>gb|AY109269.1| Zea mays PCO100673 mRNA sequence
          Length = 997

 Score =  101 bits (51), Expect = 2e-18
 Identities = 111/131 (84%)
 Strand = Plus / Minus

                                                                       
Query: 285 tcatctagaaggtccttcgatcttctgtctcagctgttcatagttttgcaactcctccat 344
           ||||||||||||||||||||||||||| |||| |||||| |||||||| | ||| |||| 
Sbjct: 525 tcatctagaaggtccttcgatcttctgcctcaactgttcgtagttttgtagctcgtccag 466

                                                                       
Query: 345 tgacaatgacggtgagatatcacccaacaccgtcataaaatcttcagtctcgacaatgac 404
            || |  ||||||| |||||| || |||||||| |||||||| ||  ||||||| |||||
Sbjct: 465 agagagcgacggtgcgatatctcctaacaccgtgataaaatcgtcgatctcgacgatgac 406

                      
Query: 405 ttcttctgcac 415
           |||||| ||||
Sbjct: 405 ttcttcggcac 395

>ref|XM_473901.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2823

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                        
Query: 285  tcatctagaaggtccttcgatcttctgtctcagctgttcatagttttgcaactcctccat 344
            ||||||||| ||||| || |||||||  |||| ||||||||||||||| || || || ||
Sbjct: 2823 tcatctagatggtccctcaatcttcttcctcaactgttcatagttttgtaattcttctat 2764

                                                      
Query: 345  tgacaatgacggtgagatatcacccaacaccgtcataaaatc 386
             ||||| || |||| |||||| || ||||| ||||| |||||
Sbjct: 2763 agacaacgatggtgtgatatcccctaacactgtcatgaaatc 2722

>dbj|AK067035.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089G04, full
            insert sequence
          Length = 3293

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                        
Query: 285  tcatctagaaggtccttcgatcttctgtctcagctgttcatagttttgcaactcctccat 344
            ||||||||| ||||| || |||||||  |||| ||||||||||||||| || || || ||
Sbjct: 2852 tcatctagatggtccctcaatcttcttcctcaactgttcatagttttgtaattcttctat 2793

                                                      
Query: 345  tgacaatgacggtgagatatcacccaacaccgtcataaaatc 386
             ||||| || |||| |||||| || ||||| ||||| |||||
Sbjct: 2792 agacaacgatggtgtgatatcccctaacactgtcatgaaatc 2751

>emb|AL606648.3|OSJN00093 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093O08,
             complete sequence
          Length = 148860

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 75/91 (82%)
 Strand = Plus / Plus

                                                                         
Query: 285   tcatctagaaggtccttcgatcttctgtctcagctgttcatagttttgcaactcctccat 344
             ||||||||| ||||| || |||||||  |||| ||||||||||||||| || || || ||
Sbjct: 95373 tcatctagatggtccctcaatcttcttcctcaactgttcatagttttgtaattcttctat 95432

                                            
Query: 345   tgacaatgacggtgagatatcacccaacacc 375
              ||||| || |||| |||||| || ||||||
Sbjct: 95433 agacaacgatggtgtgatatcccctaacacc 95463

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 75/91 (82%)
 Strand = Plus / Plus

                                                                            
Query: 285      tcatctagaaggtccttcgatcttctgtctcagctgttcatagttttgcaactcctccat 344
                ||||||||| ||||| || |||||||  |||| ||||||||||||||| || || || ||
Sbjct: 31398565 tcatctagatggtccctcaatcttcttcctcaactgttcatagttttgtaattcttctat 31398624

                                               
Query: 345      tgacaatgacggtgagatatcacccaacacc 375
                 ||||| || |||| |||||| || ||||||
Sbjct: 31398625 agacaacgatggtgtgatatcccctaacacc 31398655

>emb|AL442111.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818E11, complete
             sequence
          Length = 88090

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 75/91 (82%)
 Strand = Plus / Plus

                                                                         
Query: 285   tcatctagaaggtccttcgatcttctgtctcagctgttcatagttttgcaactcctccat 344
             ||||||||| ||||| || |||||||  |||| ||||||||||||||| || || || ||
Sbjct: 64603 tcatctagatggtccctcaatcttcttcctcaactgttcatagttttgtaattcttctat 64662

                                            
Query: 345   tgacaatgacggtgagatatcacccaacacc 375
              ||||| || |||| |||||| || ||||||
Sbjct: 64663 agacaacgatggtgcgatatcccctaacacc 64693

>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete
             sequence
          Length = 131195

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 75/91 (82%)
 Strand = Plus / Plus

                                                                         
Query: 285   tcatctagaaggtccttcgatcttctgtctcagctgttcatagttttgcaactcctccat 344
             ||||||||| ||||| || |||||||  |||| ||||||||||||||| || || || ||
Sbjct: 18346 tcatctagatggtccctcaatcttcttcctcaactgttcatagttttgtaattcttctat 18405

                                            
Query: 345   tgacaatgacggtgagatatcacccaacacc 375
              ||||| || |||| |||||| || ||||||
Sbjct: 18406 agacaacgatggtgcgatatcccctaacacc 18436

>emb|AL133328.13| Human DNA sequence from clone RP13-21D1 on chromosome X, complete
            sequence
          Length = 169649

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 209  ggctgtacactcaggcaatagttgattagttg 240
            ||||||||||||||| |||||||||| |||||
Sbjct: 6502 ggctgtacactcagggaatagttgatgagttg 6471

>gb|AC010737.4|AC010737 Homo sapiens BAC clone RP11-439L24 from Y, complete sequence
          Length = 70204

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 209  ggctgtacactcaggcaatagttgattagttg 240
            ||||||||||||||| |||||||||| |||||
Sbjct: 9001 ggctgtacactcagggaatagttgatgagttg 8970

>emb|BX001019.7| Zebrafish DNA sequence from clone DKEY-13H9 in linkage group 16,
             complete sequence
          Length = 226271

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 341   ccattgacaatgacggtgaga 361
             |||||||||||||||||||||
Sbjct: 28288 ccattgacaatgacggtgaga 28268

>gb|AC138394.7| Mus musculus chromosome 3, clone RP23-333D8, complete sequence
          Length = 227600

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 306    cttctgtctcagctgttcat 325
              ||||||||||||||||||||
Sbjct: 126001 cttctgtctcagctgttcat 126020

>gb|AY542761.1| Uncultured alpha proteobacterium clone OS015 16S ribosomal RNA
           gene, partial sequence
          Length = 657

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 230 ttgattagttgggggtgaaa 249
           ||||||||||||||||||||
Sbjct: 554 ttgattagttgggggtgaaa 573

>ref|XM_380273.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00097.1)
            partial mRNA
          Length = 1749

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  aaaggagcttggatgctttg 163
            ||||||||||||||||||||
Sbjct: 1481 aaaggagcttggatgctttg 1462

>emb|CR974467.8| Pig DNA sequence from clone CH242-235B3 on chromosome 17, complete
             sequence
          Length = 158975

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 66    acaaattcttaactggcaggtgcatcca 93
             ||||||||||  ||||||||||||||||
Sbjct: 85679 acaaattcttttctggcaggtgcatcca 85652

>gb|AC093494.1| Homo sapiens chromosome 3 clone RP11-1004I19 map 3p, complete sequence
          Length = 159189

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   gggtgaaaaacacacttttt 261
             ||||||||||||||||||||
Sbjct: 23138 gggtgaaaaacacacttttt 23119

>gb|AC018841.4| Homo sapiens chromosome 3 clone RP11-7F24 map 3p, complete sequence
          Length = 198264

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    gggtgaaaaacacacttttt 261
              ||||||||||||||||||||
Sbjct: 197792 gggtgaaaaacacacttttt 197773

>gb|DQ300657.1| Uncultured bacterium clone HF10_G3_P1 16S ribosomal RNA gene,
           partial sequence
          Length = 923

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 230 ttgattagttgggggtgaaa 249
           ||||||||||||||||||||
Sbjct: 514 ttgattagttgggggtgaaa 533

>dbj|AK222271.1| Ciona intestinalis cDNA, clone:ciem809d02, full insert sequence
          Length = 1499

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 aaaaggagcttggatgcttt 162
           ||||||||||||||||||||
Sbjct: 828 aaaaggagcttggatgcttt 809

>dbj|AB210568.1| Ciona intestinalis mRNA for transcription factor protein, complete
           cds, clone: cign070m05
          Length = 1490

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 aaaaggagcttggatgcttt 162
           ||||||||||||||||||||
Sbjct: 824 aaaaggagcttggatgcttt 805

>dbj|AB181459.1| Gibberella zeae genes for hypothetical protein similar to CG15021,
            hypothetical protein similar to beta-D-galactosidase,
            hypothetical protein similar to putative membrane
            protein, complete cds
          Length = 7931

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  aaaggagcttggatgctttg 163
            ||||||||||||||||||||
Sbjct: 1866 aaaggagcttggatgctttg 1847

>dbj|AK174714.1| Ciona intestinalis cDNA, clone:cign070m05, full insert sequence
          Length = 1491

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 aaaaggagcttggatgcttt 162
           ||||||||||||||||||||
Sbjct: 825 aaaaggagcttggatgcttt 806

>emb|BX470163.8| Zebrafish DNA sequence from clone DKEY-27A9 in linkage group 18, complete
              sequence
          Length = 241301

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     ttcttaactggcaggtgcat 90
              ||||||||||||||||||||
Sbjct: 211977 ttcttaactggcaggtgcat 211996

>emb|BX784024.10| Zebrafish DNA sequence from clone CH211-239J19 in linkage group 18,
             complete sequence
          Length = 110791

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    ttcttaactggcaggtgcat 90
             ||||||||||||||||||||
Sbjct: 18479 ttcttaactggcaggtgcat 18460

>gb|AC140369.2| Mus musculus BAC clone RP23-200L3 from 3, complete sequence
          Length = 191613

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    cttctgtctcagctgttcat 325
              ||||||||||||||||||||
Sbjct: 185352 cttctgtctcagctgttcat 185333

>gb|AC026166.5| Homo sapiens chromosome 3 clone RP11-126L4 map 3p, complete sequence
          Length = 163864

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   gggtgaaaaacacacttttt 261
             ||||||||||||||||||||
Sbjct: 83117 gggtgaaaaacacacttttt 83098


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,864,453
Number of Sequences: 3902068
Number of extensions: 3864453
Number of successful extensions: 71725
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71677
Number of HSP's gapped (non-prelim): 47
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)