Geobacter metallireducens GS-15, complete genome	40	8.4
19	gb\|AY659938.1\| Oryza sativa (japonica cultivar-group) RAA1 (RAA1...	40	8.4
20	gb\|AC161176.5\| Mus musculus chromosome 5, clone RP24-295A5, comp...	40	8.4
21	gb\|AC005518.2\| Homo sapiens PAC clone RP4-777G9 from 7, complete...	40	8.4
22	gb\|AC125402.3\| Mus musculus BAC clone RP24-539G2 from chromosome...	40	8.4
23	gb\|BC058201.1\| Xenopus laevis hypothetical protein MGC68557, mRN...	40	8.4
24	gb\|BC041518.1\| Xenopus laevis proteasome (prosome, macropain) su...	40	8.4
25	emb\|AL139810.16\| Human DNA sequence from clone RP11-576G22 on ch...	40	8.4
26	emb\|AL136164.8\| Human DNA sequence from clone RP3-331H24 on chro...	40	8.4
27	emb\|BX537343.8\| Zebrafish DNA sequence from clone CH211-192A19 i...	40	8.4
28	emb\|BX323872.6\| Zebrafish DNA sequence from clone RP71-25E6, com...	40	8.4
29	gb\|CP000240.1\| Synechococcus sp. JA-2-3B'a(2-13), complete genome	40	8.4
30	dbj\|AB089431.1\| Cryptomeria japonica DNA, microsatellite region,...	40	8.4
31	dbj\|AK135105.1\| Mus musculus adult male olfactory brain cDNA, RI...	40	8.4
32	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
33	gb\|AC020699.6\| Homo sapiens BAC clone RP11-131K17 from 4, comple...	40	8.4
34	gb\|AC157947.2\| Mus musculus BAC clone RP23-238L21 from chromosom...	40	8.4
35	gb\|AC139931.5\| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Canc...	40	8.4
36	dbj\|AP002525.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
37	gb\|BC040858.1\| Homo sapiens, clone IMAGE:5528391, mRNA	40	8.4
38	gb\|AC011088.8\|AC011088 Homo sapiens chromosome 11, clone RP11-29...	40	8.4
39	dbj\|AK070626.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.4
40	dbj\|AK058670.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.4
41	gb\|AC132435.3\| Mus musculus BAC clone RP23-223L12 from 10, compl...	40	8.4

>gb|AY103745.1| Zea mays PCO097601 mRNA sequence
          Length = 1567

 Score =  180 bits (91), Expect = 4e-42
 Identities = 205/243 (84%)
 Strand = Plus / Minus

                                                                        
Query: 377  gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 436
            ||||| ||||| ||||||||||||||||||| |||||  ||||| |||||||||||| ||
Sbjct: 1153 gaatcaaaggcagacctccagtcctcacctgagcggcttggtgttcgagggctctcaact 1094

                                                                        
Query: 437  tccggactgtcatttgaataagaggaagcagcagctcgattgtcatggatactaagttgg 496
            || |  |||||||| |||||||||||| |||  || |  || ||||||||||| ||||| 
Sbjct: 1093 tcagtgctgtcattagaataagaggaaacagatgccctgttatcatggatactgagttga 1034

                                                                        
Query: 497  cgtgtgagctttgacaacagagatgattgcttctggtacttttcccttctacgtttagca 556
            || || || |||||||  ||||||||||| || |||||||| |||||||| || ||||||
Sbjct: 1033 cgagtaagttttgacaggagagatgattgtttttggtacttctcccttctgcgcttagca 974

                                                                        
Query: 557  ttgtgatcttcttggagaagctcttcgatttttgcattgctttgcccgcttatcgagctg 616
            || || || ||||| || |||||||| || || |||||||||||||||||||||||||||
Sbjct: 973  ttatggtcctcttgaagcagctcttcaatcttagcattgctttgcccgcttatcgagctg 914

               
Query: 617  tat 619
            |||
Sbjct: 913  tat 911



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 216  tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 275
            ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| || || |
Sbjct: 1338 tcatgaataccaatcagcacgattagtattttggcggtgctggtggcaaccggttcggtg 1279

                                 
Query: 276  tgcgtcggctgctggagttgg 296
            |||| |||||||  |||||||
Sbjct: 1278 tgcgccggctgccagagttgg 1258



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 44   ctatatatttctataaacaactc 66
            |||||||||||||||||||||||
Sbjct: 1507 ctatatatttctataaacaactc 1485



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 319  gcgactatcggcacttctcgaccttgattc 348
            ||||| ||| ||||||||||||||||||||
Sbjct: 1220 gcgaccatcagcacttctcgaccttgattc 1191

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>gb|BT016893.1| Zea mays clone Contig726 mRNA sequence
          Length = 858

 Score =  165 bits (83), Expect = 2e-37
 Identities = 203/243 (83%)
 Strand = Plus / Plus

                                                                       
Query: 377 gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 436
           ||||| || |||||||||||||||||||||| ||||   ||||| ||||||||||| |||
Sbjct: 375 gaatcaaaagctgacctccagtcctcacctgagcgggttggtgttcgagggctctcggct 434

                                                                       
Query: 437 tccggactgtcatttgaataagaggaagcagcagctcgattgtcatggatactaagttgg 496
           || |   ||||||| |||||||||||| |||  || |  || ||||||||||| ||||| 
Sbjct: 435 tcagtggtgtcattagaataagaggaaacagatgccctgttatcatggatactgagttga 494

                                                                       
Query: 497 cgtgtgagctttgacaacagagatgattgcttctggtacttttcccttctacgtttagca 556
           || || || |||||||  ||||||||||| || |||||||| |||||||| || ||||||
Sbjct: 495 cgagtaagttttgacaggagagatgattgtttttggtacttctcccttctgcgcttagca 554

                                                                       
Query: 557 ttgtgatcttcttggagaagctcttcgatttttgcattgctttgcccgcttatcgagctg 616
           || || || ||||| || |||||||| || || |||||||||||||||||||||||||||
Sbjct: 555 ttatggtcctcttgaagcagctcttcaatcttagcattgctttgcccgcttatcgagctg 614

              
Query: 617 tat 619
           |||
Sbjct: 615 tat 617



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 68/81 (83%)
 Strand = Plus / Plus

                                                                       
Query: 216 tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 275
           ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| ||||| |
Sbjct: 190 tcatgaataccaatcagcacgattagtattttggcggtgctggtggcaaccggtttggtg 249

                                
Query: 276 tgcgtcggctgctggagttgg 296
           |||| |||||||  |||||||
Sbjct: 250 tgcgccggctgccagagttgg 270

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>ref|XM_467690.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3215

 Score =  155 bits (78), Expect = 2e-34
 Identities = 200/240 (83%), Gaps = 3/240 (1%)
 Strand = Plus / Minus

                                                                        
Query: 364  gccatttgctgcagaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccg 423
            |||||||| |||||||||||| || |||||||||||||||||||   |||| |  |||||
Sbjct: 2700 gccatttgatgcagaatcgaacgcagacctccagtcctcacctgactggccagaggtccg 2641

                                                                        
Query: 424  agggct---ctcagcttccggactgtcatttgaataagaggaagcagcagctcgattgtc 480
             |||||   ||||||| | | ||| ||||| | ||| || | | ||| ||||| ||||||
Sbjct: 2640 tgggctactctcagctccagaactatcattggtatacgatgcaacagaagctctattgtc 2581

                                                                        
Query: 481  atggatactaagttggcgtgtgagctttgacaacagagatgattgcttctggtacttttc 540
            |||||||||||| || || || ||||||||||| ||||||||||| || |||||||| ||
Sbjct: 2580 atggatactaagctgacgagtaagctttgacaatagagatgattgtttttggtacttctc 2521

                                                                        
Query: 541  ccttctacgtttagcattgtgatcttcttggagaagctcttcgatttttgcattgctttg 600
            || |||||||||||||||||| || ||||||||||| ||||| || ||||||||| ||||
Sbjct: 2520 ccgtctacgtttagcattgtggtcctcttggagaagttcttcaatctttgcattggtttg 2461

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>dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086P03, full
            insert sequence
          Length = 3307

 Score =  155 bits (78), Expect = 2e-34
 Identities = 120/134 (89%)
 Strand = Plus / Minus

                                                                        
Query: 476  ttgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgcttctggtac 535
            |||||||||| ||||||||| || || ||||||||||| ||||||||||| || ||||| 
Sbjct: 2702 ttgtcatggacactaagttgacgggtaagctttgacaagagagatgattgtttttggtat 2643

                                                                        
Query: 536  ttttcccttctacgtttagcattgtgatcttcttggagaagctcttcgatttttgcattg 595
            ||||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||
Sbjct: 2642 ttttcccttctacgtttagcattatggtcctcttgcagaagctcttcaatttttgcattg 2583

                          
Query: 596  ctttgcccgcttat 609
            |||||||| |||||
Sbjct: 2582 ctttgcccacttat 2569



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                        
Query: 377  gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 436
            ||||||||||| |||||||| |||||||||||||||  ||||||||| ||||||||||||
Sbjct: 2795 gaatcgaaggcagacctccaatcctcacctgggcggttgggtgtccgggggctctcagct 2736

              
Query: 437  tc 438
            ||
Sbjct: 2735 tc 2734



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 172  atcagaaacagagcgtg-tgcctagcaagaatacat 206
            ||||||||||| ||||| ||||||||||||||||||
Sbjct: 3023 atcagaaacagggcgtggtgcctagcaagaatacat 2988



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                        
Query: 222  atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 281
            ||||||||||||  || |||||| | || || ||||| || ||||| ||||| || ||||
Sbjct: 2965 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtacgtc 2906

                           
Query: 282  ggctgctggagttgg 296
            |||||| ||||||||
Sbjct: 2905 ggctgccggagttgg 2891



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 47   tatatttctataaacaactc 66
            ||||||||||||||||||||
Sbjct: 3149 tatatttctataaacaactc 3130

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>dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K16, full
            insert sequence
          Length = 3215

 Score =  155 bits (78), Expect = 2e-34
 Identities = 200/240 (83%), Gaps = 3/240 (1%)
 Strand = Plus / Minus

                                                                        
Query: 364  gccatttgctgcagaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccg 423
            |||||||| |||||||||||| || |||||||||||||||||||   |||| |  |||||
Sbjct: 2700 gccatttgatgcagaatcgaacgcagacctccagtcctcacctgactggccagaggtccg 2641

                                                                        
Query: 424  agggct---ctcagcttccggactgtcatttgaataagaggaagcagcagctcgattgtc 480
             |||||   ||||||| | | ||| ||||| | ||| || | | ||| ||||| ||||||
Sbjct: 2640 tgggctactctcagctccagaactatcattggtatacgatgcaacagaagctctattgtc 2581

                                                                        
Query: 481  atggatactaagttggcgtgtgagctttgacaacagagatgattgcttctggtacttttc 540
            |||||||||||| || || || ||||||||||| ||||||||||| || |||||||| ||
Sbjct: 2580 atggatactaagctgacgagtaagctttgacaatagagatgattgtttttggtacttctc 2521

                                                                        
Query: 541  ccttctacgtttagcattgtgatcttcttggagaagctcttcgatttttgcattgctttg 600
            || |||||||||||||||||| || ||||||||||| ||||| || ||||||||| ||||
Sbjct: 2520 ccgtctacgtttagcattgtggtcctcttggagaagttcttcaatctttgcattggtttg 2461

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  151 bits (76), Expect = 3e-33
 Identities = 115/128 (89%)
 Strand = Plus / Minus

                                                                           
Query: 476     ttgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgcttctggtac 535
               |||||||||| ||||||||| || || ||||||||||| ||||||||||| || ||||| 
Sbjct: 7679958 ttgtcatggacactaagttgacgggtaagctttgacaagagagatgattgtttttggtat 7679899

                                                                           
Query: 536     ttttcccttctacgtttagcattgtgatcttcttggagaagctcttcgatttttgcattg 595
               ||||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||
Sbjct: 7679898 ttttcccttctacgtttagcattatggtcctcttgcagaagctcttcaatttttgcattg 7679839

                       
Query: 596     ctttgccc 603
               ||||||||
Sbjct: 7679838 ctttgccc 7679831



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                       
Query: 377     gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctc 432
               ||||||||||| |||||||| |||||||||||||||  ||||||||| ||||||||
Sbjct: 7680299 gaatcgaaggcagacctccaatcctcacctgggcggttgggtgtccgggggctctc 7680244



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                           
Query: 222     atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 281
               ||||||||||||  || |||||| | || || ||||| || ||||| ||||| |||||||
Sbjct: 7680469 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtgcgtc 7680410

                              
Query: 282     ggctgctggagttgg 296
               |||||| ||||||||
Sbjct: 7680409 ggctgccggagttgg 7680395



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                   
Query: 172     atcagaaacagagcgtg-tgcctagcaagaatacat 206
               ||||||||||| ||||| ||||||||||||||||||
Sbjct: 7680527 atcagaaacagggcgtggtgcctagcaagaatacat 7680492



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 47      tatatttctataaacaactc 66
               ||||||||||||||||||||
Sbjct: 7680653 tatatttctataaacaactc 7680634

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>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OJ1136_C11
          Length = 124827

 Score =  151 bits (76), Expect = 3e-33
 Identities = 115/128 (89%)
 Strand = Plus / Minus

                                                                          
Query: 476    ttgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgcttctggtac 535
              |||||||||| ||||||||| || || ||||||||||| ||||||||||| || ||||| 
Sbjct: 103213 ttgtcatggacactaagttgacgggtaagctttgacaagagagatgattgtttttggtat 103154

                                                                          
Query: 536    ttttcccttctacgtttagcattgtgatcttcttggagaagctcttcgatttttgcattg 595
              ||||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||
Sbjct: 103153 ttttcccttctacgtttagcattatggtcctcttgcagaagctcttcaatttttgcattg 103094

                      
Query: 596    ctttgccc 603
              ||||||||
Sbjct: 103093 ctttgccc 103086



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                      
Query: 377    gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctc 432
              ||||||||||| |||||||| |||||||||||||||  ||||||||| ||||||||
Sbjct: 103554 gaatcgaaggcagacctccaatcctcacctgggcggttgggtgtccgggggctctc 103499



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                          
Query: 222    atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 281
              ||||||||||||  || |||||| | || || ||||| || ||||| ||||| |||||||
Sbjct: 103724 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtgcgtc 103665

                             
Query: 282    ggctgctggagttgg 296
              |||||| ||||||||
Sbjct: 103664 ggctgccggagttgg 103650



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                  
Query: 172    atcagaaacagagcgtg-tgcctagcaagaatacat 206
              ||||||||||| ||||| ||||||||||||||||||
Sbjct: 103782 atcagaaacagggcgtggtgcctagcaagaatacat 103747



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     tatatttctataaacaactc 66
              ||||||||||||||||||||
Sbjct: 103908 tatatttctataaacaactc 103889

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  135 bits (68), Expect = 2e-28
 Identities = 116/132 (87%)
 Strand = Plus / Plus

                                                                            
Query: 469      agctcgattgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgctt 528
                ||||| |||||||||||||||||| || || || ||||||||||| ||||||||||| ||
Sbjct: 30881989 agctctattgtcatggatactaagctgacgagtaagctttgacaatagagatgattgttt 30882048

                                                                            
Query: 529      ctggtacttttcccttctacgtttagcattgtgatcttcttggagaagctcttcgatttt 588
                 |||||||| |||| |||||||||||||||||| || ||||||||||| ||||| || ||
Sbjct: 30882049 ttggtacttctcccgtctacgtttagcattgtggtcctcttggagaagttcttcaatctt 30882108

                            
Query: 589      tgcattgctttg 600
                ||||||| ||||
Sbjct: 30882109 tgcattggtttg 30882120



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 364      gccatttgctgcagaatcgaaggctgacctccagtcctcacctg 407
                |||||||| |||||||||||| || |||||||||||||||||||
Sbjct: 30880683 gccatttgatgcagaatcgaacgcagacctccagtcctcacctg 30880726

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>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684F11
          Length = 147731

 Score =  135 bits (68), Expect = 2e-28
 Identities = 116/132 (87%)
 Strand = Plus / Plus

                                                                         
Query: 469   agctcgattgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgctt 528
             ||||| |||||||||||||||||| || || || ||||||||||| ||||||||||| ||
Sbjct: 65566 agctctattgtcatggatactaagctgacgagtaagctttgacaatagagatgattgttt 65625

                                                                         
Query: 529   ctggtacttttcccttctacgtttagcattgtgatcttcttggagaagctcttcgatttt 588
              |||||||| |||| |||||||||||||||||| || ||||||||||| ||||| || ||
Sbjct: 65626 ttggtacttctcccgtctacgtttagcattgtggtcctcttggagaagttcttcaatctt 65685

                         
Query: 589   tgcattgctttg 600
             ||||||| ||||
Sbjct: 65686 tgcattggtttg 65697



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                         
Query: 364   gccatttgctgcagaatcgaaggctgacctccagtcctcacctg 407
             |||||||| |||||||||||| || |||||||||||||||||||
Sbjct: 64260 gccatttgatgcagaatcgaacgcagacctccagtcctcacctg 64303

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>gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence
          Length = 1254

 Score =  133 bits (67), Expect = 8e-28
 Identities = 199/243 (81%)
 Strand = Plus / Minus

                                                                       
Query: 377 gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 436
           ||||| ||||| ||||||||||||||||||| |||||  ||||| |||||||||||| ||
Sbjct: 916 gaatcaaaggcagacctccagtcctcacctgagcggcttggtgttcgagggctctcaact 857

                                                                       
Query: 437 tccggactgtcatttgaataagaggaagcagcagctcgattgtcatggatactaagttgg 496
           || |  | | |||| ||||| |||||| |||  || |  |||| ||  |  || ||||| 
Sbjct: 856 tcagtgcaggcattagaatacgaggaaacagatgccctgttgttataaaggctgagttga 797

                                                                       
Query: 497 cgtgtgagctttgacaacagagatgattgcttctggtacttttcccttctacgtttagca 556
           || || || |||||||  ||||||||||| || |||||||| |||||||| || ||||||
Sbjct: 796 cgagtaagttttgacaggagagatgattgtttttggtacttctcccttctgcgcttagca 737

                                                                       
Query: 557 ttgtgatcttcttggagaagctcttcgatttttgcattgctttgcccgcttatcgagctg 616
           || ||||| ||||| ||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 736 ttatgatcctcttgaagaagctcttcaatcttagcgttgctttgcccgcttatcgagctg 677

              
Query: 617 tat 619
           |||
Sbjct: 676 tat 674



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 216  tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 275
            ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| || || |
Sbjct: 1101 tcatgaataccaatcagcacgattagtattttggcggggctggtggcaaccggttcggtg 1042

                                 
Query: 276  tgcgtcggctgctggagttgg 296
            |||| |||||||  |||||||
Sbjct: 1041 tgcgccggctgccagagttgg 1021



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 319 gcgactatcggcacttctcgaccttgattc 348
           ||||| ||| ||||||||||||||||||||
Sbjct: 983 gcgaccatcagcacttctcgaccttgattc 954

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>gb|AY106204.1| Zea mays PCO074973 mRNA sequence
          Length = 717

 Score =  133 bits (67), Expect = 8e-28
 Identities = 115/131 (87%)
 Strand = Plus / Minus

                                                                       
Query: 470 gctcgattgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgcttc 529
           |||| ||||||||| || || |||||||| |||||||||||||| || |||||||| || 
Sbjct: 559 gctctattgtcatgaatgctgagttggcgagtgagctttgacaagagggatgattgtttt 500

                                                                       
Query: 530 tggtacttttcccttctacgtttagcattgtgatcttcttggagaagctcttcgattttt 589
           ||||| |||||||  ||||||||||||||||| || |||||||| ||||||||||| |||
Sbjct: 499 tggtatttttcccgcctacgtttagcattgtggtcctcttggagtagctcttcgatcttt 440

                      
Query: 590 gcattgctttg 600
           |||||||||||
Sbjct: 439 gcattgctttg 429

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>gb|AF479040.1| Triticum aestivum dynamin like Pr6(ADL6) mRNA, partial cds
          Length = 489

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 535 cttttcccttctacgtttagcattgtgatcttcttggagaagctcttcgatttttgcatt 594
           |||||||| ||| |||||||||||||| || ||||||||||| ||||| ||  |||||||
Sbjct: 402 cttttcccgtctgcgtttagcattgtggtcctcttggagaagttcttcaatccttgcatt 343

                 
Query: 595 gctttg 600
           ||||||
Sbjct: 342 gctttg 337

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>emb|X01777.1|HVB3HORD Barley mRNA fragment for B3-hordein
          Length = 954

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tgattcaactatatatttcta 56
           |||||||||||||||||||||
Sbjct: 833 tgattcaactatatatttcta 813

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>gb|AF016238.1|HVHORD2 Hordeum vulgare seed storage protein (HORDB3a) mRNA 3' end
           sequence, partial cds
          Length = 231

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  tgattcaactatatatttcta 56
           |||||||||||||||||||||
Sbjct: 134 tgattcaactatatatttcta 114

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>gb|DQ267478.1| Hordeum vulgare subsp. vulgare clone Hn6 B hordein gene, complete cds
          Length = 1152

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 36   tgattcaactatatatttcta 56
            |||||||||||||||||||||
Sbjct: 1102 tgattcaactatatatttcta 1082

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>gb|M23836.1|BLYHOR21A Hordeum vulgare hordein (hor2-1) mRNA, 3' UTR
          Length = 165

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 36 tgattcaactatatatttcta 56
          |||||||||||||||||||||
Sbjct: 41 tgattcaactatatatttcta 21

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>ref|NM_187920.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 330

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 148 ctccaccaatctcaccaccc 167
           ||||||||||||||||||||
Sbjct: 48  ctccaccaatctcaccaccc 29

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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 248     ggtggcgctggcggcaaccg 267
               ||||||||||||||||||||
Sbjct: 2802126 ggtggcgctggcggcaaccg 2802145

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>gb|AY659938.1| Oryza sativa (japonica cultivar-group) RAA1 (RAA1) mRNA, complete
           cds
          Length = 729

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 148 ctccaccaatctcaccaccc 167
           ||||||||||||||||||||
Sbjct: 100 ctccaccaatctcaccaccc 81

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>gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, complete sequence
          Length = 157001

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 31    agaattgattcaactatatatttc 54
             |||||||||||||||| |||||||
Sbjct: 41316 agaattgattcaactaaatatttc 41339

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>gb|AC005518.2| Homo sapiens PAC clone RP4-777G9 from 7, complete sequence
          Length = 89097

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 509   gacaacagagatgattgctt 528
             ||||||||||||||||||||
Sbjct: 51575 gacaacagagatgattgctt 51556

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>gb|AC125402.3| Mus musculus BAC clone RP24-539G2 from chromosome 5, complete sequence
          Length = 163773

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 31     agaattgattcaactatatatttc 54
              |||||||||||||||| |||||||
Sbjct: 151929 agaattgattcaactaaatatttc 151952

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>gb|BC058201.1| Xenopus laevis hypothetical protein MGC68557, mRNA (cDNA clone
           MGC:68557 IMAGE:4031378), complete cds
          Length = 971

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  tgcgcatgcatacacactgt 94
           ||||||||||||||||||||
Sbjct: 422 tgcgcatgcatacacactgt 441

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>gb|BC041518.1| Xenopus laevis proteasome (prosome, macropain) subunit, alpha type,
           3, mRNA (cDNA clone MGC:53724 IMAGE:4930219), complete
           cds
          Length = 974

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  tgcgcatgcatacacactgt 94
           ||||||||||||||||||||
Sbjct: 421 tgcgcatgcatacacactgt 440

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>emb|AL139810.16| Human DNA sequence from clone RP11-576G22 on chromosome Xp11.23-11.4
             Contains the 5' end of a novel gene, complete sequence
          Length = 27299

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   gaatacataataataaatca 218
             ||||||||||||||||||||
Sbjct: 26365 gaatacataataataaatca 26384

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>emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chromosome 6 Contains the
             5' end of a novel gene, the gene for a novel protein
             similar to opioid growth factor receptor and a CpG island,
             complete sequence
          Length = 108253

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 46    atatatttctataaacaactctgg 69
             |||||||||||||||| |||||||
Sbjct: 20311 atatatttctataaactactctgg 20334

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>emb|BX537343.8| Zebrafish DNA sequence from clone CH211-192A19 in linkage group 16,
             complete sequence
          Length = 59017

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ttcaactatatatttctata 58
             ||||||||||||||||||||
Sbjct: 40475 ttcaactatatatttctata 40456

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>emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, complete sequence
          Length = 184178

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     ttcaactatatatttctata 58
              ||||||||||||||||||||
Sbjct: 181477 ttcaactatatatttctata 181496

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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 355    cggggctgggccatttgctgcaga 378
              ||||||||||||| ||||||||||
Sbjct: 771205 cggggctgggccacttgctgcaga 771228

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>dbj|AB089431.1| Cryptomeria japonica DNA, microsatellite region, clone:Cjg0193F
          Length = 309

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 20  aaccaatagagagaattgat 39
           ||||||||||||||||||||
Sbjct: 139 aaccaatagagagaattgat 120

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>dbj|AK135105.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
           enriched library, clone:6430589P07
           product:unclassifiable, full insert sequence
          Length = 2062

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 572 agaagctcttcgatttttgc 591
           ||||||||||||||||||||
Sbjct: 280 agaagctcttcgatttttgc 261

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 148     ctccaccaatctcaccaccc 167
               ||||||||||||||||||||
Sbjct: 8585799 ctccaccaatctcaccaccc 8585818

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>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence
          Length = 186961

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   aatacataataataaatcat 219
             ||||||||||||||||||||
Sbjct: 52428 aatacataataataaatcat 52447

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>gb|AC157947.2| Mus musculus BAC clone RP23-238L21 from chromosome 9, complete sequence
          Length = 174016

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 572    agaagctcttcgatttttgc 591
              ||||||||||||||||||||
Sbjct: 131350 agaagctcttcgatttttgc 131331

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>gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 94635

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   aatacataataataaatcat 219
             ||||||||||||||||||||
Sbjct: 56035 aatacataataataaatcat 56054

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>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0462H08
          Length = 139152

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   ctccaccaatctcaccaccc 167
             ||||||||||||||||||||
Sbjct: 17994 ctccaccaatctcaccaccc 18013

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>gb|BC040858.1| Homo sapiens, clone IMAGE:5528391, mRNA
          Length = 2228

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 199  gaatacataataataaatca 218
            ||||||||||||||||||||
Sbjct: 2170 gaatacataataataaatca 2189

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>gb|AC011088.8|AC011088 Homo sapiens chromosome 11, clone RP11-292E14, complete sequence
          Length = 164991

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 526   cttctggtacttttcccttc 545
             ||||||||||||||||||||
Sbjct: 18099 cttctggtacttttcccttc 18080

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>dbj|AK070626.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056F13, full
           insert sequence
          Length = 786

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 148 ctccaccaatctcaccaccc 167
           ||||||||||||||||||||
Sbjct: 144 ctccaccaatctcaccaccc 125

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>dbj|AK058670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H02,
          full insert sequence
          Length = 239

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 47 tatatttctataaacaactc 66
          ||||||||||||||||||||
Sbjct: 78 tatatttctataaacaactc 59

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>gb|AC132435.3| Mus musculus BAC clone RP23-223L12 from 10, complete sequence
          Length = 198383

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 457    agaggaagcagcagctcgattgtcatgg 484
              |||||||||||||||| || ||||||||
Sbjct: 113406 agaggaagcagcagctggaatgtcatgg 113433


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,472,683
Number of Sequences: 3902068
Number of extensions: 5472683
Number of successful extensions: 105859
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105591
Number of HSP's gapped (non-prelim): 266
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result