ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC ... 133 4e-31
2RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC ... 132 9e-31
3RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC ... 125 1e-28
4PPSA_METJA (Q57962) Probable phosphoenolpyruvate synthase (EC 2.... 30 7.8

>RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 669

 Score =  133 bits (335), Expect = 4e-31
 Identities = 64/78 (82%), Positives = 68/78 (87%)
 Frame = -3

Query: 631 NFTNPGVVSHNEILEMYRDYIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPEL 452
           NFTNPGVVSHNEILEMYRDYI+P F W NF LEEQAKVIVAPRSNNE+D  KLK EFPEL
Sbjct: 592 NFTNPGVVSHNEILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPEL 651

Query: 451 LSIKESLIKNVFKPNQKT 398
           LSIKESLIK  + PN+KT
Sbjct: 652 LSIKESLIKYAYGPNKKT 669



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>RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 664

 Score =  132 bits (332), Expect = 9e-31
 Identities = 61/78 (78%), Positives = 70/78 (89%)
 Frame = -3

Query: 631 NFTNPGVVSHNEILEMYRDYIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPEL 452
           NFTNPGVVSHNEILEMY+ YI+P+F W NFNLEEQAKVIVAPRSNNE+D  KL  EFPE+
Sbjct: 587 NFTNPGVVSHNEILEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEM 646

Query: 451 LSIKESLIKNVFKPNQKT 398
           LSIK+SLIK VF+PN++T
Sbjct: 647 LSIKDSLIKYVFEPNKRT 664



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>RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC 4.2.1.-) (EC|
           1.1.1.-) (RHAMNOSE BIOSYNTHESIS 2 protein) (NDP-rhamnose
           synthase) (MUCILAGE-MODIFIED4 protein) (UDP-L-rhamnose
           synthase MUM4)
          Length = 667

 Score =  125 bits (314), Expect = 1e-28
 Identities = 58/78 (74%), Positives = 68/78 (87%)
 Frame = -3

Query: 631 NFTNPGVVSHNEILEMYRDYIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPEL 452
           NFTNPGVVSHNEILEMY++YI+P F W NF +EEQAKVIVA RSNNE+D  KL  EFPE+
Sbjct: 590 NFTNPGVVSHNEILEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEM 649

Query: 451 LSIKESLIKNVFKPNQKT 398
           LSIKESL+K VF+PN++T
Sbjct: 650 LSIKESLLKYVFEPNKRT 667



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>PPSA_METJA (Q57962) Probable phosphoenolpyruvate synthase (EC 2.7.9.2)|
            (Pyruvate, water dikinase) (PEP synthase) [Contains: Mja
            pep intein (Mja pepA intein)]
          Length = 1188

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 577  DYIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPELLSIKESLIKNVFKPNQKT 398
            D+I    ++ +    +  +  +A   NNEL +   K + P +L + E +IK   K   KT
Sbjct: 1071 DFIKEGINFVSLGTNDLTQYTIAIDRNNELVSKYYKEDHPAVLKLVEHVIKTCKKHGIKT 1130

Query: 397  S 395
            S
Sbjct: 1131 S 1131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,618,109
Number of Sequences: 219361
Number of extensions: 2086677
Number of successful extensions: 4746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4746
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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