ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK070838.1| Oryza sativa (japonica cultivar-group) cDNA clon... 383 e-103
2gb|BT018666.1| Zea mays clone EL01N0510C04.d mRNA sequence 303 3e-79
3gb|AY104376.1| Zea mays PCO082841 mRNA sequence 303 3e-79
4dbj|AK104688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 3e-42
5dbj|AK068760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 3e-42
6dbj|AK067567.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 3e-42
7ref|NM_188595.1| Oryza sativa (japonica cultivar-group), predic... 157 5e-35
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
9dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
10dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
11gb|BT017334.1| Zea mays clone EL01N0321B01.c mRNA sequence 113 6e-22
12gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome... 78 4e-11
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
14gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 44 0.50
15gb|AC154597.2| Mus musculus BAC clone RP23-355G2 from chromosome... 42 2.0
16gb|AC118607.12| Mus musculus chromosome 14, clone RP23-479D1, co... 42 2.0
17gb|AC108430.11| Mus musculus chromosome 14, clone RP23-166L19, c... 42 2.0
18emb|Z69380.1|SPAC4H3 S.pombe chromosome I cosmid c4H3 42 2.0
19emb|AL049543.17|HS1186N24 Human DNA sequence from clone RP5-1186... 42 2.0
20gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7... 42 2.0
21gb|AC161764.4| Mus musculus BAC clone RP23-193D1 from chromosome... 42 2.0
22gb|AY441319.1| Armigeres subalbatus ASAP ID: 40791 questionable:... 40 7.8
23gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 7.8
24gb|AC186170.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 7.8
25gb|DQ481669.1| Takifugu rubripes HoxDb gene cluster, complete se... 40 7.8
26gb|AC146272.3| Pan troglodytes BAC clone RP43-29H6 from 7, compl... 40 7.8
27gb|AC116478.14| Mus musculus chromosome 8, clone RP23-396E23, co... 40 7.8
28gb|AC132597.3| Mus musculus BAC clone RP24-180D17 from chromosom... 40 7.8
29gb|AC142352.1| Pan troglodytes BAC clone RP43-21K18 from 7, comp... 40 7.8
30gb|AC156993.3| Mus musculus chromosome 8, clone RP23-79L16, comp... 40 7.8
31gb|AC159098.6| Mus musculus chromosome 8, clone RP24-391C9, comp... 40 7.8
32gb|AC116363.2| Homo sapiens chromosome 5 clone RP11-758E17, comp... 40 7.8
33gb|AC092288.3| Homo sapiens chromosome 5 clone CTD-2293K3, compl... 40 7.8
34gb|AC109494.3| Homo sapiens chromosome 5 clone RP11-783J1, compl... 40 7.8
35gb|AC087069.3| Homo sapiens chromosome 7 clone RP11-7P19, comple... 40 7.8
36gb|AC113036.8| Mus musculus chromosome 13, clone RP23-223B10, co... 40 7.8 
>dbj|AK070838.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073J07, full
            insert sequence
          Length = 1877

 Score =  383 bits (193), Expect = e-103
 Identities = 346/397 (87%)
 Strand = Plus / Minus

                                                                        
Query: 175  taccatgctcagtcaagctgtaccttgtccaattcagcaatggtttcttcaaactttaaa 234
            ||||| |||||||||| |||||| || |||| |||| ||||  |||| ||||||||||||
Sbjct: 1605 taccaggctcagtcaaactgtactttctccagttcaccaatcatttcctcaaactttaaa 1546

                                                                        
Query: 235  atctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgacatgaata 294
            |||||||| |||||||| || |||||||||||| | |  |||||||||| ||||||||||
Sbjct: 1545 atctgtctcaaaaagtaatcaccatggcgcttgattggtttggactccatgacatgaata 1486

                                                                        
Query: 295  acatcctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtca 354
            |||||||| ||||| ||||||||||||||||| ||||| ||||| || |||||| |||||
Sbjct: 1485 acatcctccttaatgtagaaatcaaagtctgcgctggaaacaatctttccattattgtca 1426

                                                                        
Query: 355  actgcatgcattttgtgcttgtacgtcataagaatagacctaagtgttgcctcatccatt 414
            ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| |
Sbjct: 1425 actgcatgcattttgtgcttgtacgtcatcaggatagacctaagcgttgcctcatccact 1366

                                                                        
Query: 415  tccatatactgggcaagtttggtaatggtaattgctgagtataactttagatagctccgg 474
            |||||||| || |||||||||| ||| || |||| ||| || || ||||||||||| | |
Sbjct: 1365 tccatatattgcgcaagtttggcaatagttattgttgaatacaattttagatagcttctg 1306

                                                                        
Query: 475  ataccagaaaggagctgttgctgcttcacttcataaaggaacagcttcaactgaagccga 534
            || || ||||| | |||||| |||||||||||||||||||||| |||||| ||||| || 
Sbjct: 1305 atccctgaaagcaactgttgttgcttcacttcataaaggaacaacttcaattgaaggcgg 1246

                                                 
Query: 535  taggcgtcctggttataatttgtaagtggctggtcca 571
            || || |||||||||||||||||||||||||| ||||
Sbjct: 1245 tatgcatcctggttataatttgtaagtggctgatcca 1209
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>gb|BT018666.1| Zea mays clone EL01N0510C04.d mRNA sequence
          Length = 1646

 Score =  303 bits (153), Expect = 3e-79
 Identities = 330/389 (84%)
 Strand = Plus / Minus

                                                                        
Query: 183  tcagtcaagctgtaccttgtccaattcagcaatggtttcttcaaactttaaaatctgtct 242
            |||||||||||||||||| |||| |||| ||||  |||| |||||||| ||||| |||||
Sbjct: 1575 tcagtcaagctgtaccttctccagttcaccaatcatttcctcaaacttcaaaatttgtct 1516

                                                                        
Query: 243  taaaaagtagtccccatggcgcttggtcgacttggactccacgacatgaataacatcctc 302
             |||||||| || ||||| |||||||| |  ||||||||||| |||||||| ||||||||
Sbjct: 1515 caaaaagtaatcaccatgacgcttggtaggtttggactccacaacatgaatcacatcctc 1456

                                                                        
Query: 303  attaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactgcatg 362
                || ||||| |||||||||||||| ||||| || || || | |||||||||||||||
Sbjct: 1455 gacgatgtagaagtcaaagtctgcacttgatactatctttccttcactgtcaactgcatg 1396

                                                                        
Query: 363  cattttgtgcttgtacgtcataagaatagacctaagtgttgcctcatccatttccatata 422
            ||||||||||||||| ||||| || || ||||| |||||||| ||||||| |||||||||
Sbjct: 1395 cattttgtgcttgtatgtcatcaggatcgaccttagtgttgcttcatccacttccatata 1336

                                                                        
Query: 423  ctgggcaagtttggtaatggtaattgctgagtataactttagatagctccggataccaga 482
             |||||||||||| ||||||| |||| ||| |||| ||| ||||| ||||| || |||||
Sbjct: 1335 ttgggcaagtttgctaatggttattgttgaatatagcttcagataactccgaatcccaga 1276

                                                                        
Query: 483  aaggagctgttgctgcttcacttcataaaggaacagcttcaactgaagccgataggcgtc 542
            ||| | |||||||||||| |||||||| || |||| |||||||||||| || || || ||
Sbjct: 1275 aagcaactgttgctgctttacttcatagagaaacaacttcaactgaagacggtatgcatc 1216

                                         
Query: 543  ctggttataatttgtaagtggctggtcca 571
            ||||||||| ||||| || ||||||||||
Sbjct: 1215 ctggttatagtttgttagcggctggtcca 1187
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>gb|AY104376.1| Zea mays PCO082841 mRNA sequence
          Length = 1869

 Score =  303 bits (153), Expect = 3e-79
 Identities = 330/389 (84%)
 Strand = Plus / Minus

                                                                        
Query: 183  tcagtcaagctgtaccttgtccaattcagcaatggtttcttcaaactttaaaatctgtct 242
            |||||||||||||||||| |||| |||| ||||  |||| |||||||| ||||| |||||
Sbjct: 1665 tcagtcaagctgtaccttctccagttcaccaatcatttcctcaaacttcaaaatttgtct 1606

                                                                        
Query: 243  taaaaagtagtccccatggcgcttggtcgacttggactccacgacatgaataacatcctc 302
             |||||||| || ||||| |||||||| |  ||||||||||| |||||||| ||||||||
Sbjct: 1605 caaaaagtaatcaccatgacgcttggtaggtttggactccacaacatgaatcacatcctc 1546

                                                                        
Query: 303  attaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactgcatg 362
                || ||||| |||||||||||||| ||||| || || || | |||||||||||||||
Sbjct: 1545 gacgatgtagaagtcaaagtctgcacttgatactatctttccttcactgtcaactgcatg 1486

                                                                        
Query: 363  cattttgtgcttgtacgtcataagaatagacctaagtgttgcctcatccatttccatata 422
            ||||||||||||||| ||||| || || ||||| |||||||| ||||||| |||||||||
Sbjct: 1485 cattttgtgcttgtatgtcatcaggatcgaccttagtgttgcttcatccacttccatata 1426

                                                                        
Query: 423  ctgggcaagtttggtaatggtaattgctgagtataactttagatagctccggataccaga 482
             |||||||||||| ||||||| |||| ||| |||| ||| ||||| ||||| || |||||
Sbjct: 1425 ttgggcaagtttgctaatggttattgttgaatatagcttcagataactccgaatcccaga 1366

                                                                        
Query: 483  aaggagctgttgctgcttcacttcataaaggaacagcttcaactgaagccgataggcgtc 542
            ||| | |||||||||||| |||||||| || |||| |||||||||||| || || || ||
Sbjct: 1365 aagcaactgttgctgctttacttcatagagaaacaacttcaactgaagacggtatgcatc 1306

                                         
Query: 543  ctggttataatttgtaagtggctggtcca 571
            ||||||||| ||||| || ||||||||||
Sbjct: 1305 ctggttatagtttgttagcggctggtcca 1277
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>dbj|AK104688.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-F08, full
           insert sequence
          Length = 1242

 Score =  180 bits (91), Expect = 3e-42
 Identities = 274/335 (81%)
 Strand = Plus / Minus

                                                                       
Query: 223 tcaaactttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactcc 282
           |||||||| ||||||||||| |||||||| || ||||||  ||||||  ||||||| || 
Sbjct: 985 tcaaacttcaaaatctgtctcaaaaagtaatcaccatggttcttggttaacttggattca 926

                                                                       
Query: 283 acgacatgaataacatcctcattaatatagaaatcaaagtctgcactggatacaattttc 342
           || ||||||||||  ||||||| ||||||||| |||||||||||||||||||  |  || 
Sbjct: 925 acaacatgaataatgtcctcatcaatatagaagtcaaagtctgcactggatatgaccttt 866

                                                                       
Query: 343 ccattactgtcaactgcatgcattttgtgcttgtacgtcataagaatagacctaagtgtt 402
           || | |||||| | || |||||||||||||||||| ||||||||||| | ||| ||||| 
Sbjct: 865 ccgtcactgtcgattgaatgcattttgtgcttgtatgtcataagaattgtccttagtgta 806

                                                                       
Query: 403 gcctcatccatttccatatactgggcaagtttggtaatggtaattgctgagtataacttt 462
            |||||||||  ||||| || | |||||||||   ||| || || | ||| || ||||| 
Sbjct: 805 acctcatccacatccatgtatttggcaagtttaccaattgttatcgttgaatacaacttg 746

                                                                       
Query: 463 agatagctccggataccagaaaggagctgttgctgcttcacttcataaaggaacagcttc 522
           |||||||| || |||||||| || | |||||| || |||||||||||||| || || |||
Sbjct: 745 agatagcttcgaataccagagagcaactgttgttgtttcacttcataaagaaatagtttc 686

                                              
Query: 523 aactgaagccgataggcgtcctggttataatttgt 557
           |||||||| ||||| || |||||||| || |||||
Sbjct: 685 aactgaagacgataagcatcctggttgtagtttgt 651
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>dbj|AK068760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160I02, full
            insert sequence
          Length = 1948

 Score =  180 bits (91), Expect = 3e-42
 Identities = 274/335 (81%)
 Strand = Plus / Minus

                                                                        
Query: 223  tcaaactttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactcc 282
            |||||||| ||||||||||| |||||||| || ||||||  ||||||  ||||||| || 
Sbjct: 1553 tcaaacttcaaaatctgtctcaaaaagtaatcaccatggttcttggttaacttggattca 1494

                                                                        
Query: 283  acgacatgaataacatcctcattaatatagaaatcaaagtctgcactggatacaattttc 342
            || ||||||||||  ||||||| ||||||||| |||||||||||||||||||  |  || 
Sbjct: 1493 acaacatgaataatgtcctcatcaatatagaagtcaaagtctgcactggatatgaccttt 1434

                                                                        
Query: 343  ccattactgtcaactgcatgcattttgtgcttgtacgtcataagaatagacctaagtgtt 402
            || | |||||| | || |||||||||||||||||| ||||||||||| | ||| ||||| 
Sbjct: 1433 ccgtcactgtcgattgaatgcattttgtgcttgtatgtcataagaattgtccttagtgta 1374

                                                                        
Query: 403  gcctcatccatttccatatactgggcaagtttggtaatggtaattgctgagtataacttt 462
             |||||||||  ||||| || | |||||||||   ||| || || | ||| || ||||| 
Sbjct: 1373 acctcatccacatccatgtatttggcaagtttaccaattgttatcgttgaatacaacttg 1314

                                                                        
Query: 463  agatagctccggataccagaaaggagctgttgctgcttcacttcataaaggaacagcttc 522
            |||||||| || |||||||| || | |||||| || |||||||||||||| || || |||
Sbjct: 1313 agatagcttcgaataccagagagcaactgttgttgtttcacttcataaagaaatagtttc 1254

                                               
Query: 523  aactgaagccgataggcgtcctggttataatttgt 557
            |||||||| ||||| || |||||||| || |||||
Sbjct: 1253 aactgaagacgataagcatcctggttgtagtttgt 1219
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>dbj|AK067567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108C14, full
            insert sequence
          Length = 1950

 Score =  180 bits (91), Expect = 3e-42
 Identities = 274/335 (81%)
 Strand = Plus / Minus

                                                                        
Query: 223  tcaaactttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactcc 282
            |||||||| ||||||||||| |||||||| || ||||||  ||||||  ||||||| || 
Sbjct: 1598 tcaaacttcaaaatctgtctcaaaaagtaatcaccatggttcttggttaacttggattca 1539

                                                                        
Query: 283  acgacatgaataacatcctcattaatatagaaatcaaagtctgcactggatacaattttc 342
            || ||||||||||  ||||||| ||||||||| |||||||||||||||||||  |  || 
Sbjct: 1538 acaacatgaataatgtcctcatcaatatagaagtcaaagtctgcactggatatgaccttt 1479

                                                                        
Query: 343  ccattactgtcaactgcatgcattttgtgcttgtacgtcataagaatagacctaagtgtt 402
            || | |||||| | || |||||||||||||||||| ||||||||||| | ||| ||||| 
Sbjct: 1478 ccgtcactgtcgattgaatgcattttgtgcttgtatgtcataagaattgtccttagtgta 1419

                                                                        
Query: 403  gcctcatccatttccatatactgggcaagtttggtaatggtaattgctgagtataacttt 462
             |||||||||  ||||| || | |||||||||   ||| || || | ||| || ||||| 
Sbjct: 1418 acctcatccacatccatgtatttggcaagtttaccaattgttatcgttgaatacaacttg 1359

                                                                        
Query: 463  agatagctccggataccagaaaggagctgttgctgcttcacttcataaaggaacagcttc 522
            |||||||| || |||||||| || | |||||| || |||||||||||||| || || |||
Sbjct: 1358 agatagcttcgaataccagagagcaactgttgttgtttcacttcataaagaaatagtttc 1299

                                               
Query: 523  aactgaagccgataggcgtcctggttataatttgt 557
            |||||||| ||||| || |||||||| || |||||
Sbjct: 1298 aactgaagacgataagcatcctggttgtagtttgt 1264
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>ref|NM_188595.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1698

 Score =  157 bits (79), Expect = 5e-35
 Identities = 154/179 (86%)
 Strand = Plus / Minus

                                                                        
Query: 393  cctaagtgttgcctcatccatttccatatactgggcaagtttggtaatggtaattgctga 452
            |||||| ||||||||||||| ||||||||| || |||||||||| ||| || |||| |||
Sbjct: 1356 cctaagcgttgcctcatccacttccatatattgcgcaagtttggcaatagttattgttga 1297

                                                                        
Query: 453  gtataactttagatagctccggataccagaaaggagctgttgctgcttcacttcataaag 512
             || || ||||||||||| | ||| || ||||| | |||||| |||||||||||||||||
Sbjct: 1296 atacaattttagatagcttctgatccctgaaagcaactgttgttgcttcacttcataaag 1237

                                                                       
Query: 513  gaacagcttcaactgaagccgataggcgtcctggttataatttgtaagtggctggtcca 571
            ||||| |||||| ||||| || || || |||||||||||||||||||||||||| ||||
Sbjct: 1236 gaacaacttcaattgaaggcggtatgcatcctggttataatttgtaagtggctgatcca 1178



 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Minus

                                                                        
Query: 304  ttaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactgcatgc 363
            ||||| ||||||||||||||||| ||||| ||||| || |||||| ||||||||||||||
Sbjct: 1478 ttaatgtagaaatcaaagtctgcgctggaaacaatctttccattattgtcaactgcatgc 1419

                                            
Query: 364  attttgtgcttgtacgtcataagaatagacct 395
            |||||||||||||||||||| || ||||||||
Sbjct: 1418 attttgtgcttgtacgtcatcaggatagacct 1387
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  121 bits (61), Expect = 3e-24
 Identities = 121/141 (85%)
 Strand = Plus / Plus

                                                                           
Query: 390     agacctaagtgttgcctcatccatttccatatactgggcaagtttggtaatggtaattgc 449
               ||||||||| ||||||||||||| ||||||||| || |||||||||| ||| || |||| 
Sbjct: 7125420 agacctaagcgttgcctcatccacttccatatattgcgcaagtttggcaatagttattgt 7125479

                                                                           
Query: 450     tgagtataactttagatagctccggataccagaaaggagctgttgctgcttcacttcata 509
               ||| || || ||||||||||| | ||| || ||||| | |||||| ||||||||||||||
Sbjct: 7125480 tgaatacaattttagatagcttctgatccctgaaagcaactgttgttgcttcacttcata 7125539

                                    
Query: 510     aaggaacagcttcaactgaag 530
               |||||||| |||||| |||||
Sbjct: 7125540 aaggaacaacttcaattgaag 7125560



 Score =  121 bits (61), Expect = 3e-24
 Identities = 88/97 (90%)
 Strand = Plus / Plus

                                                                           
Query: 299     cctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactg 358
               |||| ||||| ||||||||||||||||| ||||| ||||| || |||||| |||||||||
Sbjct: 7125256 cctccttaatgtagaaatcaaagtctgcgctggaaacaatctttccattattgtcaactg 7125315

                                                    
Query: 359     catgcattttgtgcttgtacgtcataagaatagacct 395
               ||||||||||||||||||||||||| || ||||||||
Sbjct: 7125316 catgcattttgtgcttgtacgtcatcaggatagacct 7125352



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                           
Query: 228     ctttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgac 287
               ||||||||||||||| |||||||| || |||||||||||| | |  |||||||||| |||
Sbjct: 7124854 ctttaaaatctgtctcaaaaagtaatcaccatggcgcttgattggtttggactccatgac 7124913

                             
Query: 288     atgaataacatcct 301
               ||||||||||||||
Sbjct: 7124914 atgaataacatcct 7124927



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 542     cctggttataatttgtaagtggctggtcca 571
               ||||||||||||||||||||||||| ||||
Sbjct: 7126125 cctggttataatttgtaagtggctgatcca 7126154
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>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485D09
          Length = 150594

 Score =  121 bits (61), Expect = 3e-24
 Identities = 121/141 (85%)
 Strand = Plus / Plus

                                                                         
Query: 390   agacctaagtgttgcctcatccatttccatatactgggcaagtttggtaatggtaattgc 449
             ||||||||| ||||||||||||| ||||||||| || |||||||||| ||| || |||| 
Sbjct: 20068 agacctaagcgttgcctcatccacttccatatattgcgcaagtttggcaatagttattgt 20127

                                                                         
Query: 450   tgagtataactttagatagctccggataccagaaaggagctgttgctgcttcacttcata 509
             ||| || || ||||||||||| | ||| || ||||| | |||||| ||||||||||||||
Sbjct: 20128 tgaatacaattttagatagcttctgatccctgaaagcaactgttgttgcttcacttcata 20187

                                  
Query: 510   aaggaacagcttcaactgaag 530
             |||||||| |||||| |||||
Sbjct: 20188 aaggaacaacttcaattgaag 20208



 Score =  121 bits (61), Expect = 3e-24
 Identities = 88/97 (90%)
 Strand = Plus / Plus

                                                                         
Query: 299   cctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactg 358
             |||| ||||| ||||||||||||||||| ||||| ||||| || |||||| |||||||||
Sbjct: 19904 cctccttaatgtagaaatcaaagtctgcgctggaaacaatctttccattattgtcaactg 19963

                                                  
Query: 359   catgcattttgtgcttgtacgtcataagaatagacct 395
             ||||||||||||||||||||||||| || ||||||||
Sbjct: 19964 catgcattttgtgcttgtacgtcatcaggatagacct 20000



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                         
Query: 228   ctttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgac 287
             ||||||||||||||| |||||||| || |||||||||||| | |  |||||||||| |||
Sbjct: 19502 ctttaaaatctgtctcaaaaagtaatcaccatggcgcttgattggtttggactccatgac 19561

                           
Query: 288   atgaataacatcct 301
             ||||||||||||||
Sbjct: 19562 atgaataacatcct 19575



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 542   cctggttataatttgtaagtggctggtcca 571
             ||||||||||||||||||||||||| ||||
Sbjct: 20773 cctggttataatttgtaagtggctgatcca 20802
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>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0452F10
          Length = 145120

 Score =  121 bits (61), Expect = 3e-24
 Identities = 121/141 (85%)
 Strand = Plus / Plus

                                                                          
Query: 390    agacctaagtgttgcctcatccatttccatatactgggcaagtttggtaatggtaattgc 449
              ||||||||| ||||||||||||| ||||||||| || |||||||||| ||| || |||| 
Sbjct: 113000 agacctaagcgttgcctcatccacttccatatattgcgcaagtttggcaatagttattgt 113059

                                                                          
Query: 450    tgagtataactttagatagctccggataccagaaaggagctgttgctgcttcacttcata 509
              ||| || || ||||||||||| | ||| || ||||| | |||||| ||||||||||||||
Sbjct: 113060 tgaatacaattttagatagcttctgatccctgaaagcaactgttgttgcttcacttcata 113119

                                   
Query: 510    aaggaacagcttcaactgaag 530
              |||||||| |||||| |||||
Sbjct: 113120 aaggaacaacttcaattgaag 113140



 Score =  121 bits (61), Expect = 3e-24
 Identities = 88/97 (90%)
 Strand = Plus / Plus

                                                                          
Query: 299    cctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactg 358
              |||| ||||| ||||||||||||||||| ||||| ||||| || |||||| |||||||||
Sbjct: 112836 cctccttaatgtagaaatcaaagtctgcgctggaaacaatctttccattattgtcaactg 112895

                                                   
Query: 359    catgcattttgtgcttgtacgtcataagaatagacct 395
              ||||||||||||||||||||||||| || ||||||||
Sbjct: 112896 catgcattttgtgcttgtacgtcatcaggatagacct 112932



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                          
Query: 228    ctttaaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgac 287
              ||||||||||||||| |||||||| || |||||||||||| | |  |||||||||| |||
Sbjct: 112434 ctttaaaatctgtctcaaaaagtaatcaccatggcgcttgattggtttggactccatgac 112493

                            
Query: 288    atgaataacatcct 301
              ||||||||||||||
Sbjct: 112494 atgaataacatcct 112507



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                            
Query: 542    cctggttataatttgtaagtggctggtcca 571
              ||||||||||||||||||||||||| ||||
Sbjct: 113705 cctggttataatttgtaagtggctgatcca 113734
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>gb|BT017334.1| Zea mays clone EL01N0321B01.c mRNA sequence
          Length = 320

 Score =  113 bits (57), Expect = 6e-22
 Identities = 129/153 (84%)
 Strand = Plus / Minus

                                                                       
Query: 183 tcagtcaagctgtaccttgtccaattcagcaatggtttcttcaaactttaaaatctgtct 242
           |||||||||||||||||| |||| |||| ||||  |||| |||||||| ||||| |||||
Sbjct: 178 tcagtcaagctgtaccttctccagttcaccaatcatttcctcaaacttcaaaatttgtct 119

                                                                       
Query: 243 taaaaagtagtccccatggcgcttggtcgacttggactccacgacatgaataacatcctc 302
            |||||||| || ||||| |||||||| |  ||||||||||| |||||||| ||||||||
Sbjct: 118 caaaaagtaatcaccatgacgcttggtaggtttggactccacaacatgaatcacatcctc 59

                                            
Query: 303 attaatatagaaatcaaagtctgcactggatac 335
               || ||||| |||||||||||||| |||||
Sbjct: 58  gacgatgtagaagtcaaagtctgcacttgatac 26
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>gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_C10,
             complete sequence
          Length = 138209

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                         
Query: 299   cctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactg 358
             |||||| ||||||||| |||||||||||||||||||  |  || || | |||||| | ||
Sbjct: 99750 cctcatcaatatagaagtcaaagtctgcactggatatgacctttccgtcactgtcgattg 99809

                                            
Query: 359   catgcattttgtgcttgtacgtcataagaat 389
              |||||||||||||||||| |||||||||||
Sbjct: 99810 aatgcattttgtgcttgtatgtcataagaat 99840



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                          
Query: 457    aactttagatagctccggataccagaaaggagctgttgctgcttcacttcataaaggaac 516
              ||||| |||||||| || |||||||| || | |||||| || |||||||||||||| || 
Sbjct: 99991  aacttgagatagcttcgaataccagagagcaactgttgttgtttcacttcataaagaaat 100050

                                           
Query: 517    agcttcaactgaagccgataggcgtcctg 545
              || ||||||||||| ||||| || |||||
Sbjct: 100051 agtttcaactgaagacgataagcatcctg 100079



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                         
Query: 232   aaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgacatga 291
             ||||||||||| |||||||| || ||||||  ||||||  ||||||| || || ||||||
Sbjct: 98668 aaaatctgtctcaaaaagtaatcaccatggttcttggttaacttggattcaacaacatga 98727

                 
Query: 292   ataa 295
             ||||
Sbjct: 98728 ataa 98731
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                           
Query: 299     cctcattaatatagaaatcaaagtctgcactggatacaattttcccattactgtcaactg 358
               |||||| ||||||||| |||||||||||||||||||  |  || || | |||||| | ||
Sbjct: 7663355 cctcatcaatatagaagtcaaagtctgcactggatatgacctttccgtcactgtcgattg 7663414

                                              
Query: 359     catgcattttgtgcttgtacgtcataagaat 389
                |||||||||||||||||| |||||||||||
Sbjct: 7663415 aatgcattttgtgcttgtatgtcataagaat 7663445



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                           
Query: 457     aactttagatagctccggataccagaaaggagctgttgctgcttcacttcataaaggaac 516
               ||||| |||||||| || |||||||| || | |||||| || |||||||||||||| || 
Sbjct: 7663596 aacttgagatagcttcgaataccagagagcaactgttgttgtttcacttcataaagaaat 7663655

                                            
Query: 517     agcttcaactgaagccgataggcgtcctg 545
               || ||||||||||| ||||| || |||||
Sbjct: 7663656 agtttcaactgaagacgataagcatcctg 7663684



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                           
Query: 232     aaaatctgtcttaaaaagtagtccccatggcgcttggtcgacttggactccacgacatga 291
               ||||||||||| |||||||| || ||||||  ||||||  ||||||| || || ||||||
Sbjct: 7662273 aaaatctgtctcaaaaagtaatcaccatggttcttggttaacttggattcaacaacatga 7662332

                   
Query: 292     ataa 295
               ||||
Sbjct: 7662333 ataa 7662336
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 394     ctaagtgttgcctcatccattt 415
               ||||||||||||||||||||||
Sbjct: 2721786 ctaagtgttgcctcatccattt 2721765
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>gb|AC154597.2| Mus musculus BAC clone RP23-355G2 from chromosome 14, complete sequence
          Length = 201544

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 476   taccagaaaggagctgttgct 496
             |||||||||||||||||||||
Sbjct: 32349 taccagaaaggagctgttgct 32329
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>gb|AC118607.12| Mus musculus chromosome 14, clone RP23-479D1, complete sequence
          Length = 218552

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 515  acagcttcaactgaagccgat 535
            |||||||||||||||||||||
Sbjct: 1992 acagcttcaactgaagccgat 2012
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>gb|AC108430.11| Mus musculus chromosome 14, clone RP23-166L19, complete sequence
          Length = 204251

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 476  taccagaaaggagctgttgct 496
            |||||||||||||||||||||
Sbjct: 3214 taccagaaaggagctgttgct 3234
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>emb|Z69380.1|SPAC4H3 S.pombe chromosome I cosmid c4H3
          Length = 34635

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 406   tcatccatttccatatactgg 426
             |||||||||||||||||||||
Sbjct: 20711 tcatccatttccatatactgg 20691
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>emb|AL049543.17|HS1186N24 Human DNA sequence from clone RP5-1186N24 on chromosome 6p21.2-22.2.
             Contains part of a novel zinc finger protein gene, the
             GPX5 gene for glutathione peroxidase 5 (epididymal
             androgen-related protein), the 5' end of a glutathion
             peroxidase pseudogene, ESTs, STSs, GSSs and a CpG island,
             complete sequence
          Length = 95594

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 229   tttaaaatctgtcttaaaaagtagt 253
             |||||||| ||||||||||||||||
Sbjct: 87604 tttaaaatttgtcttaaaaagtagt 87580
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>gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7, complete sequence
          Length = 187543

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 229    tttaaaatctgtcttaaaaagtagt 253
              |||||||| ||||||||||||||||
Sbjct: 181707 tttaaaatttgtcttaaaaagtagt 181731
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>gb|AC161764.4| Mus musculus BAC clone RP23-193D1 from chromosome 14, complete sequence
          Length = 215230

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 515    acagcttcaactgaagccgat 535
              |||||||||||||||||||||
Sbjct: 158889 acagcttcaactgaagccgat 158909
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>gb|AY441319.1| Armigeres subalbatus ASAP ID: 40791 questionable: mitochondrial
           small ribosomal subunit S5 mRNA sequence
          Length = 540

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 485 ggagctgttgctgcttcact 504
           ||||||||||||||||||||
Sbjct: 514 ggagctgttgctgcttcact 495
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    tgtttctctcctcgatgatc 172
              ||||||||||||||||||||
Sbjct: 658599 tgtttctctcctcgatgatc 658580
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>gb|AC186170.1| Ornithorhynchus anatinus chromosome UNK clone OABb-12B13, complete
             sequence
          Length = 134720

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 422   actgggcaagtttggtaatggtaattgctgag 453
             |||||||| || |||||||||||| |||||||
Sbjct: 44537 actgggcaggtgtggtaatggtaactgctgag 44568
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>gb|DQ481669.1| Takifugu rubripes HoxDb gene cluster, complete sequence
          Length = 398525

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   tttcttcaaactttaaaatc 237
             ||||||||||||||||||||
Sbjct: 25363 tttcttcaaactttaaaatc 25344
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>gb|AC146272.3| Pan troglodytes BAC clone RP43-29H6 from 7, complete sequence
          Length = 149408

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 552    atttgtaagtggctggtcca 571
              ||||||||||||||||||||
Sbjct: 115667 atttgtaagtggctggtcca 115648
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>gb|AC116478.14| Mus musculus chromosome 8, clone RP23-396E23, complete sequence
          Length = 193468

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     caggataatacagtgaattg 35
              ||||||||||||||||||||
Sbjct: 144561 caggataatacagtgaattg 144542
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>gb|AC132597.3| Mus musculus BAC clone RP24-180D17 from chromosome 5, complete sequence
          Length = 162871

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   tgcatgcattttgtgcttgt 376
             ||||||||||||||||||||
Sbjct: 35874 tgcatgcattttgtgcttgt 35893
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>gb|AC142352.1| Pan troglodytes BAC clone RP43-21K18 from 7, complete sequence
          Length = 171165

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 552    atttgtaagtggctggtcca 571
              ||||||||||||||||||||
Sbjct: 138102 atttgtaagtggctggtcca 138083
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>gb|AC156993.3| Mus musculus chromosome 8, clone RP23-79L16, complete sequence
          Length = 145880

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    caggataatacagtgaattg 35
             ||||||||||||||||||||
Sbjct: 92854 caggataatacagtgaattg 92873
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>gb|AC159098.6| Mus musculus chromosome 8, clone RP24-391C9, complete sequence
          Length = 184137

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 16   caggataatacagtgaattg 35
            ||||||||||||||||||||
Sbjct: 1854 caggataatacagtgaattg 1873
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>gb|AC116363.2| Homo sapiens chromosome 5 clone RP11-758E17, complete sequence
          Length = 194619

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   ttcttcaaactttaaaatct 238
             ||||||||||||||||||||
Sbjct: 80314 ttcttcaaactttaaaatct 80295
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>gb|AC092288.3| Homo sapiens chromosome 5 clone CTD-2293K3, complete sequence
          Length = 93844

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   ttcttcaaactttaaaatct 238
             ||||||||||||||||||||
Sbjct: 16057 ttcttcaaactttaaaatct 16038
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>gb|AC109494.3| Homo sapiens chromosome 5 clone RP11-783J1, complete sequence
          Length = 172180

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   ttcttcaaactttaaaatct 238
             ||||||||||||||||||||
Sbjct: 39966 ttcttcaaactttaaaatct 39985
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>gb|AC087069.3| Homo sapiens chromosome 7 clone RP11-7P19, complete sequence
          Length = 159620

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 552    atttgtaagtggctggtcca 571
              ||||||||||||||||||||
Sbjct: 116334 atttgtaagtggctggtcca 116315
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>gb|AC113036.8| Mus musculus chromosome 13, clone RP23-223B10, complete sequence
          Length = 190133

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   tttaaaatctgtcttaaaaa 248
             ||||||||||||||||||||
Sbjct: 61231 tttaaaatctgtcttaaaaa 61212


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,937,198
Number of Sequences: 3902068
Number of extensions: 4937198
Number of successful extensions: 104679
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104472
Number of HSP's gapped (non-prelim): 196
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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