ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags22g24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC022268.1| Homo sapiens acyl-Coenzyme A oxidase-like, mRNA (... 42 0.96
2gb|AC122913.4| Mus musculus BAC clone RP23-25J21 from 3, complet... 40 3.8
3gb|AC132315.4| Mus musculus BAC clone RP24-234J3 from chromosome... 40 3.8
4gb|AY593791.1| Foot-and-mouth disease virus A isolate airan iso1... 40 3.8
5emb|AL845479.8| Mouse DNA sequence from clone RP23-232N20 on chr... 40 3.8

>gb|BC022268.1| Homo sapiens acyl-Coenzyme A oxidase-like, mRNA (cDNA clone
           IMAGE:4730078), partial cds
          Length = 2214

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 150 cgcacttcactcctgtggcca 170
           |||||||||||||||||||||
Sbjct: 326 cgcacttcactcctgtggcca 306



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>gb|AC122913.4| Mus musculus BAC clone RP23-25J21 from 3, complete sequence
          Length = 205216

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    atctgtgctgccccctttca 284
              ||||||||||||||||||||
Sbjct: 143487 atctgtgctgccccctttca 143506



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>gb|AC132315.4| Mus musculus BAC clone RP24-234J3 from chromosome 12, complete sequence
          Length = 181828

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    caacaaaaagtacagacttc 143
              ||||||||||||||||||||
Sbjct: 130807 caacaaaaagtacagacttc 130788



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>gb|AY593791.1| Foot-and-mouth disease virus A isolate airan iso105, complete genome
          Length = 8280

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  cttcactcctgtggccaatt 173
            ||||||||||||||||||||
Sbjct: 4164 cttcactcctgtggccaatt 4145



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>emb|AL845479.8| Mouse DNA sequence from clone RP23-232N20 on chromosome 2, complete
             sequence
          Length = 102283

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   aacaaaaagtacagacttca 144
             ||||||||||||||||||||
Sbjct: 61510 aacaaaaagtacagacttca 61529


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,234,212
Number of Sequences: 3902068
Number of extensions: 2234212
Number of successful extensions: 59593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59586
Number of HSP's gapped (non-prelim): 7
length of query: 289
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 267
effective length of database: 17,147,199,772
effective search space: 4578302339124
effective search space used: 4578302339124
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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