| Clone Name | rbags22h06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113M01, full insert sequence Length = 2519 Score = 258 bits (130), Expect = 2e-65 Identities = 283/334 (84%) Strand = Plus / Minus Query: 251 tggcttaactgctcgcagttataggttcagtggccttcctcagccattccttctcctgaa 310 ||||||||| |||| |||| ||||| ||||| || ||||||||||||||||||||||| Sbjct: 2014 tggcttaacagctcacagtaataggctcagtagctttcctcagccattccttctcctgct 1955 Query: 311 catttaggtaagactccaagattttctggcagtcggagtggtacacgtttacccattcga 370 |||| ||||||| || ||| || | |||| || ||||| ||| |||||||||||| | Sbjct: 1954 cattcaggtaaggctgcaaaatccttcggcaatctgagtgatacgtgtttacccattcaa 1895 Query: 371 tctccgcaggggtcaacaaggcggtgtttataagtttagtctggtatggagcccatgtta 430 |||| ||||||| || ||| | || || || || || |||||||| ||||||||||||| Sbjct: 1894 tctcggcaggggccagcaaagtggcgtcaatcagctttgtctggtacggagcccatgtta 1835 Query: 431 tatgttcaaatgacaaataacccttctccccaaaattaaattttgtatcagcctctttga 490 |||||||||||| |||||||||||| || |||||||||||||| |||| || |||| | Sbjct: 1834 tatgttcaaatgccaaataacccttatctccaaaattaaatttagtattggcatcttgaa 1775 Query: 491 ctataaggacattctccaaccttataccaaagtttccatcttcgtagtaaccaggctcat 550 |||| || |||||||||||||||||||||||| ||||||||| ||||||||||| |||| Sbjct: 1774 ctatcagaacattctccaaccttataccaaagcttccatcttgatagtaaccaggttcat 1715 Query: 551 ctgttacagtcattgatgcttgcagtggtacatt 584 ||||||||||||| |||||||| ||||||||||| Sbjct: 1714 ctgttacagtcatcgatgcttgtagtggtacatt 1681
>dbj|AK105673.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A09, full insert sequence Length = 1721 Score = 246 bits (124), Expect = 7e-62 Identities = 268/316 (84%) Strand = Plus / Minus Query: 271 ataggttcagtggccttcctcagccattccttctcctgaacatttaggtaagactccaag 330 ||||| ||||| || ||||||||||||||||||||||| | || ||||| | | || Sbjct: 1365 ataggctcagtagctttcctcagccattccttctcctgctcgttcaggtatggttgcaga 1306 Query: 331 attttctggcagtcggagtggtacacgtttacccattcgatctccgcaggggtcaacaag 390 ||||| |||| || | ||| || ||||||||||||| ||||| || ||||||| ||| Sbjct: 1305 atttttcggcaatctgcgtgatatgcgtttacccattcaatctcggccggggtcagcaaa 1246 Query: 391 gcggtgtttataagtttagtctggtatggagcccatgttatatgttcaaatgacaaataa 450 | ||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1245 gtggtgtctatcagttttgtctggtatggagcccatgttatatgttcaaatgccaaataa 1186 Query: 451 cccttctccccaaaattaaattttgtatcagcctctttgactataaggacattctccaac 510 ||||| || || |||||| |||| |||| ||||||||| ||||| || ||||||||||| Sbjct: 1185 cccttatctccgaaattatatttagtattagcctctttaactatcagaacattctccaat 1126 Query: 511 cttataccaaagtttccatcttcgtagtaaccaggctcatctgttacagtcattgatgct 570 |||||||||||| |||||||||| ||||||||||| || |||||||||||||| |||||| Sbjct: 1125 cttataccaaagcttccatcttcatagtaaccaggttcgtctgttacagtcatcgatgct 1066 Query: 571 tgcagtggtacatttc 586 || ||||||| ||||| Sbjct: 1065 tgtagtggtatatttc 1050
>gb|AY106785.1| Zea mays PCO139190 mRNA sequence Length = 1536 Score = 212 bits (107), Expect = 1e-51 Identities = 260/311 (83%) Strand = Plus / Minus Query: 277 tcagtggccttcctcagccattccttctcctgaacatttaggtaagactccaagattttc 336 ||||| || ||| ||||||||| ||||||||| | || || | || ||||||||| ||| Sbjct: 1154 tcagtagctttcatcagccattgcttctcctgctcgttcagatgaggctccaagatcttc 1095 Query: 337 tggcagtcggagtggtacacgtttacccattcgatctccgcaggggtcaacaaggcggtg 396 ||||||| ||||||||| ||| ||||| |||||||| ||||||||| | ||||| Sbjct: 1094 cggcagtctgagtggtacgtgttcacccagtcgatctcaacaggggtcagaagcccggtg 1035 Query: 397 tttataagtttagtctggtatggagcccatgttatatgttcaaatgacaaataacccttc 456 | ||| || || |||||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 1034 tctatcagcttggtctggtatggagcccatgttatatgttcaaatgccaaataaccttta 975 Query: 457 tccccaaaattaaattttgtatcagcctctttgactataaggacattctccaaccttata 516 || ||||||||||| || | || || |||||| ||||| ||||||||||| |||||| Sbjct: 974 tctccaaaattaaacttagcattggcgtctttgcaaataagtacattctccaatcttata 915 Query: 517 ccaaagtttccatcttcgtagtaaccaggctcatctgttacagtcattgatgcttgcagt 576 |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct: 914 ccaaaggccccatcttcataataaccaggctcatctgtcacagtcattgatgcttgcagc 855 Query: 577 ggtacatttcg 587 ||||||||||| Sbjct: 854 ggtacatttcg 844
>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007D07, complete sequence Length = 133930 Score = 143 bits (72), Expect = 7e-31 Identities = 111/124 (89%) Strand = Plus / Plus Query: 422 cccatgttatatgttcaaatgacaaataacccttctccccaaaattaaattttgtatcag 481 ||||||||||||||||||||| |||||||||||| || || |||||| |||| |||| || Sbjct: 48346 cccatgttatatgttcaaatgccaaataacccttatctccgaaattatatttagtattag 48405 Query: 482 cctctttgactataaggacattctccaaccttataccaaagtttccatcttcgtagtaac 541 ||||||| ||||| || ||||||||||| |||||||||||| |||||||||| ||||||| Sbjct: 48406 cctctttaactatcagaacattctccaatcttataccaaagcttccatcttcatagtaac 48465 Query: 542 cagg 545 |||| Sbjct: 48466 cagg 48469 Score = 135 bits (68), Expect = 2e-28 Identities = 110/124 (88%) Strand = Plus / Plus Query: 422 cccatgttatatgttcaaatgacaaataacccttctccccaaaattaaattttgtatcag 481 ||||||||||||||||||||| |||||||||||| || |||||||||||||| |||| | Sbjct: 62456 cccatgttatatgttcaaatgccaaataacccttatctccaaaattaaatttagtattgg 62515 Query: 482 cctctttgactataaggacattctccaaccttataccaaagtttccatcttcgtagtaac 541 | |||| ||||| || |||||||||||||||||||||||| ||||||||| ||||||| Sbjct: 62516 catcttgaactatcagaacattctccaaccttataccaaagcttccatcttgatagtaac 62575 Query: 542 cagg 545 |||| Sbjct: 62576 cagg 62579 Score = 79.8 bits (40), Expect = 9e-12 Identities = 109/132 (82%) Strand = Plus / Plus Query: 251 tggcttaactgctcgcagttataggttcagtggccttcctcagccattccttctcctgaa 310 ||||||||| |||| |||| ||||| ||||| || ||||||||||||||||||||||| Sbjct: 61193 tggcttaacagctcacagtaataggctcagtagctttcctcagccattccttctcctgct 61252 Query: 311 catttaggtaagactccaagattttctggcagtcggagtggtacacgtttacccattcga 370 |||| ||||||| || ||| || | |||| || ||||| ||| |||||||||||| | Sbjct: 61253 cattcaggtaaggctgcaaaatccttcggcaatctgagtgatacgtgtttacccattcaa 61312 Query: 371 tctccgcagggg 382 |||| ||||||| Sbjct: 61313 tctcggcagggg 61324 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Plus Query: 271 ataggttcagtggccttcctcagccattccttctcctgaacatttaggtaagactccaag 330 ||||| ||||| || ||||||||||||||||||||||| | || ||||| | | || Sbjct: 47718 ataggctcagtagctttcctcagccattccttctcctgctcgttcaggtatggttgcaga 47777 Query: 331 attttctggcagtcggagtggtacacgtttacccattcgatctccgcaggggtcaacaag 390 ||||| |||| || | ||| || ||||||||||||| ||||| || ||||||| ||| Sbjct: 47778 atttttcggcaatctgcgtgatatgcgtttacccattcaatctcggccggggtcagcaaa 47837 Query: 391 gcggtgtttataagtttagtctggtatggagcc 423 | ||||| ||| ||||| ||||||||||||||| Sbjct: 47838 gtggtgtctatcagttttgtctggtatggagcc 47870 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 548 catctgttacagtcattgatgcttgcagtggtacatttc 586 |||||||||||||||| |||||||| ||||||||||||| Sbjct: 62730 catctgttacagtcatcgatgcttgtagtggtacatttc 62768 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 550 tctgttacagtcattgatgcttgcagtggtacatttc 586 |||||||||||||| |||||||| ||||||| ||||| Sbjct: 48593 tctgttacagtcatcgatgcttgtagtggtatatttc 48629
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 143 bits (72), Expect = 7e-31 Identities = 111/124 (89%) Strand = Plus / Plus Query: 422 cccatgttatatgttcaaatgacaaataacccttctccccaaaattaaattttgtatcag 481 ||||||||||||||||||||| |||||||||||| || || |||||| |||| |||| || Sbjct: 19045528 cccatgttatatgttcaaatgccaaataacccttatctccgaaattatatttagtattag 19045587 Query: 482 cctctttgactataaggacattctccaaccttataccaaagtttccatcttcgtagtaac 541 ||||||| ||||| || ||||||||||| |||||||||||| |||||||||| ||||||| Sbjct: 19045588 cctctttaactatcagaacattctccaatcttataccaaagcttccatcttcatagtaac 19045647 Query: 542 cagg 545 |||| Sbjct: 19045648 cagg 19045651 Score = 135 bits (68), Expect = 2e-28 Identities = 110/124 (88%) Strand = Plus / Plus Query: 422 cccatgttatatgttcaaatgacaaataacccttctccccaaaattaaattttgtatcag 481 ||||||||||||||||||||| |||||||||||| || |||||||||||||| |||| | Sbjct: 19059638 cccatgttatatgttcaaatgccaaataacccttatctccaaaattaaatttagtattgg 19059697 Query: 482 cctctttgactataaggacattctccaaccttataccaaagtttccatcttcgtagtaac 541 | |||| ||||| || |||||||||||||||||||||||| ||||||||| ||||||| Sbjct: 19059698 catcttgaactatcagaacattctccaaccttataccaaagcttccatcttgatagtaac 19059757 Query: 542 cagg 545 |||| Sbjct: 19059758 cagg 19059761 Score = 79.8 bits (40), Expect = 9e-12 Identities = 109/132 (82%) Strand = Plus / Plus Query: 251 tggcttaactgctcgcagttataggttcagtggccttcctcagccattccttctcctgaa 310 ||||||||| |||| |||| ||||| ||||| || ||||||||||||||||||||||| Sbjct: 19058375 tggcttaacagctcacagtaataggctcagtagctttcctcagccattccttctcctgct 19058434 Query: 311 catttaggtaagactccaagattttctggcagtcggagtggtacacgtttacccattcga 370 |||| ||||||| || ||| || | |||| || ||||| ||| |||||||||||| | Sbjct: 19058435 cattcaggtaaggctgcaaaatccttcggcaatctgagtgatacgtgtttacccattcaa 19058494 Query: 371 tctccgcagggg 382 |||| ||||||| Sbjct: 19058495 tctcggcagggg 19058506 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Plus Query: 271 ataggttcagtggccttcctcagccattccttctcctgaacatttaggtaagactccaag 330 ||||| ||||| || ||||||||||||||||||||||| | || ||||| | | || Sbjct: 19044900 ataggctcagtagctttcctcagccattccttctcctgctcgttcaggtatggttgcaga 19044959 Query: 331 attttctggcagtcggagtggtacacgtttacccattcgatctccgcaggggtcaacaag 390 ||||| |||| || | ||| || ||||||||||||| ||||| || ||||||| ||| Sbjct: 19044960 atttttcggcaatctgcgtgatatgcgtttacccattcaatctcggccggggtcagcaaa 19045019 Query: 391 gcggtgtttataagtttagtctggtatggagcc 423 | ||||| ||| ||||| ||||||||||||||| Sbjct: 19045020 gtggtgtctatcagttttgtctggtatggagcc 19045052 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 548 catctgttacagtcattgatgcttgcagtggtacatttc 586 |||||||||||||||| |||||||| ||||||||||||| Sbjct: 19059912 catctgttacagtcatcgatgcttgtagtggtacatttc 19059950 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 550 tctgttacagtcattgatgcttgcagtggtacatttc 586 |||||||||||||| |||||||| ||||||| ||||| Sbjct: 19045775 tctgttacagtcatcgatgcttgtagtggtatatttc 19045811 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaaataattttaatttcctc 31 |||||||||||||||||||| Sbjct: 3329272 aaaataattttaatttcctc 3329291
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 143 bits (72), Expect = 7e-31 Identities = 111/124 (89%) Strand = Plus / Plus Query: 422 cccatgttatatgttcaaatgacaaataacccttctccccaaaattaaattttgtatcag 481 ||||||||||||||||||||| |||||||||||| || || |||||| |||| |||| || Sbjct: 19204177 cccatgttatatgttcaaatgccaaataacccttatctccgaaattatatttagtattag 19204236 Query: 482 cctctttgactataaggacattctccaaccttataccaaagtttccatcttcgtagtaac 541 ||||||| ||||| || ||||||||||| |||||||||||| |||||||||| ||||||| Sbjct: 19204237 cctctttaactatcagaacattctccaatcttataccaaagcttccatcttcatagtaac 19204296 Query: 542 cagg 545 |||| Sbjct: 19204297 cagg 19204300 Score = 135 bits (68), Expect = 2e-28 Identities = 110/124 (88%) Strand = Plus / Plus Query: 422 cccatgttatatgttcaaatgacaaataacccttctccccaaaattaaattttgtatcag 481 ||||||||||||||||||||| |||||||||||| || |||||||||||||| |||| | Sbjct: 19218287 cccatgttatatgttcaaatgccaaataacccttatctccaaaattaaatttagtattgg 19218346 Query: 482 cctctttgactataaggacattctccaaccttataccaaagtttccatcttcgtagtaac 541 | |||| ||||| || |||||||||||||||||||||||| ||||||||| ||||||| Sbjct: 19218347 catcttgaactatcagaacattctccaaccttataccaaagcttccatcttgatagtaac 19218406 Query: 542 cagg 545 |||| Sbjct: 19218407 cagg 19218410 Score = 79.8 bits (40), Expect = 9e-12 Identities = 109/132 (82%) Strand = Plus / Plus Query: 251 tggcttaactgctcgcagttataggttcagtggccttcctcagccattccttctcctgaa 310 ||||||||| |||| |||| ||||| ||||| || ||||||||||||||||||||||| Sbjct: 19217024 tggcttaacagctcacagtaataggctcagtagctttcctcagccattccttctcctgct 19217083 Query: 311 catttaggtaagactccaagattttctggcagtcggagtggtacacgtttacccattcga 370 |||| ||||||| || ||| || | |||| || ||||| ||| |||||||||||| | Sbjct: 19217084 cattcaggtaaggctgcaaaatccttcggcaatctgagtgatacgtgtttacccattcaa 19217143 Query: 371 tctccgcagggg 382 |||| ||||||| Sbjct: 19217144 tctcggcagggg 19217155 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Plus Query: 271 ataggttcagtggccttcctcagccattccttctcctgaacatttaggtaagactccaag 330 ||||| ||||| || ||||||||||||||||||||||| | || ||||| | | || Sbjct: 19203549 ataggctcagtagctttcctcagccattccttctcctgctcgttcaggtatggttgcaga 19203608 Query: 331 attttctggcagtcggagtggtacacgtttacccattcgatctccgcaggggtcaacaag 390 ||||| |||| || | ||| || ||||||||||||| ||||| || ||||||| ||| Sbjct: 19203609 atttttcggcaatctgcgtgatatgcgtttacccattcaatctcggccggggtcagcaaa 19203668 Query: 391 gcggtgtttataagtttagtctggtatggagcc 423 | ||||| ||| ||||| ||||||||||||||| Sbjct: 19203669 gtggtgtctatcagttttgtctggtatggagcc 19203701 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 548 catctgttacagtcattgatgcttgcagtggtacatttc 586 |||||||||||||||| |||||||| ||||||||||||| Sbjct: 19218561 catctgttacagtcatcgatgcttgtagtggtacatttc 19218599 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 550 tctgttacagtcattgatgcttgcagtggtacatttc 586 |||||||||||||| |||||||| ||||||| ||||| Sbjct: 19204424 tctgttacagtcatcgatgcttgtagtggtatatttc 19204460 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaaataattttaatttcctc 31 |||||||||||||||||||| Sbjct: 3337977 aaaataattttaatttcctc 3337996
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 135 bits (68), Expect = 2e-28 Identities = 110/124 (88%) Strand = Plus / Plus Query: 422 cccatgttatatgttcaaatgacaaataacccttctccccaaaattaaattttgtatcag 481 ||||||||||||||||||| | |||||||||||| || |||||||||||||| |||| | Sbjct: 27036419 cccatgttatatgttcaaaagccaaataacccttatctccaaaattaaatttagtattgg 27036478 Query: 482 cctctttgactataaggacattctccaaccttataccaaagtttccatcttcgtagtaac 541 | ||||| ||||| || |||||||||||||||||||||||| |||| ||||| ||||||| Sbjct: 27036479 cttctttaactatcagaacattctccaaccttataccaaagcttccgtcttcatagtaac 27036538 Query: 542 cagg 545 |||| Sbjct: 27036539 cagg 27036542 Score = 101 bits (51), Expect = 3e-18 Identities = 141/171 (82%) Strand = Plus / Plus Query: 251 tggcttaactgctcgcagttataggttcagtggccttcctcagccattccttctcctgaa 310 ||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 27035973 tggcttaacagctcgcagcgataggttcagtagctttcctcagccattccttctcctgct 27036032 Query: 311 catttaggtaagactccaagattttctggcagtcggagtggtacacgtttacccattcga 370 |||| ||||||| | ||| ||||| ||| || ||||| ||| | ||||||||||| | Sbjct: 27036033 cattcaggtaaggttgcaaaatttttctgcaatccgagtgatacgcatttacccattcaa 27036092 Query: 371 tctccgcaggggtcaacaaggcggtgtttataagtttagtctggtatggag 421 |||| |||||||| | |||| ||||| ||| ||||| |||||||| |||| Sbjct: 27036093 tctcagcaggggtaagtaaggtggtgtctatcagttttgtctggtacggag 27036143 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 548 catctgttacagtcattgatgcttgcagtggtacatttc 586 |||||||||||||||| |||||||| ||||||||||||| Sbjct: 27036695 catctgttacagtcatcgatgcttgtagtggtacatttc 27036733
>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04 Length = 165270 Score = 135 bits (68), Expect = 2e-28 Identities = 110/124 (88%) Strand = Plus / Plus Query: 422 cccatgttatatgttcaaatgacaaataacccttctccccaaaattaaattttgtatcag 481 ||||||||||||||||||| | |||||||||||| || |||||||||||||| |||| | Sbjct: 160180 cccatgttatatgttcaaaagccaaataacccttatctccaaaattaaatttagtattgg 160239 Query: 482 cctctttgactataaggacattctccaaccttataccaaagtttccatcttcgtagtaac 541 | ||||| ||||| || |||||||||||||||||||||||| |||| ||||| ||||||| Sbjct: 160240 cttctttaactatcagaacattctccaaccttataccaaagcttccgtcttcatagtaac 160299 Query: 542 cagg 545 |||| Sbjct: 160300 cagg 160303 Score = 101 bits (51), Expect = 3e-18 Identities = 141/171 (82%) Strand = Plus / Plus Query: 251 tggcttaactgctcgcagttataggttcagtggccttcctcagccattccttctcctgaa 310 ||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 159734 tggcttaacagctcgcagcgataggttcagtagctttcctcagccattccttctcctgct 159793 Query: 311 catttaggtaagactccaagattttctggcagtcggagtggtacacgtttacccattcga 370 |||| ||||||| | ||| ||||| ||| || ||||| ||| | ||||||||||| | Sbjct: 159794 cattcaggtaaggttgcaaaatttttctgcaatccgagtgatacgcatttacccattcaa 159853 Query: 371 tctccgcaggggtcaacaaggcggtgtttataagtttagtctggtatggag 421 |||| |||||||| | |||| ||||| ||| ||||| |||||||| |||| Sbjct: 159854 tctcagcaggggtaagtaaggtggtgtctatcagttttgtctggtacggag 159904 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 548 catctgttacagtcattgatgcttgcagtggtacatttc 586 |||||||||||||||| |||||||| ||||||||||||| Sbjct: 160456 catctgttacagtcatcgatgcttgtagtggtacatttc 160494
>dbj|AP003628.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0473H04 Length = 155204 Score = 135 bits (68), Expect = 2e-28 Identities = 110/124 (88%) Strand = Plus / Plus Query: 422 cccatgttatatgttcaaatgacaaataacccttctccccaaaattaaattttgtatcag 481 ||||||||||||||||||| | |||||||||||| || |||||||||||||| |||| | Sbjct: 5229 cccatgttatatgttcaaaagccaaataacccttatctccaaaattaaatttagtattgg 5288 Query: 482 cctctttgactataaggacattctccaaccttataccaaagtttccatcttcgtagtaac 541 | ||||| ||||| || |||||||||||||||||||||||| |||| ||||| ||||||| Sbjct: 5289 cttctttaactatcagaacattctccaaccttataccaaagcttccgtcttcatagtaac 5348 Query: 542 cagg 545 |||| Sbjct: 5349 cagg 5352 Score = 101 bits (51), Expect = 3e-18 Identities = 141/171 (82%) Strand = Plus / Plus Query: 251 tggcttaactgctcgcagttataggttcagtggccttcctcagccattccttctcctgaa 310 ||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct: 4783 tggcttaacagctcgcagcgataggttcagtagctttcctcagccattccttctcctgct 4842 Query: 311 catttaggtaagactccaagattttctggcagtcggagtggtacacgtttacccattcga 370 |||| ||||||| | ||| ||||| ||| || ||||| ||| | ||||||||||| | Sbjct: 4843 cattcaggtaaggttgcaaaatttttctgcaatccgagtgatacgcatttacccattcaa 4902 Query: 371 tctccgcaggggtcaacaaggcggtgtttataagtttagtctggtatggag 421 |||| |||||||| | |||| ||||| ||| ||||| |||||||| |||| Sbjct: 4903 tctcagcaggggtaagtaaggtggtgtctatcagttttgtctggtacggag 4953 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 548 catctgttacagtcattgatgcttgcagtggtacatttc 586 |||||||||||||||| |||||||| ||||||||||||| Sbjct: 5505 catctgttacagtcatcgatgcttgtagtggtacatttc 5543
>gb|BT013814.1| Lycopersicon esculentum clone 132735R, mRNA sequence Length = 2166 Score = 133 bits (67), Expect = 7e-28 Identities = 148/175 (84%) Strand = Plus / Minus Query: 410 tctggtatggagcccatgttatatgttcaaatgacaaataacccttctccccaaaattaa 469 |||| ||||| ||||| |||||||| ||||||| ||| |||||||| || ||||| || | Sbjct: 1893 tctgatatggtgcccaagttatatgctcaaatgtcaagtaacccttgtcgccaaagttga 1834 Query: 470 attttgtatcagcctctttgactataaggacattctccaaccttataccaaagtttccat 529 | || |||| |||||||||| ||||| ||||||||||| ||||||||||| ||||||| Sbjct: 1833 acttagtattgccctctttgacaataagcacattctccaatcttataccaaactttccat 1774 Query: 530 cttcgtagtaaccaggctcatctgttacagtcattgatgcttgcagtggtacatt 584 | |||||||||||||| |||||||| || |||||||| |||| ||||| ||||| Sbjct: 1773 cctcgtagtaaccaggttcatctgtgactgtcattgaaacttgtagtggcacatt 1719
>emb|AJ310676.1|LES310676 Lycopersicon esculentum mRNA for Xaa-Pro aminopeptidase 2 (app2 gene) Length = 2138 Score = 133 bits (67), Expect = 7e-28 Identities = 148/175 (84%) Strand = Plus / Minus Query: 410 tctggtatggagcccatgttatatgttcaaatgacaaataacccttctccccaaaattaa 469 |||| ||||| ||||| |||||||| ||||||| ||| |||||||| || ||||| || | Sbjct: 1816 tctgatatggtgcccaagttatatgctcaaatgtcaagtaacccttgtcgccaaagttga 1757 Query: 470 attttgtatcagcctctttgactataaggacattctccaaccttataccaaagtttccat 529 | || |||| |||||||||| ||||| ||||||||||| ||||||||||| ||||||| Sbjct: 1756 acttagtattgccctctttgacaataagcacattctccaatcttataccaaactttccat 1697 Query: 530 cttcgtagtaaccaggctcatctgttacagtcattgatgcttgcagtggtacatt 584 | |||||||||||||| |||||||| || |||||||| |||| ||||| ||||| Sbjct: 1696 cctcgtagtaaccaggttcatctgtgactgtcattgaaacttgtagtggcacatt 1642
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 113 bits (57), Expect = 7e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 422 cccatgttatatgttcaaatgacaaataacccttctccccaaaattaaattttgtatcag 481 ||||||||||||||||||||| |||||||||||| || || |||||| |||| |||| || Sbjct: 148726 cccatgttatatgttcaaatgccaaataacccttatctccgaaattatatttagtattag 148785 Query: 482 cctctttgactataaggacattctccaaccttataccaaag 522 ||||||| ||||| || ||||||||||| |||||||||||| Sbjct: 148786 cctctttaactatcagaacattctccaatcttataccaaag 148826 Score = 65.9 bits (33), Expect = 1e-07 Identities = 123/153 (80%) Strand = Plus / Plus Query: 271 ataggttcagtggccttcctcagccattccttctcctgaacatttaggtaagactccaag 330 ||||| ||||| || ||||||||||||||||||||||| | || ||||| | | || Sbjct: 148098 ataggctcagtagctttcctcagccattccttctcctgctcgttcaggtatggttgcaga 148157 Query: 331 attttctggcagtcggagtggtacacgtttacccattcgatctccgcaggggtcaacaag 390 ||||| |||| || | ||| || ||||||||||||| ||||| || ||||||| ||| Sbjct: 148158 atttttcggcaatctgcgtgatatgcgtttacccattcaatctcggccggggtcagcaaa 148217 Query: 391 gcggtgtttataagtttagtctggtatggagcc 423 | ||||| ||| ||||| ||||||||||||||| Sbjct: 148218 gtggtgtctatcagttttgtctggtatggagcc 148250
>ref|NM_119840.2| Arabidopsis thaliana ATAPP1 AT4G36760 (ATAPP1) transcript variant AT4G36760.1 mRNA, complete cds Length = 2212 Score = 99.6 bits (50), Expect = 1e-17 Identities = 113/134 (84%) Strand = Plus / Minus Query: 451 cccttctccccaaaattaaattttgtatcagcctctttgactataaggacattctccaac 510 ||||| || |||||||| |||| || ||||| || ||||| | ||| |||||||||||| Sbjct: 1787 cccttgtcgccaaaattgaattcagtctcagcgtcattgacaacaagaacattctccaac 1728 Query: 511 cttataccaaagtttccatcttcgtagtaaccaggctcatctgttacagtcattgatgct 570 || ||||||||||| || ||||| ||||||||||| ||||||||||||||||| | ||| Sbjct: 1727 ctaataccaaagttcccgtcttcatagtaaccaggttcatctgttacagtcatggtagct 1668 Query: 571 tgcagtggtacatt 584 || || |||||||| Sbjct: 1667 tgaagaggtacatt 1654
>ref|NM_202967.1| Arabidopsis thaliana ATAPP1 AT4G36760 (ATAPP1) transcript variant AT4G36760.2 mRNA, complete cds Length = 2227 Score = 99.6 bits (50), Expect = 1e-17 Identities = 113/134 (84%) Strand = Plus / Minus Query: 451 cccttctccccaaaattaaattttgtatcagcctctttgactataaggacattctccaac 510 ||||| || |||||||| |||| || ||||| || ||||| | ||| |||||||||||| Sbjct: 1802 cccttgtcgccaaaattgaattcagtctcagcgtcattgacaacaagaacattctccaac 1743 Query: 511 cttataccaaagtttccatcttcgtagtaaccaggctcatctgttacagtcattgatgct 570 || ||||||||||| || ||||| ||||||||||| ||||||||||||||||| | ||| Sbjct: 1742 ctaataccaaagttcccgtcttcatagtaaccaggttcatctgttacagtcatggtagct 1683 Query: 571 tgcagtggtacatt 584 || || |||||||| Sbjct: 1682 tgaagaggtacatt 1669
>gb|AY552784.1| Arabidopsis thaliana aminopeptidase P short isoform mRNA, complete cds Length = 2078 Score = 99.6 bits (50), Expect = 1e-17 Identities = 113/134 (84%) Strand = Plus / Minus Query: 451 cccttctccccaaaattaaattttgtatcagcctctttgactataaggacattctccaac 510 ||||| || |||||||| |||| || ||||| || ||||| | ||| |||||||||||| Sbjct: 1706 cccttgtcgccaaaattgaattcagtctcagcgtcattgacaacaagaacattctccaac 1647 Query: 511 cttataccaaagtttccatcttcgtagtaaccaggctcatctgttacagtcattgatgct 570 || ||||||||||| || ||||| ||||||||||| ||||||||||||||||| | ||| Sbjct: 1646 ctaataccaaagttcccgtcttcatagtaaccaggttcatctgttacagtcatggtagct 1587 Query: 571 tgcagtggtacatt 584 || || |||||||| Sbjct: 1586 tgaagaggtacatt 1573
>gb|AF360249.1| Arabidopsis thaliana At4g36760 mRNA sequence Length = 2168 Score = 99.6 bits (50), Expect = 1e-17 Identities = 113/134 (84%) Strand = Plus / Minus Query: 451 cccttctccccaaaattaaattttgtatcagcctctttgactataaggacattctccaac 510 ||||| || |||||||| |||| || ||||| || ||||| | ||| |||||||||||| Sbjct: 1783 cccttgtcgccaaaattgaattcagtctcagcgtcattgacaacaagaacattctccaac 1724 Query: 511 cttataccaaagtttccatcttcgtagtaaccaggctcatctgttacagtcattgatgct 570 || ||||||||||| || ||||| ||||||||||| ||||||||||||||||| | ||| Sbjct: 1723 ctaataccaaagttcccgtcttcatagtaaccaggttcatctgttacagtcatggtagct 1664 Query: 571 tgcagtggtacatt 584 || || |||||||| Sbjct: 1663 tgaagaggtacatt 1650
>emb|BX827450.1|CNS0A2CM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS57ZB12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2162 Score = 99.6 bits (50), Expect = 1e-17 Identities = 113/134 (84%) Strand = Plus / Minus Query: 451 cccttctccccaaaattaaattttgtatcagcctctttgactataaggacattctccaac 510 ||||| || |||||||| |||| || ||||| || ||||| | ||| |||||||||||| Sbjct: 1793 cccttgtcgccaaaattgaattcagtctcagcgtcattgacaacaagaacattctccaac 1734 Query: 511 cttataccaaagtttccatcttcgtagtaaccaggctcatctgttacagtcattgatgct 570 || ||||||||||| || ||||| ||||||||||| ||||||||||||||||| | ||| Sbjct: 1733 ctaataccaaagttcccgtcttcatagtaaccaggttcatctgttacagtcatggtagct 1674 Query: 571 tgcagtggtacatt 584 || || |||||||| Sbjct: 1673 tgaagaggtacatt 1660
>gb|AY143575.1| Arabidopsis thaliana aminopeptidase P mRNA, complete cds Length = 2140 Score = 99.6 bits (50), Expect = 1e-17 Identities = 113/134 (84%) Strand = Plus / Minus Query: 451 cccttctccccaaaattaaattttgtatcagcctctttgactataaggacattctccaac 510 ||||| || |||||||| |||| || ||||| || ||||| | ||| |||||||||||| Sbjct: 1763 cccttgtcgccaaaattgaattcagtctcagcgtcattgacaacaagaacattctccaac 1704 Query: 511 cttataccaaagtttccatcttcgtagtaaccaggctcatctgttacagtcattgatgct 570 || ||||||||||| || ||||| ||||||||||| ||||||||||||||||| | ||| Sbjct: 1703 ctaataccaaagttcccgtcttcatagtaaccaggttcatctgttacagtcatggtagct 1644 Query: 571 tgcagtggtacatt 584 || || |||||||| Sbjct: 1643 tgaagaggtacatt 1630
>emb|AJ308541.1|LES308541 Lycopersicon esculentum mRNA for Xaa-Pro aminopeptidase 1 (app1 gene) Length = 2198 Score = 81.8 bits (41), Expect = 2e-12 Identities = 128/157 (81%) Strand = Plus / Minus Query: 410 tctggtatggagcccatgttatatgttcaaatgacaaataacccttctccccaaaattaa 469 |||||||||| ||||| |||||||| |||||||| || || ||||| | || || || | Sbjct: 1885 tctggtatggtgcccaagttatatgctcaaatgataagtagcccttattgccgaagttga 1826 Query: 470 attttgtatcagcctctttgactataaggacattctccaaccttataccaaagtttccat 529 | || |||| |||| ||||| ||||| |||||||| | |||||||||||||| || | Sbjct: 1825 acttcgtatggccctccttgacaataagaacattctctattcttataccaaagttcccgt 1766 Query: 530 cttcgtagtaaccaggctcatctgttacagtcattga 566 |||| || |||||||| ||||||||||||| |||||| Sbjct: 1765 cttcataataaccaggttcatctgttacagccattga 1729
>emb|CR962121.2| Medicago truncatula chromosome 5 clone mte1-77f5, COMPLETE SEQUENCE Length = 107392 Score = 79.8 bits (40), Expect = 9e-12 Identities = 97/116 (83%) Strand = Plus / Plus Query: 430 atatgttcaaatgacaaataacccttctccccaaaattaaattttgtatcagcctctttg 489 ||||| ||||| || || ||||| || || |||||||||||||||||||||||||| ||| Sbjct: 41178 atatgctcaaacgataagtaacctttatcgccaaaattaaattttgtatcagcctcgttg 41237 Query: 490 actataaggacattctccaaccttataccaaagtttccatcttcgtagtaaccagg 545 | | ||| ||||||||||| ||||| ||||| |||||| || ||||||||||| Sbjct: 41238 ataacaagcacattctccaatcttatcccaaatgctccatcctcatagtaaccagg 41293 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 550 tctgttacagtcattgatgcttgcagtggtacatttcg 587 |||||||||||||| || ||||||| |||||||||||| Sbjct: 41479 tctgttacagtcatggaagcttgcaatggtacatttcg 41516
>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2 Length = 198354 Score = 69.9 bits (35), Expect = 9e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 451 cccttctccccaaaattaaattttgtatcagcctctttgactataaggacattctccaac 510 ||||| || |||||||| |||| || ||||| || ||||| | ||| |||||||||||| Sbjct: 39720 cccttgtcgccaaaattgaattcagtctcagcgtcattgacaacaagaacattctccaac 39779 Query: 511 cttataccaaagtttccatcttcgtagtaaccagg 545 || ||||||||||| || ||||| ||||||||||| Sbjct: 39780 ctaataccaaagttcccgtcttcatagtaaccagg 39814
>emb|AL161590.2|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86 Length = 198780 Score = 69.9 bits (35), Expect = 9e-09 Identities = 80/95 (84%) Strand = Plus / Minus Query: 451 cccttctccccaaaattaaattttgtatcagcctctttgactataaggacattctccaac 510 ||||| || |||||||| |||| || ||||| || ||||| | ||| |||||||||||| Sbjct: 17258 cccttgtcgccaaaattgaattcagtctcagcgtcattgacaacaagaacattctccaac 17199 Query: 511 cttataccaaagtttccatcttcgtagtaaccagg 545 || ||||||||||| || ||||| ||||||||||| Sbjct: 17198 ctaataccaaagttcccgtcttcatagtaaccagg 17164
>ref|XM_780021.1| PREDICTED: Strongylocentrotus purpuratus similar to X-prolyl aminopeptidase (aminopeptidase P) 1, soluble (LOC579932), mRNA Length = 564 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 525 tccatcttcgtagtaaccaggctc 548 |||||||||||||||||||||||| Sbjct: 321 tccatcttcgtagtaaccaggctc 298
>ref|XM_789599.1| PREDICTED: Strongylocentrotus purpuratus similar to X-prolyl aminopeptidase (aminopeptidase P) 1, soluble (LOC589972), mRNA Length = 2451 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 525 tccatcttcgtagtaaccaggctcatc 551 |||||| |||||||||||||||||||| Sbjct: 2109 tccatcctcgtagtaaccaggctcatc 2083
>ref|XM_686620.1| PREDICTED: Danio rerio similar to Lon protease homolog, mitochondrial precursor (Lon protease-like protein) (LONP) (LONHs) (LOC563257), mRNA Length = 2274 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 cccgcctcacgctaggcagca 134 ||||||||||||||||||||| Sbjct: 86 cccgcctcacgctaggcagca 106
>ref|XM_467971.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1023 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gcagtcggagtggtacacgt 358 |||||||||||||||||||| Sbjct: 675 gcagtcggagtggtacacgt 656
>ref|NM_191440.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1665 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ctattgcaaaaataatttta 23 |||||||||||||||||||| Sbjct: 1334 ctattgcaaaaataatttta 1353
>gb|AC158579.7| Mus musculus chromosome 7, clone RP24-180F12, complete sequence Length = 179049 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 ataaggacattctccaacct 512 |||||||||||||||||||| Sbjct: 169553 ataaggacattctccaacct 169572
>gb|AE000660.1|HUAE000660 Homo sapiens T-cell receptor alpha delta locus from bases 501613 to 752736 (section 3 of 5) of the Complete Nucleotide Sequence Length = 251124 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 aataattttaatttcctcccctct 37 |||||||||| ||||||||||||| Sbjct: 83847 aataattttattttcctcccctct 83824
>gb|AC004227.1| Homo sapiens chromosome 5, P1 clone 356a8 (LBNL H32), complete sequence Length = 72941 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tgcaaaaataattttaattt 27 |||||||||||||||||||| Sbjct: 26774 tgcaaaaataattttaattt 26793
>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence Length = 161073 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 aaaataattttaatttcctc 31 |||||||||||||||||||| Sbjct: 85022 aaaataattttaatttcctc 85003
>gb|AC149604.1| Mus musculus BAC clone RP23-472I3 from chromosome 15, complete sequence Length = 177501 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ctcagccattccttctcctg 308 |||||||||||||||||||| Sbjct: 44207 ctcagccattccttctcctg 44188
>gb|AC158947.4| Mus musculus chromosome 7, clone RP23-230A4, complete sequence Length = 191195 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 ataaggacattctccaacct 512 |||||||||||||||||||| Sbjct: 42195 ataaggacattctccaacct 42176
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gcagtcggagtggtacacgt 358 |||||||||||||||||||| Sbjct: 29902583 gcagtcggagtggtacacgt 29902564
>emb|CR538722.1| M.truncatula DNA sequence from clone MTH2-11A20 on chromosome 3, complete sequence Length = 118829 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 caacaaggcggtgtttataa 403 |||||||||||||||||||| Sbjct: 27388 caacaaggcggtgtttataa 27369
>gb|AY386371.1| Yaba monkey tumor virus, complete genome Length = 134721 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 caaaaataattttaatttcc 29 |||||||||||||||||||| Sbjct: 53940 caaaaataattttaatttcc 53959
>gb|AC144508.3| Mus musculus BAC clone RP24-152C23 from chromosome 15, complete sequence Length = 155524 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 aaaataattttaatttcctc 31 |||||||||||||||||||| Sbjct: 101593 aaaataattttaatttcctc 101574
>gb|AC126256.4| Mus musculus BAC clone RP24-235B15 from chromosome 7, complete sequence Length = 188677 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 ccttcctcagccattccttctcct 307 |||||||| ||||||||||||||| Sbjct: 4888 ccttcctctgccattccttctcct 4911
>gb|AC117223.3| Mus musculus BAC clone RP23-348B1 from chromosome 2, complete sequence Length = 183972 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 ggcagcacgaaatacataaa 147 |||||||||||||||||||| Sbjct: 54043 ggcagcacgaaatacataaa 54062
>ref|XM_652180.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (3.t00011) partial mRNA Length = 696 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 ttctcctgaacatttaggta 320 |||||||||||||||||||| Sbjct: 327 ttctcctgaacatttaggta 346
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete sequence Length = 159661 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 gcagtcggagtggtacacgt 358 |||||||||||||||||||| Sbjct: 108023 gcagtcggagtggtacacgt 108042
>gb|AC155806.3| Mus musculus BAC clone RP24-308M10 from chromosome 7, complete sequence Length = 202336 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 ccttcctcagccattccttctcct 307 |||||||| ||||||||||||||| Sbjct: 160173 ccttcctctgccattccttctcct 160196
>emb|AL136371.8| Human DNA sequence from clone RP11-110P20 on chromosome 1q31.1 Contains STSs, GSSs and a CpG island, complete sequence Length = 147784 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tattgcaaaaataattttaa 24 |||||||||||||||||||| Sbjct: 49662 tattgcaaaaataattttaa 49643
>emb|AL050336.14|HSJ447E21 Human DNA sequence from clone RP3-447E21 on chromosome 6p12.1-21.1 Contains the 5' end of the CLIC5 gene for chloride intracellular channel 5, a novel pseudogene and a CpG island, complete sequence Length = 123520 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 gcaaaaataattttaatttc 28 |||||||||||||||||||| Sbjct: 99327 gcaaaaataattttaatttc 99308
>emb|Y19212.1|HSDNAK6HF Homo sapiens K6hf gene for hair keratin, exons 1 to 9 Length = 17400 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 aaaaataattttaatttcct 30 |||||||||||||||||||| Sbjct: 11193 aaaaataattttaatttcct 11212
>gb|AC026341.17| Homo sapiens 3 BAC RP11-416B23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156392 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 gcaaaaataattttaatttc 28 |||||||||||||||||||| Sbjct: 104375 gcaaaaataattttaatttc 104394
>dbj|AK134246.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched library, clone:5930401C08 product:carnitine palmitoyltransferase 1c, full insert sequence Length = 3260 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 ccttcctcagccattccttctcct 307 |||||||| ||||||||||||||| Sbjct: 2921 ccttcctctgccattccttctcct 2898
>gb|AC092067.2| Homo sapiens chromosome 19 clone CTB-184G21, complete sequence Length = 61958 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 ggctcatctgttacagtcat 563 |||||||||||||||||||| Sbjct: 25843 ggctcatctgttacagtcat 25824
>gb|AC110187.11| Mus musculus chromosome 7, clone RP24-541E23, complete sequence Length = 181046 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 ataaggacattctccaacct 512 |||||||||||||||||||| Sbjct: 158513 ataaggacattctccaacct 158532
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 aggcggtgtttataagttta 408 |||||||||||||||||||| Sbjct: 4255913 aggcggtgtttataagttta 4255932
>gb|AC017109.5| Homo sapiens chromosome 4 clone RP11-568O24, complete sequence Length = 195169 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 aaaattaaattttgtatcag 481 |||||||||||||||||||| Sbjct: 120947 aaaattaaattttgtatcag 120966
>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete sequence Length = 139946 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gcagtcggagtggtacacgt 358 |||||||||||||||||||| Sbjct: 68524 gcagtcggagtggtacacgt 68505
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gcagtcggagtggtacacgt 358 |||||||||||||||||||| Sbjct: 29994005 gcagtcggagtggtacacgt 29993986
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gcagtcggagtggtacacgt 358 |||||||||||||||||||| Sbjct: 32343641 gcagtcggagtggtacacgt 32343622
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ctattgcaaaaataatttta 23 |||||||||||||||||||| Sbjct: 32670850 ctattgcaaaaataatttta 32670831
>gb|AC010133.4|AC010133 Homo sapiens clone RP11-118E9, complete sequence Length = 152074 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 caaatgacaaataacccttctccc 460 |||||||||||||||| ||||||| Sbjct: 41031 caaatgacaaataacctttctccc 41008
>gb|AC007884.5|AC007884 Drosophila melanogaster, chromosome 2R, region 60F-60F, BAC clone BACR08I14, complete sequence Length = 190616 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tgcaaaaataattttaattt 27 |||||||||||||||||||| Sbjct: 126364 tgcaaaaataattttaattt 126345
>emb|AL772181.23| Mouse DNA sequence from clone RP23-118H3 on chromosome 2, complete sequence Length = 219704 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 ggcagcacgaaatacataaa 147 |||||||||||||||||||| Sbjct: 54039 ggcagcacgaaatacataaa 54058
>gb|AC055736.20|AC055736 Homo sapiens 12 BAC RP11-1020M18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 150902 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 aaaaataattttaatttcct 30 |||||||||||||||||||| Sbjct: 135671 aaaaataattttaatttcct 135690
>gb|AC011555.5|AC011555 Homo sapiens chromosome 19 clone LLNLR-280G7, complete sequence Length = 42546 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 ggctcatctgttacagtcat 563 |||||||||||||||||||| Sbjct: 15592 ggctcatctgttacagtcat 15573
>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695H10 Length = 136883 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ctattgcaaaaataatttta 23 |||||||||||||||||||| Sbjct: 133645 ctattgcaaaaataatttta 133626
>dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0490D09 Length = 154430 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ctattgcaaaaataatttta 23 |||||||||||||||||||| Sbjct: 33645 ctattgcaaaaataatttta 33626
>gb|AC020940.6| Homo sapiens chromosome 5 clone CTD-2311E21, complete sequence Length = 112922 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 tggagcccatgttatatgtt 436 |||||||||||||||||||| Sbjct: 71443 tggagcccatgttatatgtt 71462
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 attacagttgattaaatatt 197 |||||||||||||||||||| Sbjct: 1151244 attacagttgattaaatatt 1151263
>gb|AC116769.11| Mus musculus chromosome 15, clone RP23-415L16, complete sequence Length = 201535 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 tcatctgttacagtcattga 566 |||||||||||||||||||| Sbjct: 152142 tcatctgttacagtcattga 152161
>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A11 Length = 132352 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gcagtcggagtggtacacgt 358 |||||||||||||||||||| Sbjct: 119473 gcagtcggagtggtacacgt 119454
>dbj|AP004125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1767_D02 Length = 139145 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gcagtcggagtggtacacgt 358 |||||||||||||||||||| Sbjct: 5154 gcagtcggagtggtacacgt 5135
>dbj|AK120199.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037C01, full insert sequence Length = 2703 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ctattgcaaaaataatttta 23 |||||||||||||||||||| Sbjct: 1923 ctattgcaaaaataatttta 1942
>dbj|AP004351.1| Polypterus ornatipinnis mitochondrial DNA, complete genome Length = 16621 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 aataattttaatttcctccc 33 |||||||||||||||||||| Sbjct: 9586 aataattttaatttcctccc 9605
>dbj|AK069524.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024G06, full insert sequence Length = 2900 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ctattgcaaaaataatttta 23 |||||||||||||||||||| Sbjct: 2720 ctattgcaaaaataatttta 2739
>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome Length = 1884661 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 461 caaaattaaattttgtatcagcctcttt 488 ||||| |||||||||| ||||||||||| Sbjct: 921788 caaaagtaaattttgtctcagcctcttt 921815
>gb|AE003465.3| Drosophila melanogaster chromosome 2R, section 72 of 73 of the complete sequence Length = 343833 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tgcaaaaataattttaattt 27 |||||||||||||||||||| Sbjct: 278668 tgcaaaaataattttaattt 278649
>gb|U62532.1|POU62532 Polypterus ornatipinnis complete mitochondrial genome Length = 16624 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 aataattttaatttcctccc 33 |||||||||||||||||||| Sbjct: 9588 aataattttaatttcctccc 9607
>gb|U00089.2| Mycoplasma pneumoniae M129, complete genome Length = 816394 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tgctattgcaaaaataattt 21 |||||||||||||||||||| Sbjct: 659759 tgctattgcaaaaataattt 659778
>emb|CR391944.10| Zebrafish DNA sequence from clone CH211-95K19 in linkage group 3, complete sequence Length = 172806 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaaataattttaatttcctc 31 |||||||||||||||||||| Sbjct: 72429 aaaataattttaatttcctc 72448
>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome 14 Length = 1071646 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 aataattttaatttcctcccctct 37 |||||||||| ||||||||||||| Sbjct: 585459 aataattttattttcctcccctct 585436
>emb|AL807773.7| Mouse DNA sequence from clone RP23-228L24 on chromosome X, complete sequence Length = 186645 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 415 tatggagcccatgttatatgttca 438 ||||||||||||||| |||||||| Sbjct: 160134 tatggagcccatgttttatgttca 160157
>gb|M59428.1|TETRPL37 T.thermophila ribosomal protein L37 (L37) mRNA, complete cds Length = 2961 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tgctattgcaaaaataattt 21 |||||||||||||||||||| Sbjct: 703 tgctattgcaaaaataattt 722 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,193,164 Number of Sequences: 3902068 Number of extensions: 6193164 Number of successful extensions: 130439 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 129826 Number of HSP's gapped (non-prelim): 604 length of query: 587 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 564 effective length of database: 17,143,297,704 effective search space: 9668819905056 effective search space used: 9668819905056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)