ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22g17 |
|---|---|
| Clone Library Name | barley_pub |
>RL5A_ORYSA (P49625) 60S ribosomal protein L5-1| Length = 304 Score = 121 bits (304), Expect(2) = 4e-51 Identities = 61/79 (77%), Positives = 67/79 (84%) Frame = -3 Query: 479 PRSTKLTSSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYE 300 P + SEY+KKGI AD MEA+YKKVHAAIRADP+MAKSTK P THKRYN KKLTYE Sbjct: 216 PEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYE 275 Query: 299 ERKASLVERLNALNNSAGA 243 +RKASLVERLNALN+SAGA Sbjct: 276 QRKASLVERLNALNSSAGA 294 Score = 100 bits (248), Expect(2) = 4e-51 Identities = 43/50 (86%), Positives = 48/50 (96%) Frame = -2 Query: 606 PHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 PHSDKRFAGFKKDEK LD++IHRKYIYGGHVADYMRS+A+EEPEK+Q HF Sbjct: 174 PHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHF 223 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/44 (52%), Positives = 26/44 (59%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIPPQ*QEICWFQE 572 FRALLDVGLIRTTTGNRVF DIP + F++ Sbjct: 142 FRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKK 185
>RL5B_ORYSA (Q8L4L4) 60S ribosomal protein L5-2| Length = 304 Score = 120 bits (301), Expect(2) = 1e-50 Identities = 60/79 (75%), Positives = 67/79 (84%) Frame = -3 Query: 479 PRSTKLTSSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYE 300 P + SEY+KKGI AD ME++YKKVHAAIRADP+MAKSTK P THKRYN KKLTYE Sbjct: 216 PEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYE 275 Query: 299 ERKASLVERLNALNNSAGA 243 +RKASLVERLNALN+SAGA Sbjct: 276 QRKASLVERLNALNSSAGA 294 Score = 100 bits (248), Expect(2) = 1e-50 Identities = 43/50 (86%), Positives = 48/50 (96%) Frame = -2 Query: 606 PHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 PHSDKRFAGFKKDEK LD++IHRKYIYGGHVADYMRS+A+EEPEK+Q HF Sbjct: 174 PHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHF 223 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/44 (52%), Positives = 26/44 (59%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIPPQ*QEICWFQE 572 FRALLDVGLIRTTTGNRVF DIP + F++ Sbjct: 142 FRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKK 185
>RL5_CUCSA (Q6UNT2) 60S ribosomal protein L5| Length = 302 Score = 107 bits (267), Expect(3) = 2e-48 Identities = 52/69 (75%), Positives = 59/69 (85%) Frame = -3 Query: 455 SEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVE 276 SEYIKKGI AD++E +YKKVHAAIRA+P KS KP PK HKRYN KKLTY+ERKA LVE Sbjct: 223 SEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVE 282 Query: 275 RLNALNNSA 249 RLNALN++A Sbjct: 283 RLNALNSAA 291 Score = 84.7 bits (208), Expect(3) = 2e-48 Identities = 35/50 (70%), Positives = 44/50 (88%) Frame = -2 Query: 606 PHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 PHSDKRFAG+ K+ + LD E+HRKYI+GGHVA YMR+L ++EPEKYQ+HF Sbjct: 173 PHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHF 222 Score = 41.2 bits (95), Expect(3) = 2e-48 Identities = 22/33 (66%), Positives = 22/33 (66%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 FRALLDVGLIRTTTGNRVF DIP Sbjct: 141 FRALLDVGLIRTTTGNRVFGALKGALDGGLDIP 173
>RL5_ARATH (P49227) 60S ribosomal protein L5| Length = 301 Score = 96.7 bits (239), Expect(3) = 1e-45 Identities = 46/78 (58%), Positives = 57/78 (73%) Frame = -3 Query: 479 PRSTKLTSSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYE 300 P + S YIKKG+ A+ +E +YKKVHAAIRA+P+ K+ K APK HKRYN KKLTYE Sbjct: 215 PEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYE 274 Query: 299 ERKASLVERLNALNNSAG 246 ERK L+ER+ ALN + G Sbjct: 275 ERKNKLIERVKALNGAGG 292 Score = 86.7 bits (213), Expect(3) = 1e-45 Identities = 37/50 (74%), Positives = 43/50 (86%) Frame = -2 Query: 606 PHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 PHSDKRFAGF K+ K LDAEIHR YIYGGHV++YM+ L ++EPEK QTHF Sbjct: 173 PHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHF 222 Score = 41.2 bits (95), Expect(3) = 1e-45 Identities = 22/33 (66%), Positives = 22/33 (66%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 FRALLDVGLIRTTTGNRVF DIP Sbjct: 141 FRALLDVGLIRTTTGNRVFGALKGALDGGLDIP 173
>RL5_SOLME (P93779) 60S ribosomal protein L5 (Fragment)| Length = 121 Score = 98.6 bits (244), Expect(2) = 9e-35 Identities = 48/70 (68%), Positives = 55/70 (78%) Frame = -3 Query: 455 SEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVE 276 S YIK ++ D++E +YKKVHAAIR DPS KS K PKTHKRYN KKLTYEERKA L+E Sbjct: 42 SSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIE 101 Query: 275 RLNALNNSAG 246 RLNALN + G Sbjct: 102 RLNALNAAGG 111 Score = 68.6 bits (166), Expect(2) = 9e-35 Identities = 29/39 (74%), Positives = 33/39 (84%) Frame = -2 Query: 573 KDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 KD K LDAE+HRKYIYGGHVA YM L ++EPEKYQ+HF Sbjct: 3 KDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHF 41
>RL5_BOMMO (O76190) 60S ribosomal protein L5| Length = 299 Score = 62.8 bits (151), Expect(3) = 1e-24 Identities = 38/78 (48%), Positives = 47/78 (60%), Gaps = 8/78 (10%) Frame = -3 Query: 473 STKLTSSEYIKKGISADDMEAVYKKVHAAIRADPS-MAKSTKPAPKTHKRYNPKKLTYEE 297 S K S+YIK G++AD +EA+YKK H AIRADPS K K KR+N +KLT E Sbjct: 218 SFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAE 277 Query: 296 R-------KASLVERLNA 264 R KAS ++RL A Sbjct: 278 RKNRIKQKKASFIKRLQA 295 Score = 57.4 bits (137), Expect(3) = 1e-24 Identities = 23/50 (46%), Positives = 35/50 (70%) Frame = -2 Query: 606 PHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 PHS KRF G+ + K +AE+HR +I+G HVA+YMRSL ++ + ++ F Sbjct: 174 PHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQF 223 Score = 33.1 bits (74), Expect(3) = 1e-24 Identities = 15/19 (78%), Positives = 15/19 (78%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVF 647 FR LDVGL RTTTG RVF Sbjct: 142 FRCYLDVGLARTTTGRRVF 160
>RL5_STYCL (Q26481) 60S ribosomal protein L5| Length = 294 Score = 59.3 bits (142), Expect(3) = 5e-24 Identities = 29/55 (52%), Positives = 40/55 (72%) Frame = -3 Query: 455 SEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERK 291 S+YIK G++AD +E +Y K HAAIR DP+ K T A KT KR+N KK+T+ +R+ Sbjct: 223 SQYIKHGVTADTVEEMYTKAHAAIREDPTPKKKTDFAGKT-KRWNRKKMTFSQRR 276 Score = 57.8 bits (138), Expect(3) = 5e-24 Identities = 22/50 (44%), Positives = 34/50 (68%) Frame = -2 Query: 606 PHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 PHS KRF G+ + AE+HR +I+GGHV++YM+ L +E+ E ++ F Sbjct: 173 PHSTKRFPGYDDESGDFSAEVHRSHIFGGHVSNYMKELEEEDEEAFKRQF 222 Score = 33.9 bits (76), Expect(3) = 5e-24 Identities = 18/33 (54%), Positives = 19/33 (57%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 FRA LDVGL RTTTG +VF DIP Sbjct: 141 FRAFLDVGLARTTTGAKVFGAMKGAADGGLDIP 173
>RL5_HELAN (O65353) 60S ribosomal protein L5| Length = 297 Score = 62.0 bits (149), Expect(3) = 3e-23 Identities = 25/49 (51%), Positives = 36/49 (73%) Frame = -2 Query: 603 HSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 HS KRF GF + K +A++HR++I+G HVA+YMR LA+E+ E Y+ F Sbjct: 175 HSTKRFPGFDSESKEFNADVHRQHIFGQHVAEYMRQLAEEDDEAYKRQF 223 Score = 53.1 bits (126), Expect(3) = 3e-23 Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 1/59 (1%) Frame = -3 Query: 455 SEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPA-PKTHKRYNPKKLTYEERKASL 282 S+YIK G++AD +E +YKK H AIRA+P+ K A PK KR+ KKLT E+R+ + Sbjct: 224 SQYIKLGLNADAIEGLYKKAHEAIRANPARKTVAKKAHPK--KRWTEKKLTREQRQGKV 280 Score = 33.1 bits (74), Expect(3) = 3e-23 Identities = 15/19 (78%), Positives = 16/19 (84%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVF 647 FR LDVGL+RTTTG RVF Sbjct: 142 FRCYLDVGLMRTTTGARVF 160
>RL5_NEUCR (O59953) 60S ribosomal protein L5 (CPR4)| Length = 301 Score = 65.9 bits (159), Expect(3) = 7e-23 Identities = 26/50 (52%), Positives = 39/50 (78%) Frame = -2 Query: 606 PHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 PHS+ RF G+ + + LDAE +KYI+GGHVA+YM +LAD++ E+Y++ F Sbjct: 177 PHSENRFPGYDMESEELDAETLKKYIFGGHVAEYMETLADDDEERYKSQF 226 Score = 48.9 bits (115), Expect(3) = 7e-23 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 8/75 (10%) Frame = -3 Query: 455 SEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHK--------RYNPKKLTYE 300 + YI+ + AD +E +Y + HAAIR DP K+ APK K +Y KLT E Sbjct: 227 NRYIEDDLEADGLEDLYAEAHAAIREDP-FKKAESEAPKKTKEEWKAESLKYKKSKLTRE 285 Query: 299 ERKASLVERLNALNN 255 +R A + ER+ AL + Sbjct: 286 QRAAGVQERIAALRS 300 Score = 32.3 bits (72), Expect(3) = 7e-23 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 F+A LDVGL RT+TG RVF IP Sbjct: 145 FKAFLDVGLARTSTGARVFGAMKGASDGGIFIP 177
>RL5B_SCHPO (O74306) 60S ribosomal protein L5-B| Length = 294 Score = 63.5 bits (153), Expect(3) = 2e-21 Identities = 29/57 (50%), Positives = 37/57 (64%) Frame = -2 Query: 606 PHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFK*VHQEG 436 PHS RF GF + + LD E RKYIYGGHVA+YM L D++ E+YQ F + +G Sbjct: 174 PHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADG 230 Score = 47.4 bits (111), Expect(3) = 2e-21 Identities = 32/75 (42%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Frame = -3 Query: 455 SEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHK---RYNPKKLTYEERKAS 285 S I GI +D +E +Y + +A IR DPS KS K A +Y +KLT EERK Sbjct: 224 SGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERK-- 281 Query: 284 LVERLNALNNSAGAA 240 ER NA AG A Sbjct: 282 --ERFNAKVIEAGRA 294 Score = 31.2 bits (69), Expect(3) = 2e-21 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 F+ LDVGL RT+TG+RVF IP Sbjct: 142 FKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIP 174
>RL5B_XENLA (P15126) 60S ribosomal protein L5-B| Length = 295 Score = 55.5 bits (132), Expect(3) = 8e-21 Identities = 21/52 (40%), Positives = 35/52 (67%) Frame = -2 Query: 612 TFPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 + PHS KRF G+ + K + E+HRK+I+ ++A+YMR L +E+ + Y+ F Sbjct: 171 SIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNIAEYMRLLMEEDEDAYKKQF 222 Score = 53.5 bits (127), Expect(3) = 8e-21 Identities = 26/61 (42%), Positives = 39/61 (63%) Frame = -3 Query: 455 SEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVE 276 S+YIK G++AD +E +YKK HA IR +P K K K KR+N KL+ E++K + + Sbjct: 223 SQYIKNGVAADQLEDIYKKAHAGIRENPVHEKKPKKEVK-KKRWNRAKLSLEQKKDRVAQ 281 Query: 275 R 273 + Sbjct: 282 K 282 Score = 31.2 bits (69), Expect(3) = 8e-21 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 F LD GL RTTTGN+VF IP Sbjct: 141 FTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIP 173
>RL5A_XENLA (P15125) 60S ribosomal protein L5-A| Length = 295 Score = 55.8 bits (133), Expect(3) = 1e-20 Identities = 22/52 (42%), Positives = 35/52 (67%) Frame = -2 Query: 612 TFPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 + PHS KRF G+ + K + E+HRK+I+ +VA+YMR L +E+ + Y+ F Sbjct: 171 SIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNVAEYMRLLMEEDEDAYKKQF 222 Score = 52.4 bits (124), Expect(3) = 1e-20 Identities = 26/61 (42%), Positives = 39/61 (63%) Frame = -3 Query: 455 SEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVE 276 S+YIK G++AD +E +YKK HA IR +P K K K KR+N KL+ E++K + + Sbjct: 223 SQYIKNGVTADQVEDLYKKAHAGIRENPVHEKKPKKEVK-KKRWNRAKLSLEQKKDRVAQ 281 Query: 275 R 273 + Sbjct: 282 K 282 Score = 31.2 bits (69), Expect(3) = 1e-20 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 F LD GL RTTTGN+VF IP Sbjct: 141 FTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIP 173
>RL5_MACFA (Q4R5M0) 60S ribosomal protein L5| Length = 296 Score = 60.1 bits (144), Expect(3) = 2e-20 Identities = 25/52 (48%), Positives = 36/52 (69%) Frame = -2 Query: 612 TFPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 + PHS KRF G+ + K +AE+HRK+I G +VADYMR L +E+ + Y+ F Sbjct: 171 SIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQF 222 Score = 47.8 bits (112), Expect(3) = 2e-20 Identities = 24/61 (39%), Positives = 37/61 (60%) Frame = -3 Query: 455 SEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVE 276 S+YIK ++ D ME +YKK HAAIR +P K K K KR+N K++ ++K + + Sbjct: 223 SQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKKDRVAQ 281 Query: 275 R 273 + Sbjct: 282 K 282 Score = 31.2 bits (69), Expect(3) = 2e-20 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 F LD GL RTTTGN+VF IP Sbjct: 141 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIP 173
>RL5_HUMAN (P46777) 60S ribosomal protein L5| Length = 296 Score = 60.1 bits (144), Expect(3) = 2e-20 Identities = 25/52 (48%), Positives = 36/52 (69%) Frame = -2 Query: 612 TFPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 + PHS KRF G+ + K +AE+HRK+I G +VADYMR L +E+ + Y+ F Sbjct: 171 SIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQF 222 Score = 47.8 bits (112), Expect(3) = 2e-20 Identities = 24/61 (39%), Positives = 37/61 (60%) Frame = -3 Query: 455 SEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVE 276 S+YIK ++ D ME +YKK HAAIR +P K K K KR+N K++ ++K + + Sbjct: 223 SQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKKDRVAQ 281 Query: 275 R 273 + Sbjct: 282 K 282 Score = 31.2 bits (69), Expect(3) = 2e-20 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 F LD GL RTTTGN+VF IP Sbjct: 141 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIP 173
>RL5_RAT (P09895) 60S ribosomal protein L5| Length = 296 Score = 60.1 bits (144), Expect(3) = 2e-20 Identities = 25/52 (48%), Positives = 36/52 (69%) Frame = -2 Query: 612 TFPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 + PHS KRF G+ + K +AE+HRK+I G +VADYMR L +E+ + Y+ F Sbjct: 171 SIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQF 222 Score = 47.4 bits (111), Expect(3) = 2e-20 Identities = 24/61 (39%), Positives = 37/61 (60%) Frame = -3 Query: 455 SEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVE 276 S+YIK ++ D ME +YKK HAAIR +P K K K KR+N K++ ++K + + Sbjct: 223 SQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKKDRVAQ 281 Query: 275 R 273 + Sbjct: 282 K 282 Score = 31.2 bits (69), Expect(3) = 2e-20 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 F LD GL RTTTGN+VF IP Sbjct: 141 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIP 173
>RL5_MOUSE (P47962) 60S ribosomal protein L5| Length = 296 Score = 60.1 bits (144), Expect(3) = 2e-20 Identities = 25/52 (48%), Positives = 36/52 (69%) Frame = -2 Query: 612 TFPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 + PHS KRF G+ + K +AE+HRK+I G +VADYMR L +E+ + Y+ F Sbjct: 171 SIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQF 222 Score = 47.4 bits (111), Expect(3) = 2e-20 Identities = 24/61 (39%), Positives = 37/61 (60%) Frame = -3 Query: 455 SEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVE 276 S+YIK ++ D ME +YKK HAAIR +P K K K KR+N K++ ++K + + Sbjct: 223 SQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKKDRVAQ 281 Query: 275 R 273 + Sbjct: 282 K 282 Score = 31.2 bits (69), Expect(3) = 2e-20 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 F LD GL RTTTGN+VF IP Sbjct: 141 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIP 173
>RL5_CHICK (P22451) 60S ribosomal protein L5| Length = 296 Score = 60.1 bits (144), Expect(3) = 3e-20 Identities = 25/52 (48%), Positives = 36/52 (69%) Frame = -2 Query: 612 TFPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 + PHS KRF G+ + K +AE+HRK+I G +VADYMR L +E+ + Y+ F Sbjct: 171 SIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQF 222 Score = 47.0 bits (110), Expect(3) = 3e-20 Identities = 25/61 (40%), Positives = 36/61 (59%) Frame = -3 Query: 455 SEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVE 276 S+YIK I+ D ME +YKK HAAIR +P K K K KR N K++ ++K + + Sbjct: 223 SQYIKNNITPDGMEEMYKKAHAAIRDNPVHEKKPKREVK-KKRVNSTKMSLAQKKDRVAQ 281 Query: 275 R 273 + Sbjct: 282 K 282 Score = 31.2 bits (69), Expect(3) = 3e-20 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 F LD GL RTTTGN+VF IP Sbjct: 141 FTCYLDAGLARTTTGNKVFGALKGAVDGGLSIP 173
>RL5_YEAST (P26321) 60S ribosomal protein L5 (L1) (YL3) (Ribosomal 5S| RNA-binding protein) Length = 296 Score = 57.4 bits (137), Expect(3) = 6e-19 Identities = 23/51 (45%), Positives = 35/51 (68%) Frame = -2 Query: 606 PHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFK 454 PHS+ RF G+ + + +D E+ R YI+GGHV+ YM LAD++ E++ FK Sbjct: 173 PHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFK 223 Score = 45.4 bits (106), Expect(3) = 6e-19 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 5/68 (7%) Frame = -3 Query: 449 YIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTH-----KRYNPKKLTYEERKAS 285 Y+ I AD +E +Y H AIRADP+ + K K K+Y KL+ EER A Sbjct: 225 YLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAAR 284 Query: 284 LVERLNAL 261 + ++ AL Sbjct: 285 VAAKIAAL 292 Score = 30.8 bits (68), Expect(3) = 6e-19 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 F+ LD+GL RTTTG RVF +P Sbjct: 141 FKVFLDIGLQRTTTGARVFGALKGASDGGLYVP 173
>RL5_CAEEL (P49405) 60S ribosomal protein L5| Length = 293 Score = 57.4 bits (137), Expect(2) = 1e-18 Identities = 28/61 (45%), Positives = 43/61 (70%) Frame = -3 Query: 455 SEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTYEERKASLVE 276 S+++ G++AD++ A Y+KVH+AIRAD S A K A K KR+ K+LTY+ERK + + Sbjct: 223 SKFLAAGLNADNLVATYQKVHSAIRADASPA--AKKAAKPSKRHTAKRLTYDERKQRVAD 280 Query: 275 R 273 + Sbjct: 281 K 281 Score = 55.8 bits (133), Expect(2) = 1e-18 Identities = 24/50 (48%), Positives = 33/50 (66%) Frame = -2 Query: 606 PHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 PHS+ RF GF ++ K +AE HR I G HVADYM L +E+ ++Y+ F Sbjct: 173 PHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQF 222 Score = 33.1 bits (74), Expect = 0.84 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIPPQ*QEICWF-QEGRE 563 F+A+LD+GL RTTTG+++F ++P F QE +E Sbjct: 141 FKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKE 188
>RL5_ANOGA (O44248) 60S ribosomal protein L5| Length = 327 Score = 59.7 bits (143), Expect(3) = 2e-18 Identities = 25/50 (50%), Positives = 37/50 (74%) Frame = -2 Query: 606 PHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 PHS KRF G+ + KS +AE+HR +I+G HVA+YMR+L +E+ E ++ F Sbjct: 174 PHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTLEEEDEEAFKRQF 223 Score = 38.5 bits (88), Expect(3) = 2e-18 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Frame = -3 Query: 455 SEYIKKGISADDMEAVYKKVHAAIR-ADPSMAKSTKPAPKTHKRY 324 S+YI GI ADD+E +YK HA+IR PS + +P++ R+ Sbjct: 224 SKYISLGIKADDIENIYKNAHASIRKIPPSRRNPRRRSPRSGGRW 268 Score = 33.9 bits (76), Expect(3) = 2e-18 Identities = 17/33 (51%), Positives = 19/33 (57%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 FR LDVGL RTTTG+RVF +IP Sbjct: 142 FRCYLDVGLARTTTGSRVFGAMKGAVDGGLNIP 174
>RL5_DUNSA (O22608) 60S ribosomal protein L5| Length = 271 Score = 69.7 bits (169), Expect(2) = 3e-14 Identities = 29/50 (58%), Positives = 39/50 (78%) Frame = -2 Query: 606 PHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHF 457 PH++KRF G+ +K LD E+ +KYIYGGHVA+Y ++ +EEPEKYQ HF Sbjct: 174 PHNEKRFVGYA--DKKLDTEVLQKYIYGGHVAEYQETMQEEEPEKYQAHF 221 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/59 (33%), Positives = 31/59 (52%) Frame = -3 Query: 491 QMRNPRSTKLTSSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPK 315 Q P + S Y++ I D +E +YK+VHA IR +P K + P KR++P+ Sbjct: 210 QEEEPEKYQAHFSSYVENEIEPDGIEDMYKEVHAKIRENPCPPKKERTKPADAKRWSPQ 268 Score = 28.5 bits (62), Expect(2) = 3e-14 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 F LLD GL RT+TG++VF DIP Sbjct: 142 FYCLLDTGLKRTSTGSKVFAAMKGALDGGLDIP 174
>RL5A_SCHPO (P52822) 60S ribosomal protein L5-A| Length = 294 Score = 63.5 bits (153), Expect(2) = 3e-13 Identities = 29/57 (50%), Positives = 37/57 (64%) Frame = -2 Query: 606 PHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFK*VHQEG 436 PHS RF GF + + LD E RKYIYGGHVA+YM L D++ E+YQ F + +G Sbjct: 174 PHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADG 230 Score = 31.2 bits (69), Expect(2) = 3e-13 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -1 Query: 703 FRALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 F+ LDVGL RT+TG+RVF IP Sbjct: 142 FKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIP 174
>RL18_PYRAE (Q8ZVV7) 50S ribosomal protein L18P| Length = 205 Score = 30.8 bits (68), Expect(2) = 0.14 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -2 Query: 531 IYGGHVADYMRSLADEEPEKYQTHFK*VHQEG 436 I G HVA+Y L +E PE Y+ F Q G Sbjct: 143 IKGKHVAEYAEKLKEENPEAYKARFSRYLQRG 174 Score = 23.9 bits (50), Expect(2) = 0.14 Identities = 12/31 (38%), Positives = 14/31 (45%) Frame = -1 Query: 697 ALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 A+LD+GL R G RVF IP Sbjct: 101 AILDIGLHRPAPGARVFAVLKGALDAGLKIP 131
>RL18_METKA (Q8TZA5) 50S ribosomal protein L18P| Length = 202 Score = 28.5 bits (62), Expect(2) = 0.18 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = -2 Query: 531 IYGGHVADYMRSLADEEPEKYQTHF 457 I G H+A+ R + +E+PE+Y+ F Sbjct: 147 IRGEHIANLARQIKEEDPEEYERRF 171 Score = 25.8 bits (55), Expect(2) = 0.18 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 700 RALLDVGLIRTTTGNRVFXXXXXXXXXXXDIP 605 RA++D+GL R G+RVF DIP Sbjct: 104 RAVIDIGLHRPVRGSRVFAMLKGALDAGMDIP 135
>MYF6_FUGRU (Q6SYV5) Myogenic factor 6 (Myf-6) (Muscle-specific regulatory| factor 4) Length = 239 Score = 31.2 bits (69), Expect = 3.2 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = +2 Query: 605 GNVQTTVQSSLKCTKHTVSSRSPDKTNIQE 694 GN +++ SSL C VSS S DKTN+++ Sbjct: 205 GNCESSATSSLLCLSSIVSSISDDKTNLRQ 234
>GLYA_ARCFU (O29406) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 438 Score = 31.2 bits (69), Expect = 3.2 Identities = 15/65 (23%), Positives = 34/65 (52%) Frame = -3 Query: 482 NPRSTKLTSSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNPKKLTY 303 NP ++ E + G+ ++M A+ + + AAI+ S+ + + +R+N K ++ Sbjct: 367 NPSGIRIGVQEVTRIGMKEEEMRAIAEIMDAAIKEKKSVDELRNEVKELKERFNVIKYSF 426 Query: 302 EERKA 288 +E +A Sbjct: 427 DESEA 431
>ZN622_CHICK (Q90Y35) Zinc finger protein 622 (Zn-finger protein C47)| Length = 405 Score = 30.8 bits (68), Expect = 4.2 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = -3 Query: 476 RSTKLTSSEYIKKGISAD--DMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNP 318 + K+ + + ++KG++ + D + + + AIRA PS + P P +H +P Sbjct: 104 KKVKILNEKNLEKGLAVESVDKDEMNAAIQQAIRAQPSSSPKKVPLPPSHASSSP 158
>RL5_RABIT (P19949) 60S ribosomal protein L5 (Fragments)| Length = 101 Score = 30.4 bits (67), Expect = 5.4 Identities = 20/75 (26%), Positives = 35/75 (46%) Frame = -3 Query: 497 R*QMRNPRSTKLTSSEYIKKGISADDMEAVYKKVHAAIRADPSMAKSTKPAPKTHKRYNP 318 R Q++ R + + Y +K + D HAAIR +P K K K KR+N Sbjct: 14 RYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPAHAAIRENPVYEKKPKREVK-KKRWNR 72 Query: 317 KKLTYEERKASLVER 273 K++ ++K + ++ Sbjct: 73 PKMSLAQKKDRVAQK 87
>OTUD3_HUMAN (Q5T2D3) OTU domain-containing protein 3| Length = 398 Score = 30.4 bits (67), Expect = 5.4 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = -2 Query: 567 EKSLDAEIHRKYIYGGHVADYMRSLAD--EEPEKYQTHFK*VHQE 439 EKS E+H Y YG H D +R + D E P QT F+ +HQ+ Sbjct: 166 EKSSVRELHIAYRYGEHY-DSVRRINDNSEAPAHLQTDFQMLHQD 209
>SCNNB_RAT (P37090) Amiloride-sensitive sodium channel beta-subunit| (Epithelial Na+ channel beta subunit) (Beta ENaC) (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB) (Beta NaCH) Length = 638 Score = 30.0 bits (66), Expect = 7.1 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +3 Query: 459 SEFGTSRVPHLLATSCSQQHALHRCTCGESQHP 557 S++ T+ SC Q H +H C+CG +P Sbjct: 373 SDYNTTYSIQACLHSCFQDHMIHNCSCGHYLYP 405
>Y1664_METJA (Q59058) Hypothetical protein MJ1664| Length = 226 Score = 30.0 bits (66), Expect = 7.1 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 5/82 (6%) Frame = -3 Query: 491 QMRNPRSTKLTSSEYIKKGISADDMEAVYKKVH---AAIRADPSMAKSTKPAPKTHKRYN 321 +++N + ++ EY G S+D+ +YK + + IR +M + PK + + Sbjct: 5 KLKNEKEVRIKFGEYKLTGFSSDNGNNLYKLFNLTLSKIRYRKAMLEHNFQLPKIKESHK 64 Query: 320 PKKLT--YEERKASLVERLNAL 261 PK++T +E +E +N + Sbjct: 65 PKEITEKIKENDIYFLELINEI 86
>YNC3_YEAST (P53971) RING finger protein YNL023C| Length = 965 Score = 30.0 bits (66), Expect = 7.1 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = +3 Query: 492 LATSCSQQHALHRC---TCGESQHPETSRPS*NQQISCHCGGMSRPPSKAPLSAPNTRFP 662 L SCS +C CG S+ S +QI C+CG +R A + T+FP Sbjct: 212 LPLSCSIHTCKKKCHPGLCGPCPEMIISKDSPKKQIKCYCGNHTR----ANIKCSETKFP 267
>CTR3_MOUSE (P70423) Cationic amino acid transporter 3 (CAT-3) (Solute carrier| family 7 member 3) (Cationic amino acid transporter y+) Length = 618 Score = 30.0 bits (66), Expect = 7.1 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = +1 Query: 460 VSLVLLGFLIC*RPHVVSNMPSIDVLAVNLSIQRLLVLLETSKSLVT 600 +S L G ++ PHV++ P LA+ L + LLVL + +LVT Sbjct: 144 ISRTLKGTILLKMPHVLAEYPDFFALALVLLLTGLLVLGASKSALVT 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,808,340 Number of Sequences: 219361 Number of extensions: 1835632 Number of successful extensions: 5884 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 5536 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5872 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7026286028 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
