ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY103745.1| Zea mays PCO097601 mRNA sequence 208 2e-50
2gb|BT016893.1| Zea mays clone Contig726 mRNA sequence 192 1e-45
3dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 1e-41
4ref|XM_467690.1| Oryza sativa (japonica cultivar-group), mRNA 165 2e-37
5dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 2e-37
6gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence 161 4e-36
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
8dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
10dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
11gb|AY106204.1| Zea mays PCO074973 mRNA sequence 133 8e-28
12gb|AF479040.1| Triticum aestivum dynamin like Pr6(ADL6) mRNA, pa... 94 7e-16
13emb|X01777.1|HVB3HORD Barley mRNA fragment for B3-hordein 42 2.2
14gb|AF016238.1|HVHORD2 Hordeum vulgare seed storage protein (HORD... 42 2.2
15gb|DQ267478.1| Hordeum vulgare subsp. vulgare clone Hn6 B hordei... 42 2.2
16gb|M23836.1|BLYHOR21A Hordeum vulgare hordein (hor2-1) mRNA, 3' UTR 42 2.2
17ref|NM_187920.1| Oryza sativa (japonica cultivar-group), predic... 40 8.8
18gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 8.8
19gb|AY659938.1| Oryza sativa (japonica cultivar-group) RAA1 (RAA1... 40 8.8
20gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, comp... 40 8.8
21gb|AC005518.2| Homo sapiens PAC clone RP4-777G9 from 7, complete... 40 8.8
22gb|AC125402.3| Mus musculus BAC clone RP24-539G2 from chromosome... 40 8.8
23gb|BC058201.1| Xenopus laevis hypothetical protein MGC68557, mRN... 40 8.8
24gb|BC041518.1| Xenopus laevis proteasome (prosome, macropain) su... 40 8.8
25emb|AL139810.16| Human DNA sequence from clone RP11-576G22 on ch... 40 8.8
26emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chro... 40 8.8
27emb|BX537343.8| Zebrafish DNA sequence from clone CH211-192A19 i... 40 8.8
28emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, com... 40 8.8
29gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 8.8
30dbj|AB089431.1| Cryptomeria japonica DNA, microsatellite region,... 40 8.8
31dbj|AK135105.1| Mus musculus adult male olfactory brain cDNA, RI... 40 8.8
32dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
33gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, comple... 40 8.8
34gb|AC157947.2| Mus musculus BAC clone RP23-238L21 from chromosom... 40 8.8
35gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Canc... 40 8.8
36dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
37gb|BC040858.1| Homo sapiens, clone IMAGE:5528391, mRNA 40 8.8
38gb|AC011088.8|AC011088 Homo sapiens chromosome 11, clone RP11-29... 40 8.8
39dbj|AK070626.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.8
40dbj|AK058670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.8
41gb|AC132435.3| Mus musculus BAC clone RP23-223L12 from 10, compl... 40 8.8 
>gb|AY103745.1| Zea mays PCO097601 mRNA sequence
          Length = 1567

 Score =  208 bits (105), Expect = 2e-50
 Identities = 231/273 (84%)
 Strand = Plus / Minus

                                                                        
Query: 376  gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 435
            ||||| ||||| ||||||||||||||||||| |||||  ||||| |||||||||||| ||
Sbjct: 1153 gaatcaaaggcagacctccagtcctcacctgagcggcttggtgttcgagggctctcaact 1094

                                                                        
Query: 436  tccggactgtcatttgaataagaggaagcagcagctcgattgtcatggatactaagttgg 495
            || |  |||||||| |||||||||||| |||  || |  || ||||||||||| ||||| 
Sbjct: 1093 tcagtgctgtcattagaataagaggaaacagatgccctgttatcatggatactgagttga 1034

                                                                        
Query: 496  cgtgtgagctttgacaacagagatgattgcttctggtacttttcccttctacgtttagca 555
            || || || |||||||  ||||||||||| || |||||||| |||||||| || ||||||
Sbjct: 1033 cgagtaagttttgacaggagagatgattgtttttggtacttctcccttctgcgcttagca 974

                                                                        
Query: 556  ttgtgatcttcttggagaagctcttcgatttttgcattgctttgcccgcttatcgagctg 615
            || || || ||||| || |||||||| || || |||||||||||||||||||||||||||
Sbjct: 973  ttatggtcctcttgaagcagctcttcaatcttagcattgctttgcccgcttatcgagctg 914

                                             
Query: 616  tatagctggttcaacatatcctcctttgctttc 648
            ||||||||||| | ||| || ||||||||||||
Sbjct: 913  tatagctggttaagcatgtcttcctttgctttc 881



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 215  tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 274
            ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| || || |
Sbjct: 1338 tcatgaataccaatcagcacgattagtattttggcggtgctggtggcaaccggttcggtg 1279

                                 
Query: 275  tgcgtcggctgctggagttgg 295
            |||| |||||||  |||||||
Sbjct: 1278 tgcgccggctgccagagttgg 1258



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 43   ctatatatttctataaacaactc 65
            |||||||||||||||||||||||
Sbjct: 1507 ctatatatttctataaacaactc 1485



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 318  gcgactatcggcacttctcgaccttgattc 347
            ||||| ||| ||||||||||||||||||||
Sbjct: 1220 gcgaccatcagcacttctcgaccttgattc 1191
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>gb|BT016893.1| Zea mays clone Contig726 mRNA sequence
          Length = 858

 Score =  192 bits (97), Expect = 1e-45
 Identities = 229/273 (83%)
 Strand = Plus / Plus

                                                                       
Query: 376 gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 435
           ||||| || |||||||||||||||||||||| ||||   ||||| ||||||||||| |||
Sbjct: 375 gaatcaaaagctgacctccagtcctcacctgagcgggttggtgttcgagggctctcggct 434

                                                                       
Query: 436 tccggactgtcatttgaataagaggaagcagcagctcgattgtcatggatactaagttgg 495
           || |   ||||||| |||||||||||| |||  || |  || ||||||||||| ||||| 
Sbjct: 435 tcagtggtgtcattagaataagaggaaacagatgccctgttatcatggatactgagttga 494

                                                                       
Query: 496 cgtgtgagctttgacaacagagatgattgcttctggtacttttcccttctacgtttagca 555
           || || || |||||||  ||||||||||| || |||||||| |||||||| || ||||||
Sbjct: 495 cgagtaagttttgacaggagagatgattgtttttggtacttctcccttctgcgcttagca 554

                                                                       
Query: 556 ttgtgatcttcttggagaagctcttcgatttttgcattgctttgcccgcttatcgagctg 615
           || || || ||||| || |||||||| || || |||||||||||||||||||||||||||
Sbjct: 555 ttatggtcctcttgaagcagctcttcaatcttagcattgctttgcccgcttatcgagctg 614

                                            
Query: 616 tatagctggttcaacatatcctcctttgctttc 648
           ||||||||||| | ||| || ||||||||||||
Sbjct: 615 tatagctggttaagcatgtcttcctttgctttc 647



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 68/81 (83%)
 Strand = Plus / Plus

                                                                       
Query: 215 tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 274
           ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| ||||| |
Sbjct: 190 tcatgaataccaatcagcacgattagtattttggcggtgctggtggcaaccggtttggtg 249

                                
Query: 275 tgcgtcggctgctggagttgg 295
           |||| |||||||  |||||||
Sbjct: 250 tgcgccggctgccagagttgg 270
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>dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086P03, full
            insert sequence
          Length = 3307

 Score =  178 bits (90), Expect = 1e-41
 Identities = 150/170 (88%)
 Strand = Plus / Minus

                                                                        
Query: 475  ttgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgcttctggtac 534
            |||||||||| ||||||||| || || ||||||||||| ||||||||||| || ||||| 
Sbjct: 2702 ttgtcatggacactaagttgacgggtaagctttgacaagagagatgattgtttttggtat 2643

                                                                        
Query: 535  ttttcccttctacgtttagcattgtgatcttcttggagaagctcttcgatttttgcattg 594
            ||||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||
Sbjct: 2642 ttttcccttctacgtttagcattatggtcctcttgcagaagctcttcaatttttgcattg 2583

                                                              
Query: 595  ctttgcccgcttatcgagctgtatagctggttcaacatatcctcctttgc 644
            |||||||| ||||| || || ||||||||||| | |||||| ||||||||
Sbjct: 2582 ctttgcccacttattgaactatatagctggtttagcatatcttcctttgc 2533



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                        
Query: 376  gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 435
            ||||||||||| |||||||| |||||||||||||||  ||||||||| ||||||||||||
Sbjct: 2795 gaatcgaaggcagacctccaatcctcacctgggcggttgggtgtccgggggctctcagct 2736

              
Query: 436  tc 437
            ||
Sbjct: 2735 tc 2734



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 171  atcagaaacagagcgtg-tgcctagcaagaatacat 205
            ||||||||||| ||||| ||||||||||||||||||
Sbjct: 3023 atcagaaacagggcgtggtgcctagcaagaatacat 2988



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                        
Query: 221  atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 280
            ||||||||||||  || |||||| | || || ||||| || ||||| ||||| || ||||
Sbjct: 2965 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtacgtc 2906

                           
Query: 281  ggctgctggagttgg 295
            |||||| ||||||||
Sbjct: 2905 ggctgccggagttgg 2891



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 46   tatatttctataaacaactc 65
            ||||||||||||||||||||
Sbjct: 3149 tatatttctataaacaactc 3130
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>ref|XM_467690.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3215

 Score =  165 bits (83), Expect = 2e-37
 Identities = 238/289 (82%), Gaps = 3/289 (1%)
 Strand = Plus / Minus

                                                                        
Query: 363  gccatttgctgcagaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccg 422
            |||||||| |||||||||||| || |||||||||||||||||||   |||| |  |||||
Sbjct: 2700 gccatttgatgcagaatcgaacgcagacctccagtcctcacctgactggccagaggtccg 2641

                                                                        
Query: 423  agggct---ctcagcttccggactgtcatttgaataagaggaagcagcagctcgattgtc 479
             |||||   ||||||| | | ||| ||||| | ||| || | | ||| ||||| ||||||
Sbjct: 2640 tgggctactctcagctccagaactatcattggtatacgatgcaacagaagctctattgtc 2581

                                                                        
Query: 480  atggatactaagttggcgtgtgagctttgacaacagagatgattgcttctggtacttttc 539
            |||||||||||| || || || ||||||||||| ||||||||||| || |||||||| ||
Sbjct: 2580 atggatactaagctgacgagtaagctttgacaatagagatgattgtttttggtacttctc 2521

                                                                        
Query: 540  ccttctacgtttagcattgtgatcttcttggagaagctcttcgatttttgcattgctttg 599
            || |||||||||||||||||| || ||||||||||| ||||| || ||||||||| ||||
Sbjct: 2520 ccgtctacgtttagcattgtggtcctcttggagaagttcttcaatctttgcattggtttg 2461

                                                             
Query: 600  cccgcttatcgagctgtatagctggttcaacatatcctcctttgctttc 648
              | |||||   |||||| ||||| || | |||||| ||||||||||||
Sbjct: 2460 agcacttattttgctgtagagctgatttagcatatcttcctttgctttc 2412
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>dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K16, full
            insert sequence
          Length = 3215

 Score =  165 bits (83), Expect = 2e-37
 Identities = 238/289 (82%), Gaps = 3/289 (1%)
 Strand = Plus / Minus

                                                                        
Query: 363  gccatttgctgcagaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccg 422
            |||||||| |||||||||||| || |||||||||||||||||||   |||| |  |||||
Sbjct: 2700 gccatttgatgcagaatcgaacgcagacctccagtcctcacctgactggccagaggtccg 2641

                                                                        
Query: 423  agggct---ctcagcttccggactgtcatttgaataagaggaagcagcagctcgattgtc 479
             |||||   ||||||| | | ||| ||||| | ||| || | | ||| ||||| ||||||
Sbjct: 2640 tgggctactctcagctccagaactatcattggtatacgatgcaacagaagctctattgtc 2581

                                                                        
Query: 480  atggatactaagttggcgtgtgagctttgacaacagagatgattgcttctggtacttttc 539
            |||||||||||| || || || ||||||||||| ||||||||||| || |||||||| ||
Sbjct: 2580 atggatactaagctgacgagtaagctttgacaatagagatgattgtttttggtacttctc 2521

                                                                        
Query: 540  ccttctacgtttagcattgtgatcttcttggagaagctcttcgatttttgcattgctttg 599
            || |||||||||||||||||| || ||||||||||| ||||| || ||||||||| ||||
Sbjct: 2520 ccgtctacgtttagcattgtggtcctcttggagaagttcttcaatctttgcattggtttg 2461

                                                             
Query: 600  cccgcttatcgagctgtatagctggttcaacatatcctcctttgctttc 648
              | |||||   |||||| ||||| || | |||||| ||||||||||||
Sbjct: 2460 agcacttattttgctgtagagctgatttagcatatcttcctttgctttc 2412
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>gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence
          Length = 1254

 Score =  161 bits (81), Expect = 4e-36
 Identities = 225/273 (82%)
 Strand = Plus / Minus

                                                                       
Query: 376 gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 435
           ||||| ||||| ||||||||||||||||||| |||||  ||||| |||||||||||| ||
Sbjct: 916 gaatcaaaggcagacctccagtcctcacctgagcggcttggtgttcgagggctctcaact 857

                                                                       
Query: 436 tccggactgtcatttgaataagaggaagcagcagctcgattgtcatggatactaagttgg 495
           || |  | | |||| ||||| |||||| |||  || |  |||| ||  |  || ||||| 
Sbjct: 856 tcagtgcaggcattagaatacgaggaaacagatgccctgttgttataaaggctgagttga 797

                                                                       
Query: 496 cgtgtgagctttgacaacagagatgattgcttctggtacttttcccttctacgtttagca 555
           || || || |||||||  ||||||||||| || |||||||| |||||||| || ||||||
Sbjct: 796 cgagtaagttttgacaggagagatgattgtttttggtacttctcccttctgcgcttagca 737

                                                                       
Query: 556 ttgtgatcttcttggagaagctcttcgatttttgcattgctttgcccgcttatcgagctg 615
           || ||||| ||||| ||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 736 ttatgatcctcttgaagaagctcttcaatcttagcgttgctttgcccgcttatcgagctg 677

                                            
Query: 616 tatagctggttcaacatatcctcctttgctttc 648
           ||||||||||| | ||| || ||||||||||||
Sbjct: 676 tatagctggttaagcatgtcttcctttgctttc 644



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 215  tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 274
            ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| || || |
Sbjct: 1101 tcatgaataccaatcagcacgattagtattttggcggggctggtggcaaccggttcggtg 1042

                                 
Query: 275  tgcgtcggctgctggagttgg 295
            |||| |||||||  |||||||
Sbjct: 1041 tgcgccggctgccagagttgg 1021



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 318 gcgactatcggcacttctcgaccttgattc 347
           ||||| ||| ||||||||||||||||||||
Sbjct: 983 gcgaccatcagcacttctcgaccttgattc 954
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  151 bits (76), Expect = 3e-33
 Identities = 115/128 (89%)
 Strand = Plus / Minus

                                                                           
Query: 475     ttgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgcttctggtac 534
               |||||||||| ||||||||| || || ||||||||||| ||||||||||| || ||||| 
Sbjct: 7679958 ttgtcatggacactaagttgacgggtaagctttgacaagagagatgattgtttttggtat 7679899

                                                                           
Query: 535     ttttcccttctacgtttagcattgtgatcttcttggagaagctcttcgatttttgcattg 594
               ||||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||
Sbjct: 7679898 ttttcccttctacgtttagcattatggtcctcttgcagaagctcttcaatttttgcattg 7679839

                       
Query: 595     ctttgccc 602
               ||||||||
Sbjct: 7679838 ctttgccc 7679831



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                       
Query: 376     gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctc 431
               ||||||||||| |||||||| |||||||||||||||  ||||||||| ||||||||
Sbjct: 7680299 gaatcgaaggcagacctccaatcctcacctgggcggttgggtgtccgggggctctc 7680244



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                           
Query: 221     atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 280
               ||||||||||||  || |||||| | || || ||||| || ||||| ||||| |||||||
Sbjct: 7680469 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtgcgtc 7680410

                              
Query: 281     ggctgctggagttgg 295
               |||||| ||||||||
Sbjct: 7680409 ggctgccggagttgg 7680395



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                   
Query: 171     atcagaaacagagcgtg-tgcctagcaagaatacat 205
               ||||||||||| ||||| ||||||||||||||||||
Sbjct: 7680527 atcagaaacagggcgtggtgcctagcaagaatacat 7680492



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 46      tatatttctataaacaactc 65
               ||||||||||||||||||||
Sbjct: 7680653 tatatttctataaacaactc 7680634
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>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OJ1136_C11
          Length = 124827

 Score =  151 bits (76), Expect = 3e-33
 Identities = 115/128 (89%)
 Strand = Plus / Minus

                                                                          
Query: 475    ttgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgcttctggtac 534
              |||||||||| ||||||||| || || ||||||||||| ||||||||||| || ||||| 
Sbjct: 103213 ttgtcatggacactaagttgacgggtaagctttgacaagagagatgattgtttttggtat 103154

                                                                          
Query: 535    ttttcccttctacgtttagcattgtgatcttcttggagaagctcttcgatttttgcattg 594
              ||||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||
Sbjct: 103153 ttttcccttctacgtttagcattatggtcctcttgcagaagctcttcaatttttgcattg 103094

                      
Query: 595    ctttgccc 602
              ||||||||
Sbjct: 103093 ctttgccc 103086



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                      
Query: 376    gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctc 431
              ||||||||||| |||||||| |||||||||||||||  ||||||||| ||||||||
Sbjct: 103554 gaatcgaaggcagacctccaatcctcacctgggcggttgggtgtccgggggctctc 103499



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                          
Query: 221    atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 280
              ||||||||||||  || |||||| | || || ||||| || ||||| ||||| |||||||
Sbjct: 103724 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtgcgtc 103665

                             
Query: 281    ggctgctggagttgg 295
              |||||| ||||||||
Sbjct: 103664 ggctgccggagttgg 103650



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                  
Query: 171    atcagaaacagagcgtg-tgcctagcaagaatacat 205
              ||||||||||| ||||| ||||||||||||||||||
Sbjct: 103782 atcagaaacagggcgtggtgcctagcaagaatacat 103747



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     tatatttctataaacaactc 65
              ||||||||||||||||||||
Sbjct: 103908 tatatttctataaacaactc 103889
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  135 bits (68), Expect = 2e-28
 Identities = 116/132 (87%)
 Strand = Plus / Plus

                                                                            
Query: 468      agctcgattgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgctt 527
                ||||| |||||||||||||||||| || || || ||||||||||| ||||||||||| ||
Sbjct: 30881989 agctctattgtcatggatactaagctgacgagtaagctttgacaatagagatgattgttt 30882048

                                                                            
Query: 528      ctggtacttttcccttctacgtttagcattgtgatcttcttggagaagctcttcgatttt 587
                 |||||||| |||| |||||||||||||||||| || ||||||||||| ||||| || ||
Sbjct: 30882049 ttggtacttctcccgtctacgtttagcattgtggtcctcttggagaagttcttcaatctt 30882108

                            
Query: 588      tgcattgctttg 599
                ||||||| ||||
Sbjct: 30882109 tgcattggtttg 30882120



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 363      gccatttgctgcagaatcgaaggctgacctccagtcctcacctg 406
                |||||||| |||||||||||| || |||||||||||||||||||
Sbjct: 30880683 gccatttgatgcagaatcgaacgcagacctccagtcctcacctg 30880726
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>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684F11
          Length = 147731

 Score =  135 bits (68), Expect = 2e-28
 Identities = 116/132 (87%)
 Strand = Plus / Plus

                                                                         
Query: 468   agctcgattgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgctt 527
             ||||| |||||||||||||||||| || || || ||||||||||| ||||||||||| ||
Sbjct: 65566 agctctattgtcatggatactaagctgacgagtaagctttgacaatagagatgattgttt 65625

                                                                         
Query: 528   ctggtacttttcccttctacgtttagcattgtgatcttcttggagaagctcttcgatttt 587
              |||||||| |||| |||||||||||||||||| || ||||||||||| ||||| || ||
Sbjct: 65626 ttggtacttctcccgtctacgtttagcattgtggtcctcttggagaagttcttcaatctt 65685

                         
Query: 588   tgcattgctttg 599
             ||||||| ||||
Sbjct: 65686 tgcattggtttg 65697



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                         
Query: 363   gccatttgctgcagaatcgaaggctgacctccagtcctcacctg 406
             |||||||| |||||||||||| || |||||||||||||||||||
Sbjct: 64260 gccatttgatgcagaatcgaacgcagacctccagtcctcacctg 64303
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>gb|AY106204.1| Zea mays PCO074973 mRNA sequence
          Length = 717

 Score =  133 bits (67), Expect = 8e-28
 Identities = 115/131 (87%)
 Strand = Plus / Minus

                                                                       
Query: 469 gctcgattgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgcttc 528
           |||| ||||||||| || || |||||||| |||||||||||||| || |||||||| || 
Sbjct: 559 gctctattgtcatgaatgctgagttggcgagtgagctttgacaagagggatgattgtttt 500

                                                                       
Query: 529 tggtacttttcccttctacgtttagcattgtgatcttcttggagaagctcttcgattttt 588
           ||||| |||||||  ||||||||||||||||| || |||||||| ||||||||||| |||
Sbjct: 499 tggtatttttcccgcctacgtttagcattgtggtcctcttggagtagctcttcgatcttt 440

                      
Query: 589 gcattgctttg 599
           |||||||||||
Sbjct: 439 gcattgctttg 429
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>gb|AF479040.1| Triticum aestivum dynamin like Pr6(ADL6) mRNA, partial cds
          Length = 489

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                       
Query: 534 cttttcccttctacgtttagcattgtgatcttcttggagaagctcttcgatttttgcatt 593
           |||||||| ||| |||||||||||||| || ||||||||||| ||||| ||  |||||||
Sbjct: 402 cttttcccgtctgcgtttagcattgtggtcctcttggagaagttcttcaatccttgcatt 343

                                                                  
Query: 594 gctttgcccgcttatcgagctgtatagctggttcaacatatcctcctttgctttc 648
           ||||||    ||||| |||||||| |||||||| | |||||| ||||||||||||
Sbjct: 342 gctttgtgaacttattgagctgtacagctggtttagcatatcttcctttgctttc 288
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>emb|X01777.1|HVB3HORD Barley mRNA fragment for B3-hordein
          Length = 954

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 35  tgattcaactatatatttcta 55
           |||||||||||||||||||||
Sbjct: 833 tgattcaactatatatttcta 813
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>gb|AF016238.1|HVHORD2 Hordeum vulgare seed storage protein (HORDB3a) mRNA 3' end
           sequence, partial cds
          Length = 231

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 35  tgattcaactatatatttcta 55
           |||||||||||||||||||||
Sbjct: 134 tgattcaactatatatttcta 114
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>gb|DQ267478.1| Hordeum vulgare subsp. vulgare clone Hn6 B hordein gene, complete cds
          Length = 1152

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 35   tgattcaactatatatttcta 55
            |||||||||||||||||||||
Sbjct: 1102 tgattcaactatatatttcta 1082
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>gb|M23836.1|BLYHOR21A Hordeum vulgare hordein (hor2-1) mRNA, 3' UTR
          Length = 165

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 35 tgattcaactatatatttcta 55
          |||||||||||||||||||||
Sbjct: 41 tgattcaactatatatttcta 21
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>ref|NM_187920.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 330

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 ctccaccaatctcaccaccc 166
           ||||||||||||||||||||
Sbjct: 48  ctccaccaatctcaccaccc 29
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 247     ggtggcgctggcggcaaccg 266
               ||||||||||||||||||||
Sbjct: 2802126 ggtggcgctggcggcaaccg 2802145
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>gb|AY659938.1| Oryza sativa (japonica cultivar-group) RAA1 (RAA1) mRNA, complete
           cds
          Length = 729

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 ctccaccaatctcaccaccc 166
           ||||||||||||||||||||
Sbjct: 100 ctccaccaatctcaccaccc 81
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>gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, complete sequence
          Length = 157001

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 30    agaattgattcaactatatatttc 53
             |||||||||||||||| |||||||
Sbjct: 41316 agaattgattcaactaaatatttc 41339
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>gb|AC005518.2| Homo sapiens PAC clone RP4-777G9 from 7, complete sequence
          Length = 89097

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 508   gacaacagagatgattgctt 527
             ||||||||||||||||||||
Sbjct: 51575 gacaacagagatgattgctt 51556
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>gb|AC125402.3| Mus musculus BAC clone RP24-539G2 from chromosome 5, complete sequence
          Length = 163773

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 30     agaattgattcaactatatatttc 53
              |||||||||||||||| |||||||
Sbjct: 151929 agaattgattcaactaaatatttc 151952
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>gb|BC058201.1| Xenopus laevis hypothetical protein MGC68557, mRNA (cDNA clone
           MGC:68557 IMAGE:4031378), complete cds
          Length = 971

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 74  tgcgcatgcatacacactgt 93
           ||||||||||||||||||||
Sbjct: 422 tgcgcatgcatacacactgt 441
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>gb|BC041518.1| Xenopus laevis proteasome (prosome, macropain) subunit, alpha type,
           3, mRNA (cDNA clone MGC:53724 IMAGE:4930219), complete
           cds
          Length = 974

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 74  tgcgcatgcatacacactgt 93
           ||||||||||||||||||||
Sbjct: 421 tgcgcatgcatacacactgt 440
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>emb|AL139810.16| Human DNA sequence from clone RP11-576G22 on chromosome Xp11.23-11.4
             Contains the 5' end of a novel gene, complete sequence
          Length = 27299

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   gaatacataataataaatca 217
             ||||||||||||||||||||
Sbjct: 26365 gaatacataataataaatca 26384
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>emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chromosome 6 Contains the
             5' end of a novel gene, the gene for a novel protein
             similar to opioid growth factor receptor and a CpG island,
             complete sequence
          Length = 108253

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    atatatttctataaacaactctgg 68
             |||||||||||||||| |||||||
Sbjct: 20311 atatatttctataaactactctgg 20334
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>emb|BX537343.8| Zebrafish DNA sequence from clone CH211-192A19 in linkage group 16,
             complete sequence
          Length = 59017

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    ttcaactatatatttctata 57
             ||||||||||||||||||||
Sbjct: 40475 ttcaactatatatttctata 40456
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>emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, complete sequence
          Length = 184178

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     ttcaactatatatttctata 57
              ||||||||||||||||||||
Sbjct: 181477 ttcaactatatatttctata 181496
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 354    cggggctgggccatttgctgcaga 377
              ||||||||||||| ||||||||||
Sbjct: 771205 cggggctgggccacttgctgcaga 771228
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>dbj|AB089431.1| Cryptomeria japonica DNA, microsatellite region, clone:Cjg0193F
          Length = 309

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  aaccaatagagagaattgat 38
           ||||||||||||||||||||
Sbjct: 139 aaccaatagagagaattgat 120
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>dbj|AK135105.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
           enriched library, clone:6430589P07
           product:unclassifiable, full insert sequence
          Length = 2062

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 571 agaagctcttcgatttttgc 590
           ||||||||||||||||||||
Sbjct: 280 agaagctcttcgatttttgc 261
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 147     ctccaccaatctcaccaccc 166
               ||||||||||||||||||||
Sbjct: 8585799 ctccaccaatctcaccaccc 8585818
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>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence
          Length = 186961

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   aatacataataataaatcat 218
             ||||||||||||||||||||
Sbjct: 52428 aatacataataataaatcat 52447
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>gb|AC157947.2| Mus musculus BAC clone RP23-238L21 from chromosome 9, complete sequence
          Length = 174016

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 571    agaagctcttcgatttttgc 590
              ||||||||||||||||||||
Sbjct: 131350 agaagctcttcgatttttgc 131331
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>gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 94635

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   aatacataataataaatcat 218
             ||||||||||||||||||||
Sbjct: 56035 aatacataataataaatcat 56054
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>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0462H08
          Length = 139152

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   ctccaccaatctcaccaccc 166
             ||||||||||||||||||||
Sbjct: 17994 ctccaccaatctcaccaccc 18013
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>gb|BC040858.1| Homo sapiens, clone IMAGE:5528391, mRNA
          Length = 2228

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 198  gaatacataataataaatca 217
            ||||||||||||||||||||
Sbjct: 2170 gaatacataataataaatca 2189
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>gb|AC011088.8|AC011088 Homo sapiens chromosome 11, clone RP11-292E14, complete sequence
          Length = 164991

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 525   cttctggtacttttcccttc 544
             ||||||||||||||||||||
Sbjct: 18099 cttctggtacttttcccttc 18080
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>dbj|AK070626.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056F13, full
           insert sequence
          Length = 786

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 ctccaccaatctcaccaccc 166
           ||||||||||||||||||||
Sbjct: 144 ctccaccaatctcaccaccc 125
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>dbj|AK058670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H02,
          full insert sequence
          Length = 239

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 46 tatatttctataaacaactc 65
          ||||||||||||||||||||
Sbjct: 78 tatatttctataaacaactc 59
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>gb|AC132435.3| Mus musculus BAC clone RP23-223L12 from 10, complete sequence
          Length = 198383

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 456    agaggaagcagcagctcgattgtcatgg 483
              |||||||||||||||| || ||||||||
Sbjct: 113406 agaggaagcagcagctggaatgtcatgg 113433


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,750,611
Number of Sequences: 3902068
Number of extensions: 5750611
Number of successful extensions: 120769
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120487
Number of HSP's gapped (non-prelim): 277
length of query: 648
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 625
effective length of database: 17,143,297,704
effective search space: 10714561065000
effective search space used: 10714561065000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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