ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags22g07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 573 bits (289), Expect = e-160 Identities = 361/388 (93%), Gaps = 11/388 (2%) Strand = Plus / Minus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaagttaaggaattna------gtct 54 |||||||||| ||||||||||||||||||||||||||||||||||||| | |||| Sbjct: 101156 ttatgtatctttgtttttattcttttttctttcttaagttaaggaatttacaacaagtct 101097 Query: 55 cttgcaaaaataactatcctacccctttctacaatctctctataatcccaccttgttaca 114 ||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct: 101096 cttccaaaaataactatcctatccctttctacaatctctctatat-----ccttgttaca 101042 Query: 115 taaggtaagtattgtataatcgttcggttttccgcgattttttccattcctctgtgtaaa 174 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 101041 taaggtaagtattgtataatagttcggttttccgcgattttttccattcctctgtgtaaa 100982 Query: 175 taccctaatatgggttcacaatcaataacatcctcaccatcaagagtaacgatcagtcga 234 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 100981 tagcctaatatgggttcacaatcaataacatcctcaccatcgagagtaacgatcagtcga 100922 Query: 235 agaacaccatgcattgatgggtgttgagggcccatattgactatcatgagatcnnnnnnn 294 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 100921 agaacaccatgcattgatgggtgttgagggcccatattgactatcatgagatcttttctt 100862 Query: 295 gtaagcggtagactcatatcctttcttccttaattcattattccatgaaaatggattatt 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 100861 gtaagcggtagactcatatcctttcttccttaattcattattccatgaaaatggattatt 100802 Query: 355 ccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||| |||||||||| Sbjct: 100801 ccatgaattcctcaaagcgaggctcatc 100774 Score = 496 bits (250), Expect = e-137 Identities = 276/287 (96%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 113834 ataatcccaccttgttacataaggtaagtattgtataatagttcggttttccgcgatttt 113893 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 113894 ttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcctcaccatc 113953 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 113954 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 114013 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 114014 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 114073 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 114074 tccatgaaaatggattattccatgaattcctcaaagcgaggctcatc 114120
>emb|AJ011848.1|HVU011848 Hordeum vulgare chloroplast rps15 (partial), ndhH, ndhI, ndhG, ndhE, psaC, ndhD and ndhA genes Length = 8125 Score = 527 bits (266), Expect = e-147 Identities = 280/287 (97%) Strand = Plus / Minus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 526 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 467 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 466 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 407 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 406 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 347 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 346 tatcatgagatctttttttgtaagcggtagactcatatcctttcttccttaattcattat 287 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 286 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 240
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 456 bits (230), Expect = e-125 Identities = 271/287 (94%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 113697 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 113756 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113757 ttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatc 113816 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 113817 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 113876 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 113877 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 113936 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 113937 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 113983 Score = 375 bits (189), Expect = e-101 Identities = 221/234 (94%) Strand = Plus / Minus Query: 149 cgattttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcct 208 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 101406 cgattttttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatctt 101347 Query: 209 caccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggccca 268 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 101346 caccatcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggccca 101287 Query: 269 tattgactatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaat 328 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 101286 tattgactatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaat 101227 Query: 329 tcattattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 101226 tcattattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 101173 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 ||||||||||||||| |||||||||||||||||||||| Sbjct: 101484 ttatgtatctgtgttcttattcttttttctttcttaag 101447
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 456 bits (230), Expect = e-125 Identities = 271/287 (94%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 113697 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 113756 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113757 ttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatc 113816 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 113817 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 113876 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 113877 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 113936 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 113937 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 113983 Score = 375 bits (189), Expect = e-101 Identities = 221/234 (94%) Strand = Plus / Minus Query: 149 cgattttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcct 208 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 101406 cgattttttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatctt 101347 Query: 209 caccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggccca 268 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 101346 caccatcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggccca 101287 Query: 269 tattgactatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaat 328 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 101286 tattgactatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaat 101227 Query: 329 tcattattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 101226 tcattattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 101173 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 ||||||||||||||| |||||||||||||||||||||| Sbjct: 101484 ttatgtatctgtgttcttattcttttttctttcttaag 101447
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 456 bits (230), Expect = e-125 Identities = 271/287 (94%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 113646 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 113705 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113706 ttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatc 113765 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 113766 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 113825 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 113826 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 113885 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 113886 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 113932 Score = 375 bits (189), Expect = e-101 Identities = 221/234 (94%) Strand = Plus / Minus Query: 149 cgattttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcct 208 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 101351 cgattttttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatctt 101292 Query: 209 caccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggccca 268 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 101291 caccatcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggccca 101232 Query: 269 tattgactatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaat 328 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 101231 tattgactatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaat 101172 Query: 329 tcattattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 101171 tcattattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 101118 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 ||||||||||||||| |||||||||||||||||||||| Sbjct: 101429 ttatgtatctgtgttcttattcttttttctttcttaag 101392
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 456 bits (230), Expect = e-125 Identities = 271/287 (94%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 113674 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 113733 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113734 ttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatc 113793 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 113794 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 113853 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 113854 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 113913 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 113914 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 113960 Score = 375 bits (189), Expect = e-101 Identities = 221/234 (94%) Strand = Plus / Minus Query: 149 cgattttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcct 208 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 101391 cgattttttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatctt 101332 Query: 209 caccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggccca 268 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 101331 caccatcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggccca 101272 Query: 269 tattgactatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaat 328 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 101271 tattgactatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaat 101212 Query: 329 tcattattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 101211 tcattattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 101158 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 ||||||||||||||| |||||||||||||||||||||| Sbjct: 101469 ttatgtatctgtgttcttattcttttttctttcttaag 101432
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 456 bits (230), Expect = e-125 Identities = 271/287 (94%) Strand = Plus / Minus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 20227 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 20168 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 20167 ttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatc 20108 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 20107 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 20048 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 20047 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 19988 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 19987 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 19941
>emb|AL731605.3|OSJN00246 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042F21, complete sequence Length = 167113 Score = 456 bits (230), Expect = e-125 Identities = 271/287 (94%) Strand = Plus / Minus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 147035 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 146976 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 146975 ttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatc 146916 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 146915 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 146856 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 146855 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 146796 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 146795 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 146749
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 456 bits (230), Expect = e-125 Identities = 271/287 (94%) Strand = Plus / Minus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 99630 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 99571 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 99570 ttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatc 99511 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 99510 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 99451 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 99450 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 99391 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 99390 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 99344 Score = 194 bits (98), Expect = 2e-46 Identities = 110/114 (96%) Strand = Plus / Plus Query: 149 cgattttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcct 208 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 111931 cgattttttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatctt 111990 Query: 209 caccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgag 262 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 111991 caccatcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgag 112044 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 ||||||||||||||| |||||||||||||||||||||| Sbjct: 111853 ttatgtatctgtgttcttattcttttttctttcttaag 111890
>gb|AC099402.2| Oryza sativa chromosome 10 clone OSJNBa0022D10, complete sequence Length = 144459 Score = 456 bits (230), Expect = e-125 Identities = 271/287 (94%) Strand = Plus / Minus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 33694 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 33635 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 33634 ttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatc 33575 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 33574 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 33515 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 33514 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 33455 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 33454 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 33408 Score = 194 bits (98), Expect = 2e-46 Identities = 110/114 (96%) Strand = Plus / Plus Query: 149 cgattttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcct 208 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 45995 cgattttttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatctt 46054 Query: 209 caccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgag 262 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 46055 caccatcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgag 46108 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 ||||||||||||||| |||||||||||||||||||||| Sbjct: 45917 ttatgtatctgtgttcttattcttttttctttcttaag 45954
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 456 bits (230), Expect = e-125 Identities = 271/287 (94%) Strand = Plus / Minus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 9062301 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 9062242 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 9062241 ttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatc 9062182 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 9062181 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 9062122 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 9062121 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 9062062 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 9062061 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 9062015 Score = 440 bits (222), Expect = e-120 Identities = 269/287 (93%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 23613366 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 23613425 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| Sbjct: 23613426 ttccattcctctgtgtaaatagcctaatatggattcacaatcaataacatcttcaccatc 23613485 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 23613486 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 23613545 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct: 23613546 tatcatgagatcttttcttgtaagcggtagactcatatcctttattccttaattcattat 23613605 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 23613606 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 23613652
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 456 bits (230), Expect = e-125 Identities = 271/287 (94%) Strand = Plus / Minus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 10393238 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 10393179 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 10393178 ttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatc 10393119 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 10393118 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 10393059 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 10393058 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 10392999 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 10392998 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 10392952 Score = 194 bits (98), Expect = 2e-46 Identities = 110/114 (96%) Strand = Plus / Plus Query: 149 cgattttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcct 208 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 10405539 cgattttttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatctt 10405598 Query: 209 caccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgag 262 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 10405599 caccatcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgag 10405652 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 248 ttgatgggtgttgagggcccatattgactatcatgagatc 287 |||||||||| ||||||||||||||||||||||||||||| Sbjct: 1214574 ttgatgggtggtgagggcccatattgactatcatgagatc 1214613 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 ||||||||||||||| |||||||||||||||||||||| Sbjct: 10405461 ttatgtatctgtgttcttattcttttttctttcttaag 10405498
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 456 bits (230), Expect = e-125 Identities = 271/287 (94%) Strand = Plus / Minus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 10399277 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 10399218 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 10399217 ttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatc 10399158 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 10399157 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 10399098 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 10399097 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 10399038 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 10399037 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 10398991 Score = 194 bits (98), Expect = 2e-46 Identities = 110/114 (96%) Strand = Plus / Plus Query: 149 cgattttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcct 208 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 10411578 cgattttttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatctt 10411637 Query: 209 caccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgag 262 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 10411638 caccatcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgag 10411691 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 248 ttgatgggtgttgagggcccatattgactatcatgagatc 287 |||||||||| ||||||||||||||||||||||||||||| Sbjct: 1214571 ttgatgggtggtgagggcccatattgactatcatgagatc 1214610 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 ||||||||||||||| |||||||||||||||||||||| Sbjct: 10411500 ttatgtatctgtgttcttattcttttttctttcttaag 10411537
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 456 bits (230), Expect = e-125 Identities = 271/287 (94%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 113640 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 113699 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113700 ttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatc 113759 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 113760 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 113819 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 113820 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 113879 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 113880 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 113926 Score = 375 bits (189), Expect = e-101 Identities = 221/234 (94%) Strand = Plus / Minus Query: 149 cgattttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcct 208 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 101346 cgattttttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatctt 101287 Query: 209 caccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggccca 268 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 101286 caccatcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggccca 101227 Query: 269 tattgactatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaat 328 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 101226 tattgactatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaat 101167 Query: 329 tcattattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 101166 tcattattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 101113 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 ||||||||||||||| |||||||||||||||||||||| Sbjct: 101424 ttatgtatctgtgttcttattcttttttctttcttaag 101387
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23, complete sequence Length = 130273 Score = 440 bits (222), Expect = e-120 Identities = 269/287 (93%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 56047 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 56106 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| Sbjct: 56107 ttccattcctctgtgtaaatagcctaatatggattcacaatcaataacatcttcaccatc 56166 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 56167 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 56226 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct: 56227 tatcatgagatcttttcttgtaagcggtagactcatatcctttattccttaattcattat 56286 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 56287 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 56333
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 440 bits (222), Expect = e-120 Identities = 269/287 (93%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 5629609 ataatcccaacgtgttacataaggtaagtattgtataatagtttggttttccgcgatttt 5629668 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 5629669 ttccattcctttgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatc 5629728 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 5629729 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 5629788 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 5629789 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 5629848 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 5629849 tccatgaaaatagattattccatgaattcctcaaaatgaggctcatc 5629895 Score = 375 bits (189), Expect = e-101 Identities = 221/234 (94%) Strand = Plus / Plus Query: 149 cgattttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcct 208 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 20964188 cgattttttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatctt 20964247 Query: 209 caccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggccca 268 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 20964248 caccatcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggccca 20964307 Query: 269 tattgactatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaat 328 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 20964308 tattgactatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaat 20964367 Query: 329 tcattattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 20964368 tcattattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 20964421 Score = 361 bits (182), Expect = 1e-96 Identities = 217/231 (93%) Strand = Plus / Minus Query: 152 ttttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcac 211 |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct: 5617345 ttttttccattcctttgtgtaaatagcctaatatgggttcacaatcaataacatcttcac 5617286 Query: 212 catcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatat 271 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 5617285 catcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatat 5617226 Query: 272 tgactatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattca 331 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 5617225 tgactatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattca 5617166 Query: 332 ttattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 5617165 ttattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 5617115 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 ||||||||||||||| |||||||||||||||||||||| Sbjct: 20964110 ttatgtatctgtgttcttattcttttttctttcttaag 20964147 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 ||||||||||||||| ||||||||||| |||||||||| Sbjct: 5617427 ttatgtatctgtgttcttattctttttcctttcttaag 5617390
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 440 bits (222), Expect = e-120 Identities = 269/287 (93%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 5629598 ataatcccaacgtgttacataaggtaagtattgtataatagtttggttttccgcgatttt 5629657 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 5629658 ttccattcctttgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatc 5629717 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 5629718 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 5629777 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 5629778 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 5629837 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 5629838 tccatgaaaatagattattccatgaattcctcaaaatgaggctcatc 5629884 Score = 375 bits (189), Expect = e-101 Identities = 221/234 (94%) Strand = Plus / Plus Query: 149 cgattttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcct 208 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 20890397 cgattttttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatctt 20890456 Query: 209 caccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggccca 268 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 20890457 caccatcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggccca 20890516 Query: 269 tattgactatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaat 328 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 20890517 tattgactatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaat 20890576 Query: 329 tcattattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 20890577 tcattattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 20890630 Score = 361 bits (182), Expect = 1e-96 Identities = 217/231 (93%) Strand = Plus / Minus Query: 152 ttttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcac 211 |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct: 5617334 ttttttccattcctttgtgtaaatagcctaatatgggttcacaatcaataacatcttcac 5617275 Query: 212 catcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatat 271 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 5617274 catcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatat 5617215 Query: 272 tgactatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattca 331 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 5617214 tgactatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattca 5617155 Query: 332 ttattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 5617154 ttattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 5617104 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 ||||||||||||||| |||||||||||||||||||||| Sbjct: 20890319 ttatgtatctgtgttcttattcttttttctttcttaag 20890356 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 ||||||||||||||| ||||||||||| |||||||||| Sbjct: 5617416 ttatgtatctgtgttcttattctttttcctttcttaag 5617379
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 139684 Score = 440 bits (222), Expect = e-120 Identities = 269/287 (93%) Strand = Plus / Minus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct: 23276 ataatcccaacgtgttacataaggtaagtattgtataatagtttggttttccgcgatttt 23217 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 23216 ttccattcctttgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatc 23157 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 23156 gagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgac 23097 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 23096 tatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattcattat 23037 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 23036 tccatgaaaatagattattccatgaattcctcaaaatgaggctcatc 22990 Score = 361 bits (182), Expect = 1e-96 Identities = 217/231 (93%) Strand = Plus / Plus Query: 152 ttttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcac 211 |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct: 35540 ttttttccattcctttgtgtaaatagcctaatatgggttcacaatcaataacatcttcac 35599 Query: 212 catcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatat 271 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 35600 catcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatat 35659 Query: 272 tgactatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattca 331 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 35660 tgactatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaattca 35719 Query: 332 ttattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 35720 ttattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 35770 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 ||||||||||||||| ||||||||||| |||||||||| Sbjct: 35458 ttatgtatctgtgttcttattctttttcctttcttaag 35495
>emb|AL713943.3|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa0030G16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 182172 Score = 375 bits (189), Expect = e-101 Identities = 221/234 (94%) Strand = Plus / Plus Query: 149 cgattttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcct 208 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 49673 cgattttttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatctt 49732 Query: 209 caccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggccca 268 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 49733 caccatcgagagtaacgatcagtcgaagaacaccatgcattgatgggtgctgagggccca 49792 Query: 269 tattgactatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaat 328 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 49793 tattgactatcatgagatcttttcttgtaagcggtagactcatatcctttcttccttaat 49852 Query: 329 tcattattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 49853 tcattattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 49906 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 ||||||||||||||| |||||||||||||||||||||| Sbjct: 49595 ttatgtatctgtgttcttattcttttttctttcttaag 49632
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 355 bits (179), Expect = 7e-95 Identities = 260/287 (90%), Gaps = 3/287 (1%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| |||||||||||||| ||| ||||||||||||||| Sbjct: 117422 ataatcccatcgtgttacataaggcaagtattgtataatacttctgttttccgcgatttt 117481 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 117482 ttccattcctctgtgtaaataccctaatatgggttcgcaatcaataacatcttcaccatc 117541 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117542 gagagtaacaatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 117601 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| |||||| ||||||||||||| || ||| | |||| |||| Sbjct: 117602 tatcatgagatcttttcttttaagcgatagactcatatcc-ttgttc--ttattctttat 117658 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 117659 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 117705 Score = 87.7 bits (44), Expect = 3e-14 Identities = 53/56 (94%) Strand = Plus / Minus Query: 327 attcattattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 105087 attctttattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 105032
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 355 bits (179), Expect = 7e-95 Identities = 260/287 (90%), Gaps = 3/287 (1%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| |||||||||||||| ||| ||||||||||||||| Sbjct: 117474 ataatcccatcgtgttacataaggcaagtattgtataatacttctgttttccgcgatttt 117533 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 117534 ttccattcctctgtgtaaataccctaatatgggttcgcaatcaataacatcttcaccatc 117593 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117594 gagagtaacaatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 117653 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| |||||| ||||||||||||| || ||| | |||| |||| Sbjct: 117654 tatcatgagatcttttcttttaagcgatagactcatatcc-ttgttc--ttattctttat 117710 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 117711 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 117757 Score = 87.7 bits (44), Expect = 3e-14 Identities = 53/56 (94%) Strand = Plus / Minus Query: 327 attcattattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 105135 attctttattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 105080
>emb|X56521.1|ZMNDHHSU Maize chloroplast DNA for ndhH subunit of NADH dehydrogenase Length = 1360 Score = 355 bits (179), Expect = 7e-95 Identities = 260/287 (90%), Gaps = 3/287 (1%) Strand = Plus / Minus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| |||||||||||||| ||| ||||||||||||||| Sbjct: 345 ataatcccatcgtgttacataaggcaagtattgtataatacttctgttttccgcgatttt 286 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 285 ttccattcctctgtgtaaataccctaatatgggttcgcaatcaataacatcttcaccatc 226 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 225 gagagtaacaatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 166 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| |||||| ||||||||||||| || ||| | |||| |||| Sbjct: 165 tatcatgagatcttttcttttaagcgatagactcatatcc-ttgttc--ttattctttat 109 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 108 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 62
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 333 bits (168), Expect = 3e-88 Identities = 206/221 (93%) Strand = Plus / Plus Query: 162 tcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatcaagagt 221 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 35299898 tcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatcgagagt 35299957 Query: 222 aacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgactatcat 281 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 35299958 aacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgactatcat 35300017 Query: 282 gagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattattccatg 341 |||||| |||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 35300018 gagatcttttcttgtaagcagtagactcatatcctttattccttaattcattattccatg 35300077 Query: 342 aaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||| |||||||||| Sbjct: 35300078 aaaatggattattccatgaattcctcaaaacgaggctcatc 35300118 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 335 ttccatgaaaatggattattccatg 359 |||||||||||||||||||| |||| Sbjct: 32736050 ttccatgaaaatggattatttcatg 32736026 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 889779 tgtttttattcttttttcttt 889799
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 333 bits (168), Expect = 3e-88 Identities = 206/221 (93%) Strand = Plus / Plus Query: 162 tcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatcaagagt 221 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 35389970 tcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatcgagagt 35390029 Query: 222 aacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgactatcat 281 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 35390030 aacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgactatcat 35390089 Query: 282 gagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattattccatg 341 |||||| |||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 35390090 gagatcttttcttgtaagcagtagactcatatcctttattccttaattcattattccatg 35390149 Query: 342 aaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||| |||||||||| Sbjct: 35390150 aaaatggattattccatgaattcctcaaaacgaggctcatc 35390190 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 335 ttccatgaaaatggattattccatg 359 |||||||||||||||||||| |||| Sbjct: 32826560 ttccatgaaaatggattatttcatg 32826536 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 889777 tgtttttattcttttttcttt 889797
>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete sequence Length = 116443 Score = 333 bits (168), Expect = 3e-88 Identities = 206/221 (93%) Strand = Plus / Minus Query: 162 tcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatcaagagt 221 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 68556 tcctctgtgtaaatagcctaatatgggttcacaatcaataacatcttcaccatcgagagt 68497 Query: 222 aacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgactatcat 281 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 68496 aacgatcagtcgaagaacaccatgcattgatgggtgctgagggcccatattgactatcat 68437 Query: 282 gagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattattccatg 341 |||||| |||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct: 68436 gagatcttttcttgtaagcagtagactcatatcctttattccttaattcattattccatg 68377 Query: 342 aaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||| |||||||||| Sbjct: 68376 aaaatggattattccatgaattcctcaaaacgaggctcatc 68336
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 323 bits (163), Expect = 2e-85 Identities = 256/287 (89%), Gaps = 3/287 (1%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| |||||||||||||| ||| |||||| || ||||| Sbjct: 38616 ataatcccatcgtgttacataaggcaagtattgtataatacttctgttttctgcaatttt 38675 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 38676 ttccattcctctgtgtaaataccctaatatgggttcgcaatcaataacatcttcaccatc 38735 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 38736 gagagtaacaatcagtcgaagaacaccatgcattgatgggtgttgaggacccatattcac 38795 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| |||||| ||||||||||||| || ||| | |||| |||| Sbjct: 38796 tatcatgagatcttttcttttaagcgatagactcatatcc-ttgttc--ttattctttat 38852 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 38853 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 38899 Score = 87.7 bits (44), Expect = 3e-14 Identities = 53/56 (94%) Strand = Plus / Minus Query: 327 attcattattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 26273 attctttattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 26218
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 323 bits (163), Expect = 2e-85 Identities = 256/287 (89%), Gaps = 3/287 (1%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| |||||||||||||| ||| |||||| || ||||| Sbjct: 118173 ataatcccatcgtgttacataaggcaagtattgtataatacttctgttttctgcaatttt 118232 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 118233 ttccattcctctgtgtaaataccctaatatgggttcgcaatcaataacatcttcaccatc 118292 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 118293 gagagtaacaatcagtcgaagaacaccatgcattgatgggtgttgaggacccatattcac 118352 Query: 276 tatcatgagatcnnnnnnngtaagcggtagactcatatcctttcttccttaattcattat 335 |||||||||||| |||||| ||||||||||||| || ||| | |||| |||| Sbjct: 118353 tatcatgagatcttttcttttaagcgatagactcatatcc-ttgttc--ttattctttat 118409 Query: 336 tccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 118410 tccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 118456 Score = 87.7 bits (44), Expect = 3e-14 Identities = 53/56 (94%) Strand = Plus / Minus Query: 327 attcattattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 105830 attctttattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 105775
>gb|AC160949.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0006E22, complete sequence Length = 128256 Score = 285 bits (144), Expect = 5e-74 Identities = 171/180 (95%) Strand = Plus / Plus Query: 108 tgttacataaggtaagtattgtataatcgttcggttttccgcgattttttccattcctct 167 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 56309 tgttacataaggtaagtattgtataatagttcggttttctgcgattttttccattcctct 56368 Query: 168 gtgtaaataccctaatatgggttcacaatcaataacatcctcaccatcaagagtaacgat 227 ||||||||| |||||||||| ||||||||||||||||| |||||||| ||| ||||||| Sbjct: 56369 gtgtaaatagcctaatatggattcacaatcaataacattttcaccatcgagactaacgat 56428 Query: 228 cagtcgaagaacaccatgcattgatgggtgttgagggcccatattgactatcatgagatc 287 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 56429 cagtcgaagaacaccatgcattgatgggtgctgagggcccatattgactatcatgagatc 56488 Score = 63.9 bits (32), Expect = 4e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 1 ttatgtatctgtgtttttattcttttttctttctta 36 ||||||||||||||| |||||||||||||||||||| Sbjct: 56159 ttatgtatctgtgttcttattcttttttctttctta 56194
>emb|X14556.1|CHSCRPS2 S.cereale chloroplast ORF 70 DNA, 3' end Length = 262 Score = 250 bits (126), Expect = 3e-63 Identities = 159/170 (93%), Gaps = 5/170 (2%) Strand = Plus / Minus Query: 60 aaaaataactatcctacccctttctacaatctctctataatcccaccttgttacataagg 119 ||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| Sbjct: 165 aaaaataactaccctatccctttctacaatctctctatat-----ccttgttacataagg 111 Query: 120 taagtattgtataatcgttcggttttccgcgattttttccattcctctgtgtaaataccc 179 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 110 taagtattgtataatagttcggttttccgcgattttttccattcctctgtgtaaatagcc 51 Query: 180 taatatgggttcacaatcaataacatcctcaccatcaagagtaacgatca 229 |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 50 taatatgggttcacaatcaataacatcctcaccatcgagagtaacgatca 1 Score = 99.6 bits (50), Expect = 7e-18 Identities = 69/76 (90%), Gaps = 6/76 (7%) Strand = Plus / Minus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaagttaaggaatt------nagtct 54 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 240 ttatgtatctgtgtttttattcttttttctttcttaagttaaggaatttataacaagtct 181 Query: 55 cttgcaaaaataacta 70 |||||||||||||||| Sbjct: 180 cttgcaaaaataacta 165
>emb|X14557.1|CHSCRPS3 S.cereale chloroplast ORF 393 DNA, 3' end Length = 272 Score = 242 bits (122), Expect = 7e-61 Identities = 131/134 (97%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 139 ataatcccaccttgttacataaggtaagtattgtataatagttcggttttccgcgatttt 198 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 199 ttccattcctctgtgtaaatagcctaatatgggttcacaatcaataacatcctcaccatc 258 Query: 216 aagagtaacgatca 229 ||||||||||||| Sbjct: 259 gagagtaacgatca 272
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 240 bits (121), Expect = 3e-60 Identities = 172/189 (91%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||||| |||||||||| ||||| |||||||| ||||| Sbjct: 128345 ataatcccaacgtgttacataaggtagatattgtataactgttcgattttccgcaatttt 128404 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| Sbjct: 128405 ttccattcctctgtgtaaataacctaatattggttcacaatcaataacatcttcaccatc 128464 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||| ||| || |||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 128465 tagagtaaggatgagccgaagaacaccatgcattgatgggtggtgaggtcccatattgac 128524 Query: 276 tatcatgag 284 ||||||||| Sbjct: 128525 tatcatgag 128533
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 238 bits (120), Expect = 1e-59 Identities = 162/176 (92%) Strand = Plus / Minus Query: 108 tgttacataaggtaagtattgtataatcgttcggttttccgcgattttttccattcctct 167 |||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 114662 tgttacataaggcaaatattgtataattgttcggttttccgctattttttccattcctct 114603 Query: 168 gtgtaaataccctaatatgggttcacaatcaataacatcctcaccatcaagagtaacgat 227 ||||||||| || ||||| |||||||||||||||||||||||||| || |||||||| || Sbjct: 114602 gtgtaaataacccaatataggttcacaatcaataacatcctcaccgtctagagtaacaat 114543 Query: 228 cagtcgaagaacaccatgcattgatgggtgttgagggcccatattgactatcatga 283 |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 114542 aagtctaagaacaccatgcattgatgggtggtgaggccccatattgactatcatga 114487
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 234 bits (118), Expect = 2e-58 Identities = 169/186 (90%) Strand = Plus / Minus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 120981 ataatcccaacgcgttacataaggcaaatattgtataattgttcggttttccgcaatttt 120922 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| |||||||| |||||||| |||| |||||| |||||||| Sbjct: 120921 ttccattcctctgtgtaaataacctaatattggttcacagtcaacaacatcttcaccatc 120862 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||| || |||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 120861 tagagtaacgatgagacgaagaacaccatgcattgatgggtggtgaggccccatattgac 120802 Query: 276 tatcat 281 |||||| Sbjct: 120801 tatcat 120796
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 232 bits (117), Expect = 7e-58 Identities = 171/189 (90%) Strand = Plus / Minus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| || ||||||||||| ||||| |||||||| ||||| Sbjct: 113705 ataatcccaacgtgttacataaggcaaatattgtataattgttcgattttccgcaatttt 113646 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||| |||||||||||||| || ||||| |||||||| ||||||||||| |||||||| Sbjct: 113645 ttccatacctctgtgtaaataacccaatattggttcacagtcaataacatcttcaccatc 113586 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 113585 tagagtaacaatgagtcgaagaacaccatgcattgatgggtggtgaggtcccatattgac 113526 Query: 276 tatcatgag 284 ||||||||| Sbjct: 113525 tatcatgag 113517
>gb|AC151668.38| Medicago truncatula clone mth2-6e22, complete sequence Length = 110949 Score = 232 bits (117), Expect = 7e-58 Identities = 171/189 (90%) Strand = Plus / Minus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| | ||||||||||| ||||| |||||||| ||||| Sbjct: 15480 ataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaatttt 15421 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||| |||||||||||||| || ||||| |||||||||||||||||||| |||||||| Sbjct: 15420 ttccatacctctgtgtaaataacccaatattggttcacaatcaataacatcttcaccatc 15361 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| || |||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct: 15360 cagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgac 15301 Query: 276 tatcatgag 284 ||||||||| Sbjct: 15300 tatcatgag 15292
>gb|AC160516.1| Medicago truncatula chromosome 7 BAC clone mth2-66d22, complete sequence Length = 116154 Score = 232 bits (117), Expect = 7e-58 Identities = 171/189 (90%) Strand = Plus / Minus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| | ||||||||||| ||||| |||||||| ||||| Sbjct: 59784 ataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaatttt 59725 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||| |||||||||||||| || ||||| |||||||||||||||||||| |||||||| Sbjct: 59724 ttccatacctctgtgtaaataacccaatattggttcacaatcaataacatcttcaccatc 59665 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| || |||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct: 59664 cagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgac 59605 Query: 276 tatcatgag 284 ||||||||| Sbjct: 59604 tatcatgag 59596
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 232 bits (117), Expect = 7e-58 Identities = 171/189 (90%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| | ||||||||||| ||||| |||||||| ||||| Sbjct: 12390 ataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaatttt 12449 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||| |||||||||||||| || ||||| |||||||||||||||||||| |||||||| Sbjct: 12450 ttccatacctctgtgtaaataacccaatattggttcacaatcaataacatcttcaccatc 12509 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| || |||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct: 12510 cagagtaacaataagtctaagaacaccatgcattgatgggtgttgaggccccatattgac 12569 Query: 276 tatcatgag 284 ||||||||| Sbjct: 12570 tatcatgag 12578
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 224 bits (113), Expect = 2e-55 Identities = 170/189 (89%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| | ||||||||||| ||||| |||||||| ||||| Sbjct: 119526 ataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaatttt 119585 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||| Sbjct: 119586 ttccattcctctgtgtaaataacccaatattggttcacaatcaataacatcttcaccatc 119645 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| || |||||||||||||||||||||||||| || ||||| |||||||| || Sbjct: 119646 cagagtaacaataagtcgaagaacaccatgcattgatggatggtgaggccccatatttac 119705 Query: 276 tatcatgag 284 ||||||||| Sbjct: 119706 tatcatgag 119714
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 216 bits (109), Expect = 4e-53 Identities = 169/189 (89%) Strand = Plus / Minus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| || ||||||||||| ||||| ||||| || ||||| Sbjct: 114824 ataatcccaacgtgttacataaggcaaatattgtataattgttcgattttctgcaatttt 114765 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||| |||||||||||||| || ||||| |||||||| ||||||||||| |||||||| Sbjct: 114764 ttccatacctctgtgtaaataacccaatattggttcacagtcaataacatcttcaccatc 114705 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| || |||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 114704 tagagtaacaatgagtcgaagaacaccgtgcattgatgggtggtgaggtcccatattgac 114645 Query: 276 tatcatgag 284 ||||||||| Sbjct: 114644 tatcatgag 114636
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 216 bits (109), Expect = 4e-53 Identities = 169/189 (89%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| || ||||||||||| ||||||||||| || ||||| Sbjct: 129108 ataatcccaacgtgttacataaggcaaatattgtataattgttcggttttctgcaatttt 129167 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||| |||||||| ||||| |||| ||| |||||||| ||||||||||| |||||||| Sbjct: 129168 ttccatccctctgtgcaaataacctagtattggttcacagtcaataacatcttcaccatc 129227 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 | ||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 129228 taaagtaacgatgagtcgaagaacaccgtgcattgatgggtgatgaggacccatattgac 129287 Query: 276 tatcatgag 284 ||||||||| Sbjct: 129288 tatcatgag 129296
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 216 bits (109), Expect = 4e-53 Identities = 169/189 (89%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| | ||||||||||| ||||||||||| || ||||| Sbjct: 123868 ataatcccaacgtgttacataaggcagatattgtataattgttcggttttctgcaatttt 123927 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| || |||| ||||| || ||||||||||| |||||||| Sbjct: 123928 ttccattcctctgtgtaaataacccaatacaggttcgcagtcaataacatcttcaccatc 123987 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct: 123988 tagagtaacgatgagtcgaagaacaccatgcattgaggggtggtgaggacccatattgac 124047 Query: 276 tatcatgag 284 ||||||||| Sbjct: 124048 tatcatgag 124056
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 216 bits (109), Expect = 4e-53 Identities = 169/189 (89%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| || ||||||||||| ||||| ||||| || ||||| Sbjct: 122049 ataatcccaacgtgttacataaggcaaatattgtataattgttcgattttctgcaatttt 122108 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||| |||||||||||||| || ||||| |||||||| ||||||||||| |||||||| Sbjct: 122109 ttccatacctctgtgtaaataacccaatattggttcacagtcaataacatcttcaccatc 122168 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| || |||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 122169 tagagtaacaatgagtcgaagaacaccgtgcattgatgggtggtgaggtcccatattgac 122228 Query: 276 tatcatgag 284 ||||||||| Sbjct: 122229 tatcatgag 122237
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 214 bits (108), Expect = 2e-52 Identities = 171/192 (89%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||||| |||||||||||||| ||||||||||| | ||||||||| || ||||| Sbjct: 122057 ataatcccaccgcgttacataaggtaaatattgtataattgctcggttttctgcaatttt 122116 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| || Sbjct: 122117 ttccattcctctgtgtaaataacccaatatgggttcacaatcaacaacatcctcaccgtc 122176 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| || | ||||||||||| ||||| |||||||| ||||| ||||||||||| Sbjct: 122177 tagagtaacaattaagcgaagaacaccgtgcatggatgggtggtgaggtcccatattgac 122236 Query: 276 tatcatgagatc 287 |||||| ||||| Sbjct: 122237 tatcataagatc 122248
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 214 bits (108), Expect = 2e-52 Identities = 171/192 (89%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||| ||||| ||||||||||| | ||||||||| || ||||| Sbjct: 122977 ataatcccatcgcgttacatacggtaaatattgtataattgctcggttttctgcaatttt 123036 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| Sbjct: 123037 ttccattcctctgtgtaaataacctaatatgggttcacagtcaacaacatcctcaccatc 123096 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| || | ||||||||||||||||| |||||||| ||||| ||||||||||| Sbjct: 123097 tagagtaacaattaagcgaagaacaccatgcatggatgggtggtgaggtcccatattgac 123156 Query: 276 tatcatgagatc 287 |||||| ||||| Sbjct: 123157 tatcataagatc 123168
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 210 bits (106), Expect = 3e-51 Identities = 166/186 (89%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||| || |||||||| |||||||||||||| ||||| Sbjct: 125165 ataatcccaacgtgttacataaggtaaatactgtataattgttcggttttccgcaatttt 125224 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||| ||||| |||||||| || ||||| |||||||| ||||||||||| |||||||| Sbjct: 125225 ttccatccctctatgtaaataacccaatattggttcacagtcaataacatcttcaccatc 125284 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| || |||||||||||||| |||||||||||||| ||||| |||| |||||| Sbjct: 125285 tagagtaacaatgagtcgaagaacaccgtgcattgatgggtgctgaggacccagattgac 125344 Query: 276 tatcat 281 |||||| Sbjct: 125345 tatcat 125350
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 208 bits (105), Expect = 1e-50 Identities = 168/189 (88%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 124304 ataatcccaacgtgttacataaggcaaatattgtataattgttcggttttccgcaatttt 124363 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||| ||||| |||||||| |||||||| ||||| || || | |||||| |||||||| Sbjct: 124364 ctccatccctctatgtaaataacctaatattggttcgcagtcgacaacatcttcaccatc 124423 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 124424 tagagtaacgatgagtcgaagaacaccgtgcattgatgggtgctgaggccccatattgac 124483 Query: 276 tatcatgag 284 ||||||||| Sbjct: 124484 tatcatgag 124492
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 208 bits (105), Expect = 1e-50 Identities = 168/189 (88%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 124302 ataatcccaacgtgttacataaggcaaatattgtataattgttcggttttccgcaatttt 124361 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||| ||||| |||||||| |||||||| ||||| || || | |||||| |||||||| Sbjct: 124362 ctccatccctctatgtaaataacctaatattggttcgcagtcgacaacatcttcaccatc 124421 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 124422 tagagtaacgatgagtcgaagaacaccgtgcattgatgggtgctgaggccccatattgac 124481 Query: 276 tatcatgag 284 ||||||||| Sbjct: 124482 tatcatgag 124490
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 206 bits (104), Expect = 4e-50 Identities = 161/180 (89%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||| |||||||||| ||||||||||| |||||||||||||| ||||| Sbjct: 128061 ataatcccaacgtgtcacataaggtagatattgtataattgttcggttttccgcaatttt 128120 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||||||||||||||||||| || |||||||||||||| || |||||||| || ||||| Sbjct: 128121 ttccattcctctgtgtaaataacccaatatgggttcacagtcgataacatcttcgccatc 128180 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| || ||||||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct: 128181 tagagtaacaatgagtcgaagaacaccatgcattgacgggtggtgaggacccatattgac 128240
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 202 bits (102), Expect = 6e-49 Identities = 165/186 (88%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| | ||||||||||| ||||||||||| || ||||| Sbjct: 122660 ataatcccaacgtgttacataaggcagatattgtataattgttcggttttctgcaatttt 122719 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||| ||||| |||||||| || |||||||||||||| ||||||||||| ||||| || Sbjct: 122720 ttccatccctctatgtaaataacccaatatgggttcacagtcaataacatcttcaccgtc 122779 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| || Sbjct: 122780 gagagtaacgatcaggcgaagaacaccgtgcattgatgggtggtgaggacccatattaac 122839 Query: 276 tatcat 281 |||||| Sbjct: 122840 tatcat 122845
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 200 bits (101), Expect = 2e-48 Identities = 167/189 (88%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 124903 ataatcccaacgtgttacataaggcaaatattgtataattgttcggttttccgcaatttt 124962 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||| ||||| |||||||| || ||||| ||||| || || | |||||| |||||||| Sbjct: 124963 ctccatccctctatgtaaataacccaatattggttcgcagtcgacaacatcttcaccatc 125022 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 125023 tagagtaacgatgagtcgaagaacaccgtgcattgatgggtgctgaggccccatattgac 125082 Query: 276 tatcatgag 284 ||||||||| Sbjct: 125083 tatcatgag 125091
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 200 bits (101), Expect = 2e-48 Identities = 167/189 (88%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||||| ||||||||||| ||||||||||| || ||||| Sbjct: 124490 ataatcccaacgtgttacataaggtagatattgtataattgttcggttttctgcaatttt 124549 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||| || ||||||||||| || ||||| |||||||| ||||||||||| |||||||| Sbjct: 124550 ttccatccccctgtgtaaataacccaatattggttcacagtcaataacatcttcaccatc 124609 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 | ||||| ||| |||||||||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 124610 caaagtaaggatgagtcgaagaacaccgtgcattgaggggtggtgaggtcccatattgac 124669 Query: 276 tatcatgag 284 ||||||||| Sbjct: 124670 tatcatgag 124678
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 200 bits (101), Expect = 2e-48 Identities = 167/189 (88%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| | |||||||| || ||||| ||||| || ||||| Sbjct: 131161 ataatcccaacgtgttacataaggaagatattgtatgattgttcgattttctgcaatttt 131220 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||| |||||||||||||| ||||||||||||||||| |||||||| || ||||| || Sbjct: 131221 ttccatccctctgtgtaaataacctaatatgggttcacagtcaataacgtcttcaccgtc 131280 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 |||||||| || |||||||||||||||||||||||||| || ||||| ||||||||||| Sbjct: 131281 tagagtaactatgagtcgaagaacaccatgcattgatggatggtgaggacccatattgac 131340 Query: 276 tatcatgag 284 ||||||||| Sbjct: 131341 tatcatgag 131349
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 200 bits (101), Expect = 2e-48 Identities = 167/189 (88%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||||| |||||||||||| | |||||||| | |||||||||||||| ||||| Sbjct: 127395 ataatcccaccgtgttacataaggcagatattgtattacagttcggttttccgcaatttt 127454 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||| |||| ||||||||| || ||||| || ||||||||||||||||| ||||| || Sbjct: 127455 ttccatccctcggtgtaaataacccaatattggctcacaatcaataacatcttcaccgtc 127514 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||| ||| || |||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 127515 tagagtaaggatgagccgaagaacaccatgcattgatgggtggtgaggtcccatattgac 127574 Query: 276 tatcatgag 284 ||||||||| Sbjct: 127575 tatcatgag 127583
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 200 bits (101), Expect = 2e-48 Identities = 167/189 (88%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 124171 ataatcccaacgtgttacataaggcaaatattgtataattgttcggttttccgcaatttt 124230 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||| ||||| |||||||| || ||||| ||||| || || | |||||| |||||||| Sbjct: 124231 ctccatccctctatgtaaataacccaatattggttcgcagtcgacaacatcttcaccatc 124290 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 124291 tagagtaacgatgagtcgaagaacaccgtgcattgatgggtgctgaggccccatattgac 124350 Query: 276 tatcatgag 284 ||||||||| Sbjct: 124351 tatcatgag 124359
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 200 bits (101), Expect = 2e-48 Identities = 167/189 (88%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 124217 ataatcccaacgtgttacataaggcaaatattgtataattgttcggttttccgcaatttt 124276 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||| ||||| |||||||| || ||||| ||||| || || | |||||| |||||||| Sbjct: 124277 ctccatccctctatgtaaataacccaatattggttcgcagtcgacaacatcttcaccatc 124336 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 124337 tagagtaacgatgagtcgaagaacaccgtgcattgatgggtgctgaggccccatattgac 124396 Query: 276 tatcatgag 284 ||||||||| Sbjct: 124397 tatcatgag 124405
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 200 bits (101), Expect = 2e-48 Identities = 167/189 (88%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||||| ||||||||||| ||||||||||| || ||||| Sbjct: 124768 ataatcccaacgtgttacataaggtagatattgtataattgttcggttttctgcaatttt 124827 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||| || ||||||||||| || ||||| |||||||| ||||||||||| |||||||| Sbjct: 124828 ttccatccccctgtgtaaataacccaatattggttcacagtcaataacatcttcaccatc 124887 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 | ||||| ||| |||||||||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 124888 caaagtaaggatgagtcgaagaacaccgtgcattgaggggtggtgaggtcccatattgac 124947 Query: 276 tatcatgag 284 ||||||||| Sbjct: 124948 tatcatgag 124956
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 200 bits (101), Expect = 2e-48 Identities = 167/189 (88%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 124901 ataatcccaacgtgttacataaggcaaatattgtataattgttcggttttccgcaatttt 124960 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||| ||||| |||||||| || ||||| ||||| || || | |||||| |||||||| Sbjct: 124961 ctccatccctctatgtaaataacccaatattggttcgcagtcgacaacatcttcaccatc 125020 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 125021 tagagtaacgatgagtcgaagaacaccgtgcattgatgggtgctgaggccccatattgac 125080 Query: 276 tatcatgag 284 ||||||||| Sbjct: 125081 tatcatgag 125089
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 200 bits (101), Expect = 2e-48 Identities = 167/189 (88%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 124669 ataatcccaacgtgttacataaggcaaatattgtataattgttcggttttccgcaatttt 124728 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||| ||||| |||||||| || ||||| ||||| || || | |||||| |||||||| Sbjct: 124729 ctccatccctctatgtaaataacccaatattggttcgcagtcgacaacatcttcaccatc 124788 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 124789 tagagtaacgatgagtcgaagaacaccgtgcattgatgggtgctgaggccccatattgac 124848 Query: 276 tatcatgag 284 ||||||||| Sbjct: 124849 tatcatgag 124857
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 200 bits (101), Expect = 2e-48 Identities = 167/189 (88%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 124184 ataatcccaacgtgttacataaggcaaatattgtataattgttcggttttccgcaatttt 124243 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||| ||||| |||||||| || ||||| ||||| || || | |||||| |||||||| Sbjct: 124244 ctccatccctctatgtaaataacccaatattggttcgcagtcgacaacatcttcaccatc 124303 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct: 124304 tagagtaacgatgagtcgaagaacaccgtgcattgatgggtgctgaggccccatattgac 124363 Query: 276 tatcatgag 284 ||||||||| Sbjct: 124364 tatcatgag 124372
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 192 bits (97), Expect = 6e-46 Identities = 166/189 (87%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| | ||||||||||| ||||| |||||||| ||||| Sbjct: 120742 ataatcccaacgtgttacataaggcagatattgtataattgttcgattttccgcaatttt 120801 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||| |||||||||||||| || | ||| |||||||| ||||||||||| ||||| || Sbjct: 120802 ttccatacctctgtgtaaataacccactatcggttcacagtcaataacatcttcaccgtc 120861 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 | ||||||||| ||||| |||||||| ||||||||||| || ||||||||||||||||| Sbjct: 120862 taaagtaacgatgagtcggagaacaccgtgcattgatggatggtgagggcccatattgac 120921 Query: 276 tatcatgag 284 ||||||||| Sbjct: 120922 tatcatgag 120930
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 176 bits (89), Expect = 4e-41 Identities = 164/189 (86%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||||||||| || ||||| ||||| ||||| |||||||| ||||| Sbjct: 125591 ataatcccaacgtgttacataaggcaaatattggataattgttcgattttccgcaatttt 125650 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 ||||| ||||| |||||||| || ||||| ||||| || || | |||||| |||||||| Sbjct: 125651 ctccatccctctatgtaaataacccaatattggttcgcagtcgacaacatcttcaccatc 125710 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 ||||||||||| ||||||||||| || |||||||||||||| ||||| ||||||||||| Sbjct: 125711 tagagtaacgatgagtcgaagaacgccgtgcattgatgggtgctgaggccccatattgac 125770 Query: 276 tatcatgag 284 ||||||||| Sbjct: 125771 tatcatgag 125779
>dbj|AB087490.1| Anthoceros formosae chloroplast ndhH mRNA for NADH dehydrogenase 49 kDa subunit, complete cds Length = 1201 Score = 165 bits (83), Expect = 1e-37 Identities = 152/175 (86%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||||| |||||||||||| | ||||| | ||| |||| ||||| || ||||| Sbjct: 986 ataatcccaccgtgttacataaggaagatattgaacaattgttctattttcagcaatttt 1045 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||||||||| || ||||| |||||||| |||||||||||| |||||| |||||||| Sbjct: 1046 ttccattcctctatgcaaataacctaatataggttcacaatcagtaacattttcaccatc 1105 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccata 270 |||||||| || ||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 1106 tagagtaactataagtcgaagaacaccatgcattgatgggtgatgaggacccata 1160
>emb|X14811.1|CHSCRPS1 S.cereale chloroplast ribosomal protein S15 (rpS15) gene in inverted repeat I (IR-I), complete cds Length = 770 Score = 159 bits (80), Expect = 8e-36 Identities = 86/88 (97%) Strand = Plus / Minus Query: 295 gtaagcggtagactcatatcctttcttccttaattcattattccatgaaaatggattatt 354 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 750 gtaagcggtagactcatatcgtttcttccttaattcattattccatgaaaatggattatt 691 Query: 355 ccatgaattcctcaaagtgaggctcatc 382 ||||||||||||||||| |||||||||| Sbjct: 690 ccatgaattcctcaaagcgaggctcatc 663
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 149 bits (75), Expect = 8e-33 Identities = 150/175 (85%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||||| |||||||||||| | ||||| | ||| |||| ||||| || ||||| Sbjct: 136700 ataatcccaccgtgttacataaggaagatattgaacaattgttctattttcagcaatttt 136759 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||||||||| || ||||| |||||||| ||||||||||| |||||| |||||||| Sbjct: 136760 ttccattcctctatgcaaataacctaatataagttcacaatcagtaacattttcaccatc 136819 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccata 270 ||||||| || ||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 136820 tggagtaactataagtcgaagaacaccatgcattgatgggtgatgaggacccata 136874
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 141 bits (71), Expect = 2e-30 Identities = 83/87 (95%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 14354971 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 14355030 Query: 156 ttccattcctctgtgtaaataccctaa 182 ||||||||||||||||||||| ||||| Sbjct: 14355031 ttccattcctctgtgtaaatagcctaa 14355057
>dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0022A24 Length = 148347 Score = 141 bits (71), Expect = 2e-30 Identities = 83/87 (95%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 76893 ataatcccaacgtgttacataaggtaagtattgtataatagttcggttttccgcgatttt 76952 Query: 156 ttccattcctctgtgtaaataccctaa 182 ||||||||||||||||||||| ||||| Sbjct: 76953 ttccattcctctgtgtaaatagcctaa 76979
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 133 bits (67), Expect = 5e-28 Identities = 82/87 (94%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | | ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 6824897 ataatcccaacgtattacataaggtaagtattgtataatagttcggttttccgcgatttt 6824956 Query: 156 ttccattcctctgtgtaaataccctaa 182 ||||||||||||||||||||| ||||| Sbjct: 6824957 ttccattcctctgtgtaaatagcctaa 6824983
>dbj|AP005197.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0592C06 Length = 160071 Score = 133 bits (67), Expect = 5e-28 Identities = 82/87 (94%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | | ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 119031 ataatcccaacgtattacataaggtaagtattgtataatagttcggttttccgcgatttt 119090 Query: 156 ttccattcctctgtgtaaataccctaa 182 ||||||||||||||||||||| ||||| Sbjct: 119091 ttccattcctctgtgtaaatagcctaa 119117
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 123 bits (62), Expect = 5e-25 Identities = 155/186 (83%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||||| ||||| | ||||||| ||| |||| ||||| || ||||| Sbjct: 103168 ataatcccatcgtgttacgtaaggaagatattgtacaattgttctattttcagctatttt 103227 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatc 215 |||||||||||| |||||||| ||||| | ||||| ||||| | |||||| || ||||| Sbjct: 103228 ttccattcctctatgtaaataacctaagacaggttcgcaatccaaaacatcttctccatc 103287 Query: 216 aagagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgac 275 | |||||| || |||||||||||||||||||||||||| || ||||| |||||| | || Sbjct: 103288 taaagtaacaataagtcgaagaacaccatgcattgatggatgatgaggacccatacttac 103347 Query: 276 tatcat 281 |||||| Sbjct: 103348 tatcat 103353
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 121 bits (61), Expect = 2e-24 Identities = 121/141 (85%) Strand = Plus / Plus Query: 142 ttttccgcgattttttccattcctctgtgtaaataccctaatatgggttcacaatcaata 201 ||||| |||||||||||||| |||| ||| ||||| || | ||| ||||||||||||||| Sbjct: 105180 ttttcagcgattttttccatacctcggtgcaaataacccagtataggttcacaatcaata 105239 Query: 202 acatcctcaccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttga 261 |||| || ||||| | |||||| || |||||||||||||||||||||||||| || ||| Sbjct: 105240 acattttccccatctaaagtaactataagtcgaagaacaccatgcattgatggatgatga 105299 Query: 262 gggcccatattgactatcatg 282 || |||||| | ||||||||| Sbjct: 105300 ggacccatacttactatcatg 105320
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 115 bits (58), Expect = 1e-22 Identities = 154/186 (82%) Strand = Plus / Minus Query: 97 taatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgattttt 156 |||||||| | ||| |||||||| | ||||| |||||||| | || || || ||||| Sbjct: 128304 taatcccatcgtgtaacataaggaagatattggataatcgtcctattctctgcaattttc 128245 Query: 157 tccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcaccatca 216 ||||||||||| || ||||| || | ||| |||||||||| | |||||| |||||||| Sbjct: 128244 tccattcctctatgcaaataaccaagtataggttcacaattagtaacattttcaccatct 128185 Query: 217 agagtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgact 276 |||||||| || |||||||||||||||||||||||||| || ||||| |||||| | ||| Sbjct: 128184 agagtaacaataagtcgaagaacaccatgcattgatggatgatgaggacccatacttact 128125 Query: 277 atcatg 282 |||||| Sbjct: 128124 atcatg 128119
>gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome Length = 157089 Score = 91.7 bits (46), Expect = 2e-15 Identities = 121/146 (82%) Strand = Plus / Plus Query: 142 ttttccgcgattttttccattcctctgtgtaaataccctaatatgggttcacaatcaata 201 ||||| || ||||||||||| |||| |||||||| ||||| || ||||||||||| || Sbjct: 16989 ttttcagcaattttttccatccctcgatgtaaataacctaaaataggttcacaatctatt 17048 Query: 202 acatcctcaccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgttga 261 |||| || |||||||||||||| || |||| ||| || |||||||| ||||| || || Sbjct: 17049 acattttctccatcaagagtaacaataagtctaaggactccatgcatggatggatggtgg 17108 Query: 262 gggcccatattgactatcatgagatc 287 || |||||| ||||||||||| |||| Sbjct: 17109 ggtcccatactgactatcatgggatc 17134
>gb|AC135959.22| Medicago truncatula clone mth2-26j19, complete sequence Length = 95871 Score = 91.7 bits (46), Expect = 2e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 219 agtaacgatcagtcgaagaacaccatgcattgatgggtgttgagggcccatattgactat 278 |||||| || |||||||||||||||| ||| |||||||||||||| |||||||||||||| Sbjct: 64492 agtaacaataagtcgaagaacaccattcatcgatgggtgttgaggccccatattgactat 64551 Query: 279 catgag 284 |||||| Sbjct: 64552 catgag 64557 Score = 73.8 bits (37), Expect = 4e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 96 ataatcccaccttgttacataaggtaagtattgtataatcgttcggttttccgcgatttt 155 ||||||||| | |||| ||||||| | ||||||||||| ||||| |||||| | ||||| Sbjct: 64391 ataatcccaacgtgtttcataaggcagatattgtataattgttcgattttccacaatttt 64450 Query: 156 ttccattcctctgtgtaaataccctaatatgggttcacaat 196 |||||| ||||||| ||||| || ||||| |||||||||| Sbjct: 64451 ttccatacctctgtcaaaataacccaatattggttcacaat 64491
>emb|X52614.1|CHZMR15 Maize chloroplast rps15 gene for ribosomal protein S15 Length = 493 Score = 87.7 bits (44), Expect = 3e-14 Identities = 53/56 (94%) Strand = Plus / Minus Query: 327 attcattattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 490 attctttattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 435
>emb|X56522.1|ZMTRNDHH Maize chloroplast DNA for junction between IR-B and SSC Length = 148 Score = 87.7 bits (44), Expect = 3e-14 Identities = 53/56 (94%) Strand = Plus / Minus Query: 327 attcattattccatgaaaatggattattccatgaattcctcaaagtgaggctcatc 382 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 108 attctttattccatgaaaatggattattccatgaattcctcaaaacgaggctcatc 53
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 83.8 bits (42), Expect = 4e-13 Identities = 129/158 (81%) Strand = Plus / Plus Query: 124 tattgtataatcgttcggttttccgcgattttttccattcctctgtgtaaataccctaat 183 ||||||||||| ||||| ||||| || || |||||||| || || |||||||| || ||| Sbjct: 111643 tattgtataattgttcgattttcggcaatcttttccatccccctatgtaaataacccaat 111702 Query: 184 atgggttcacaatcaataacatcctcaccatcaagagtaacgatcagtcgaagaacacca 243 | ||||| |||||| ||||| || ||||| | |||||| || |||| |||||||||| Sbjct: 111703 acaggttcgcaatcagcaacattttctccatctaaagtaacaataagtctaagaacacca 111762 Query: 244 tgcattgatgggtgttgagggcccatattgactatcat 281 ||||| ||||| || ||||| |||||| | |||||||| Sbjct: 111763 tgcatggatggatgatgaggacccatactaactatcat 111800
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 75.8 bits (38), Expect = 1e-10 Identities = 128/158 (81%) Strand = Plus / Plus Query: 112 acataaggtaagtattgtataatcgttcggttttccgcgattttttccattcctctgtgt 171 |||||||| || ||||||| ||| || || ||||| || |||||||||||| | | ||| Sbjct: 108593 acataaggcaaatattgtacaatggtacgattttcagcaattttttccattgcacgatgt 108652 Query: 172 aaataccctaatatgggttcacaatcaataacatcctcaccatcaagagtaacgatcagt 231 ||||||||||||| ||||||||||| ||||||| |||||||| | || || || | | Sbjct: 108653 aaataccctaatactggttcacaatctataacattttcaccatctaaggttacaattaat 108712 Query: 232 cgaagaacaccatgcattgatgggtgttgagggcccat 269 || | |||||| ||||||||||| || ||||| ||||| Sbjct: 108713 cgtaaaacaccgtgcattgatggatgatgaggtcccat 108750
>gb|AC116601.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0079B05, complete sequence Length = 159382 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 248 ttgatgggtgttgagggcccatattgactatcatgagatc 287 |||||||||| ||||||||||||||||||||||||||||| Sbjct: 13286 ttgatgggtggtgagggcccatattgactatcatgagatc 13325
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 248 ttgatgggtgttgagggcccatattgactatcatgagatc 287 |||||||||| ||||||||||||||||||||||||||||| Sbjct: 1214574 ttgatgggtggtgagggcccatattgactatcatgagatc 1214613
>gb|AC079179.5| Oryza sativa chromosome 10 clone OSJNBa0079B05, complete sequence Length = 145526 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 248 ttgatgggtgttgagggcccatattgactatcatgagatc 287 |||||||||| ||||||||||||||||||||||||||||| Sbjct: 98812 ttgatgggtggtgagggcccatattgactatcatgagatc 98851
>gb|AY622317.1| Piptatherum miliaceum NADH dehydrogenase subunit F (ndhF) gene, partial cds; chloroplast Length = 2115 Score = 65.9 bits (33), Expect = 9e-08 Identities = 36/37 (97%) Strand = Plus / Plus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaa 37 ||||||||| ||||||||||||||||||||||||||| Sbjct: 2079 ttatgtatccgtgtttttattcttttttctttcttaa 2115
>gb|AY622312.1| Brachypodium pinnatum NADH dehydrogenase subunit F (ndhF) gene, partial cds; chloroplast Length = 2154 Score = 65.9 bits (33), Expect = 9e-08 Identities = 36/37 (97%) Strand = Plus / Plus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaa 37 |||||||||||||||||||||||||||| |||||||| Sbjct: 2118 ttatgtatctgtgtttttattcttttttatttcttaa 2154
>gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete genome Length = 131183 Score = 61.9 bits (31), Expect = 1e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 141 gttttccgcgattttttccattcctctgtgtaaataccctaatatgggttcacaatcaat 200 |||||| || ||||||||||| || || |||||||| ||||| | || ||||||||||| Sbjct: 112145 gttttcagctattttttccatgcccctatgtaaatatcctaaaacaggatcacaatcaat 112204 Query: 201 aacatcctcaccatc 215 ||||| ||||||||| Sbjct: 112205 aacattctcaccatc 112219
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 |||||||| |||||| |||||||||||||||||||||| Sbjct: 143868 ttatgtatatgtgttcttattcttttttctttcttaag 143831
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09, complete sequence Length = 177374 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 |||||||| |||||| |||||||||||||||||||||| Sbjct: 86445 ttatgtatatgtgttcttattcttttttctttcttaag 86408
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaag 38 |||||||| |||||| |||||||||||||||||||||| Sbjct: 20830644 ttatgtatatgtgttcttattcttttttctttcttaag 20830607
>gb|AY622315.1| Melica cupanii NADH dehydrogenase subunit F (ndhF) gene, partial cds; chloroplast Length = 2148 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaa 37 ||||||||| ||||||||||||||||| ||||||||| Sbjct: 2112 ttatgtatccgtgtttttattctttttcctttcttaa 2148
>gb|AY622314.1| Glyceria grandis NADH dehydrogenase subunit F (ndhF) gene, partial cds; chloroplast Length = 2148 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 1 ttatgtatctgtgtttttattcttttttctttcttaa 37 |||||||||||| |||||||||||||| ||||||||| Sbjct: 2112 ttatgtatctgtatttttattctttttcctttcttaa 2148
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 56.0 bits (28), Expect = 9e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 154 ttttccattcctctgtgtaaataccctaatatgggttcacaatcaataacatcctcacca 213 |||||||||||||| || ||||| || | || || ||||||||||| |||| ||||||| Sbjct: 166709 ttttccattcctctatgcaaatatccaattaccggctcacaatcaatgacattctcacca 166650 Query: 214 tcaagagt 221 |||||||| Sbjct: 166649 tcaagagt 166642
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 52.0 bits (26), Expect = 0.001 Identities = 107/134 (79%) Strand = Plus / Minus Query: 139 cggttttccgcgattttttccattcctctgtgtaaataccctaatatgggttcacaatca 198 |||||||| |||||||| |||||||||| ||| | ||| || | || |||||||||||| Sbjct: 4060442 cggttttcggcgattttctccattcctcggtgcagatagccgattacaggttcacaatca 4060383 Query: 199 ataacatcctcaccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgt 258 | ||||| |||||||| | ||| || || || || ||||| || |||||||| || || Sbjct: 4060382 acgacatcttcaccatccaaagtgacaattagccgcagaaccccgtgcattgagggatgg 4060323 Query: 259 tgagggcccatatt 272 || || |||||||| Sbjct: 4060322 tgtggccccatatt 4060309
>gb|AC012670.7| Homo sapiens BAC clone RP11-514A9 from 2, complete sequence Length = 194725 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 12 tgtttttattcttttttctttcttaagtt 40 |||||||||| |||||||||||||||||| Sbjct: 22852 tgtttttatttttttttctttcttaagtt 22880
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 48.1 bits (24), Expect = 0.022 Identities = 30/32 (93%) Strand = Plus / Minus Query: 187 ggttcacaatcaataacatcctcaccatcaag 218 ||||||||||||| ||||||||| |||||||| Sbjct: 1502780 ggttcacaatcaacaacatcctctccatcaag 1502749
>emb|CT010493.12| Mouse DNA sequence from clone RP23-140P6 on chromosome 14, complete sequence Length = 223982 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Plus Query: 10 tgtgtttttattcttttttcttt 32 ||||||||||||||||||||||| Sbjct: 12558 tgtgtttttattcttttttcttt 12580
>gb|AC163999.3| Mus musculus chromosome 15, clone RP24-387E19, complete sequence Length = 163830 Score = 46.1 bits (23), Expect = 0.086 Identities = 26/27 (96%) Strand = Plus / Plus Query: 11 gtgtttttattcttttttctttcttaa 37 |||||||||||||||||| |||||||| Sbjct: 114445 gtgtttttattcttttttttttcttaa 114471
>gb|AC114301.2| Homo sapiens chromosome 5 clone RP11-143L23, complete sequence Length = 162976 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Minus Query: 14 tttttattcttttttctttctta 36 ||||||||||||||||||||||| Sbjct: 21357 tttttattcttttttctttctta 21335
>gb|AC110721.1| Homo sapiens chromosome 5 clone RP11-520E18, complete sequence Length = 164525 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttctta 36 ||||||||||||||||||||||| Sbjct: 77136 tttttattcttttttctttctta 77158
>dbj|AP007292.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT45D08, TM0313, complete sequence Length = 98441 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Minus Query: 14 tttttattcttttttctttctta 36 ||||||||||||||||||||||| Sbjct: 43081 tttttattcttttttctttctta 43059
>dbj|AP006120.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT39P22, TM0204, complete sequence Length = 98532 Score = 46.1 bits (23), Expect = 0.086 Identities = 23/23 (100%) Strand = Plus / Minus Query: 14 tttttattcttttttctttctta 36 ||||||||||||||||||||||| Sbjct: 58476 tttttattcttttttctttctta 58454
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 44.1 bits (22), Expect = 0.34 Identities = 58/70 (82%) Strand = Plus / Plus Query: 136 gttcggttttccgcgattttttccattcctctgtgtaaataccctaatatgggttcacaa 195 ||||| ||||| || |||||||||||||||| || | ||| || ||||| |||||||| Sbjct: 118508 gttcgattttcggcaattttttccattcctcgatgcagatatcccaatattagttcacaa 118567 Query: 196 tcaataacat 205 |||| ||||| Sbjct: 118568 tcaacaacat 118577
>gb|AC147090.3| Pan troglodytes BAC clone RP43-58D11 from 7, complete sequence Length = 200913 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 tctgtgtttttattcttttttc 29 |||||||||||||||||||||| Sbjct: 182395 tctgtgtttttattcttttttc 182416
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 44.1 bits (22), Expect = 0.34 Identities = 106/134 (79%) Strand = Plus / Minus Query: 139 cggttttccgcgattttttccattcctctgtgtaaataccctaatatgggttcacaatca 198 |||||||| |||||||| |||||||||| ||| | ||| || | || |||||||||||| Sbjct: 3976239 cggttttcggcgattttctccattcctcggtgcagatagccgattaccggttcacaatca 3976180 Query: 199 ataacatcctcaccatcaagagtaacgatcagtcgaagaacaccatgcattgatgggtgt 258 | ||||| || ||||| | ||| || || || || ||||| || |||||||| || || Sbjct: 3976179 acgacatcttcgccatccaaagtgacaattagccgcagaaccccgtgcattgagggatgg 3976120 Query: 259 tgagggcccatatt 272 || || |||||||| Sbjct: 3976119 tgtggccccatatt 3976106
>gb|AC121803.3| Mus musculus BAC clone RP23-441A23 from chromosome 6, complete sequence Length = 211809 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 15 ttttattcttttttctttctta 36 |||||||||||||||||||||| Sbjct: 2213 ttttattcttttttctttctta 2192
>gb|AC004541.1| Homo sapiens PAC clone RP5-1167P13 from 7, complete sequence Length = 88987 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 tctgtgtttttattcttttttc 29 |||||||||||||||||||||| Sbjct: 26592 tctgtgtttttattcttttttc 26613
>emb|AL928874.3| Human DNA sequence from clone RP11-16H4 on chromosome X Contains part of the CNK2 gene for connector enhancer of KSR2 (KIAA0902), complete sequence Length = 132199 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttctt 35 |||||||||||||||||||||| Sbjct: 63642 tttttattcttttttctttctt 63663
>emb|AL392164.10| Human DNA sequence from clone RP11-269L6 on chromosome X, complete sequence Length = 15885 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 tgtttttattcttttttctttc 33 |||||||||||||||||||||| Sbjct: 6216 tgtttttattcttttttctttc 6195
>emb|AL136172.16| Human DNA sequence from clone RP4-621N11 on chromosome 20 Contains the 5' end of the RBL1 gene for retinoblastoma-like protein 1, the 3' end of the C20orf132 gene and three CpG islands, complete sequence Length = 69413 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttctt 35 |||||||||||||||||||||| Sbjct: 55755 tttttattcttttttctttctt 55776
>emb|CR846093.9| Zebrafish DNA sequence from clone DKEY-88P16 in linkage group 25, complete sequence Length = 214328 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 339 atgaaaatggattattccatga 360 |||||||||||||||||||||| Sbjct: 11686 atgaaaatggattattccatga 11707
>gb|AC008825.6| Homo sapiens chromosome 5 clone CTD-2134P3, complete sequence Length = 155495 Score = 44.1 bits (22), Expect = 0.34 Identities = 28/30 (93%) Strand = Plus / Minus Query: 3 atgtatctgtgtttttattcttttttcttt 32 ||||| || ||||||||||||||||||||| Sbjct: 120806 atgtacctttgtttttattcttttttcttt 120777
>gb|AC011399.6| Homo sapiens chromosome 5 clone CTB-25P15, complete sequence Length = 174158 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 151 attttttccattcctctgtgtaaata 176 ||||||||||||||||| |||||||| Sbjct: 34863 attttttccattcctctctgtaaata 34838
>gb|AC008665.6| Homo sapiens chromosome 5 clone CTB-34L8, complete sequence Length = 133329 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 tttttattcttttttctttctt 35 |||||||||||||||||||||| Sbjct: 106481 tttttattcttttttctttctt 106460
>gb|AC159284.2| Mus musculus BAC clone RP23-318K10 from chromosome 6, complete sequence Length = 188553 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 15 ttttattcttttttctttctta 36 |||||||||||||||||||||| Sbjct: 11083 ttttattcttttttctttctta 11104
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 7 atctgtgtttttattctttttt 28 |||||||||||||||||||||| Sbjct: 32606 atctgtgtttttattctttttt 32627
>gb|AC009231.4| Homo sapiens BAC clone RP11-350I24 from 2, complete sequence Length = 127396 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttctttc 33 |||||||||||||||||||||| Sbjct: 71365 tgtttttattcttttttctttc 71386
>emb|BX255962.9| Zebrafish DNA sequence from clone CH211-269C21 in linkage group 25, complete sequence Length = 151830 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 339 atgaaaatggattattccatga 360 |||||||||||||||||||||| Sbjct: 83103 atgaaaatggattattccatga 83082
>emb|AL954662.13| Mouse DNA sequence from clone RP23-348L16 on chromosome 2, complete sequence Length = 132427 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 10 tgtgtttttattcttttttctttctt 35 ||||||||||||||||||| |||||| Sbjct: 50418 tgtgtttttattcttttttttttctt 50443
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 7 atctgtgtttttattctttttt 28 |||||||||||||||||||||| Sbjct: 32793 atctgtgtttttattctttttt 32814
>gb|AC161760.4| Mus musculus BAC clone RP23-428J22 from chromosome 14, complete sequence Length = 187639 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 tttttattcttttttctttctt 35 |||||||||||||||||||||| Sbjct: 139917 tttttattcttttttctttctt 139896
>emb|CT025667.9| Mouse DNA sequence from clone RP23-227F4 on chromosome 13, complete sequence Length = 206864 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 tttttattcttttttctttctt 35 |||||||||||||||||||||| Sbjct: 49198 tttttattcttttttctttctt 49177
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttctt 35 |||||||||||||||||||||| Sbjct: 563984 tttttattcttttttctttctt 564005
>emb|AL683822.8| Mouse DNA sequence from clone RP23-94I24 on chromosome X, complete sequence Length = 184898 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttctt 35 |||||||||||||||||||||| Sbjct: 175838 tttttattcttttttctttctt 175859
>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0056G13, complete sequence Length = 148011 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 46314 tgtttttattcttttttcttt 46334
>gb|AC149405.2| Phakopsora pachyrhizi clone JGIAFNA-69I11, complete sequence Length = 36797 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 7603 tgtttttattcttttttcttt 7583
>gb|AC149328.2| Phakopsora pachyrhizi clone JGIAFNA-13C16, complete sequence Length = 36270 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 26941 tgtttttattcttttttcttt 26961
>ref|XM_509022.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ21908 (LOC451855), mRNA Length = 623 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 ttttattcttttttctttctt 35 ||||||||||||||||||||| Sbjct: 576 ttttattcttttttctttctt 596
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ttttattcttttttctttctt 35 ||||||||||||||||||||| Sbjct: 117047 ttttattcttttttctttctt 117027
>gb|AC102484.7| Mus musculus chromosome 1, clone RP24-455F18, complete sequence Length = 150669 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 tatcctttcttccttaattca 331 ||||||||||||||||||||| Sbjct: 38211 tatcctttcttccttaattca 38231
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 335 ttccatgaaaatggattattccatg 359 |||||||||||||||||||| |||| Sbjct: 7857 ttccatgaaaatggattatttcatg 7881
>gb|AC161444.4| Mus musculus chromosome 1, clone RP23-446D9, complete sequence Length = 182353 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 311 tatcctttcttccttaattca 331 ||||||||||||||||||||| Sbjct: 83063 tatcctttcttccttaattca 83043
>gb|AC129919.9| Homo sapiens chromosome 17, clone RP13-1277B16, complete sequence Length = 182735 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 atcctttcttccttaattcat 332 ||||||||||||||||||||| Sbjct: 10837 atcctttcttccttaattcat 10817
>ref|NG_000018.1| Homo sapiens type I (acidic) hair keratin gene cluster (KRTHA.1@) on chromosome 17 Length = 100000 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 47519 tgtttttattcttttttcttt 47499
>gb|AC121800.2| Mus musculus BAC clone RP23-430F24 from 6, complete sequence Length = 188312 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 ttttattcttttttctttctt 35 ||||||||||||||||||||| Sbjct: 132271 ttttattcttttttctttctt 132291
>gb|AC009415.2| Homo sapiens BAC clone RP11-576H9 from 7, complete sequence Length = 180347 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 54297 tgtttttattcttttttcttt 54317
>gb|AC145061.27| Medicago truncatula clone mth2-6a18, complete sequence Length = 139522 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 tgtttttattcttttttctttctta 36 ||||||||||||||| ||||||||| Sbjct: 49349 tgtttttattcttttgtctttctta 49373
>emb|AL593854.6| Human DNA sequence from clone RP11-423B13 on chromosome 6 Contains the 5' part of a novel gene, complete sequence Length = 166869 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 60879 tgtttttattcttttttcttt 60859
>emb|AL590075.8| Human DNA sequence from clone RP11-462L13 on chromosome X, complete sequence Length = 135711 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 74757 tgtttttattcttttttcttt 74777
>emb|AL590031.6| Human DNA sequence from clone RP11-285F11 on chromosome X Contains the 5' end of the gene for a novel WD repeat domain protein, complete sequence Length = 145153 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 329 tcattattccatgaaaatgga 349 ||||||||||||||||||||| Sbjct: 83658 tcattattccatgaaaatgga 83678
>emb|AL442643.2| Human DNA sequence from clone RP11-564H19 on chromosome 13, complete sequence Length = 167477 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 48050 tgtttttattcttttttcttt 48030
>emb|AL357912.10| Human DNA sequence from clone RP11-328N1 on chromosome 1 Contains the 3' end of a novel gene and the 5' end of the DNAH14 gene for dynein (axonemal) heavy polypeptide 14, complete sequence Length = 130057 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 ttttattcttttttctttctt 35 ||||||||||||||||||||| Sbjct: 104444 ttttattcttttttctttctt 104464
>emb|AL356098.10| Human DNA sequence from clone RP11-457L23 on chromosome 13 Contains an Alport syndrome mental retardation midface hypoplasia and elliptocytosis chromosomal region gene 1 (AMMECR1) pseudogene, complete sequence Length = 186305 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 85919 tgtttttattcttttttcttt 85939
>gb|AC155227.3| Rhinolophus ferrumequinum clone VMRC7-4K1, complete sequence Length = 160979 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 tttttattcttttttctttct 34 ||||||||||||||||||||| Sbjct: 73029 tttttattcttttttctttct 73009
>emb|CR392046.9| Zebrafish DNA sequence from clone CH211-123N12 in linkage group 5, complete sequence Length = 103702 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 9 ctgtgtttttattcttttttctttc 33 ||||||||| ||||||||||||||| Sbjct: 52451 ctgtgttttcattcttttttctttc 52475
>emb|BX842687.13| Zebrafish DNA sequence from clone DKEY-97L11 in linkage group 7, complete sequence Length = 218252 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 6 tatctgtgtttttattcttttttctttct 34 ||||||| |||||||| |||||||||||| Sbjct: 188599 tatctgtatttttatttttttttctttct 188571
>gb|AC183098.3| Mus musculus BAC clone CH25-385D19 from chromosome 6, complete sequence Length = 101511 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 ttttattcttttttctttctt 35 ||||||||||||||||||||| Sbjct: 2678 ttttattcttttttctttctt 2698
>emb|BX571691.13| Zebrafish DNA sequence from clone CH211-142G20 in linkage group 7, complete sequence Length = 79440 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttct 34 ||||||||||||||||||||| Sbjct: 20345 tttttattcttttttctttct 20365
>gb|AC090071.3| Homo sapiens chromosome 5 clone CTD-2538A21, complete sequence Length = 197810 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 12 tgtttttattcttttttctttctta 36 |||||||||||||| |||||||||| Sbjct: 135341 tgtttttattctttattctttctta 135317
>gb|AC112910.3| Homo sapiens 3 BAC RP11-273F12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115927 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttct 34 ||||||||||||||||||||| Sbjct: 14543 tttttattcttttttctttct 14563
>gb|AC099730.2| Homo sapiens chromosome 11, clone RP11-48F13, complete sequence Length = 169549 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 78438 tgtttttattcttttttcttt 78418
>gb|AC110002.2| Homo sapiens chromosome 5 clone RP11-125A13, complete sequence Length = 168708 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 12 tgtttttattcttttttctttctta 36 |||||||||||||| |||||||||| Sbjct: 165219 tgtttttattctttattctttctta 165243
>gb|AC091146.8| Homo sapiens chromosome 11, clone RP11-884J20, complete sequence Length = 138053 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 36245 tgtttttattcttttttcttt 36265
>gb|AC096921.2| Homo sapiens chromosome 3 clone RP11-1024P17, complete sequence Length = 201412 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 43061 tgtttttattcttttttcttt 43041
>gb|AC113069.10| Mus musculus chromosome 15, clone RP23-269F24, complete sequence Length = 192825 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ttttattcttttttctttctt 35 ||||||||||||||||||||| Sbjct: 86482 ttttattcttttttctttctt 86462
>gb|AC154363.2| Mus musculus BAC clone RP23-154K12 from chromosome 13, complete sequence Length = 203241 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 101 cccaccttgttacataaggtaagta 125 ||||||||||||| ||||||||||| Sbjct: 147383 cccaccttgttacttaaggtaagta 147407
>gb|AC149415.2| Phakopsora pachyrhizi clone JGIAFNA-77J11, complete sequence Length = 40377 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 36774 tgtttttattcttttttcttt 36754
>emb|AL954836.13| Zebrafish DNA sequence from clone CH211-147N1 in linkage group 6, complete sequence Length = 109291 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttct 34 ||||||||||||||||||||| Sbjct: 6741 tttttattcttttttctttct 6761
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 ttattcttttttctttcttaa 37 ||||||||||||||||||||| Sbjct: 2065517 ttattcttttttctttcttaa 2065497
>gb|AC003958.2| Homo sapiens chromosome 17, clone RP5-18F17, complete sequence Length = 127833 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 47518 tgtttttattcttttttcttt 47498
>gb|AC024153.22| Homo sapiens 12 BAC RP13-359K18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178905 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 tttattcttttttctttctta 36 ||||||||||||||||||||| Sbjct: 77693 tttattcttttttctttctta 77673
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 tttttattcttttttctttct 34 ||||||||||||||||||||| Sbjct: 1405697 tttttattcttttttctttct 1405677
>gb|AC010105.12| Homo sapiens BAC clone RP11-563E24 from 2, complete sequence Length = 193320 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 13429 tgtttttattcttttttcttt 13409
>gb|AC079374.4|AC079374 Arabidopsis thaliana chromosome 1 BAC F4F7 genomic sequence, complete sequence Length = 89690 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 10 tgtgtttttattcttttttctttct 34 ||||||||| ||||||||||||||| Sbjct: 30541 tgtgttttttttcttttttctttct 30565
>gb|AC007823.38| Homo sapiens 3 BAC RP11-255C15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 127759 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 ttttattcttttttctttctt 35 ||||||||||||||||||||| Sbjct: 77275 ttttattcttttttctttctt 77295
>gb|AC004241.2| Homo sapiens 12 PAC RP3-197B17 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 136877 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ttttattcttttttctttctt 35 ||||||||||||||||||||| Sbjct: 68955 ttttattcttttttctttctt 68935
>gb|AC127496.5| Homo sapiens chromosome 17, clone CTD-2561B21, complete sequence Length = 166274 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 312 atcctttcttccttaattcat 332 ||||||||||||||||||||| Sbjct: 36103 atcctttcttccttaattcat 36123
>gb|AC124862.4| Homo sapiens BAC clone RP11-27M15 from 2, complete sequence Length = 160111 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 143002 tgtttttattcttttttcttt 142982
>gb|AC146315.3| Otolemur garnettii clone CH256-282O14, complete sequence Length = 197172 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ttttattcttttttctttctt 35 ||||||||||||||||||||| Sbjct: 117047 ttttattcttttttctttctt 117027
>dbj|AP003250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443D08 Length = 146670 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 ttattcttttttctttcttaa 37 ||||||||||||||||||||| Sbjct: 128095 ttattcttttttctttcttaa 128075
>gb|AC009430.2|AC009430 Homo sapiens, clone RP11-45O17, complete sequence Length = 156454 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 77509 tgtttttattcttttttcttt 77489
>emb|BX005290.10| Zebrafish DNA sequence from clone CH211-127M10 in linkage group 6, complete sequence Length = 186793 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttct 34 ||||||||||||||||||||| Sbjct: 136239 tttttattcttttttctttct 136259
>emb|BX119968.5| Mouse DNA sequence from clone RP23-375D12 on chromosome X, complete sequence Length = 190433 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ttttattcttttttctttctt 35 ||||||||||||||||||||| Sbjct: 45585 ttttattcttttttctttctt 45565
>gb|AC157023.6| Mus musculus 6 BAC RP24-386D10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 170298 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttct 34 ||||||||||||||||||||| Sbjct: 42956 tttttattcttttttctttct 42976
>gb|AC153827.5| Mus musculus 6 BAC RP23-58O24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 234403 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttct 34 ||||||||||||||||||||| Sbjct: 176092 tttttattcttttttctttct 176112
>emb|AL121576.5|CNS01DRW Human chromosome 14 DNA sequence BAC R-476J6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 221004 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 161753 tgtttttattcttttttcttt 161773
>dbj|AP002001.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-680E19, complete sequence Length = 149253 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 20018 tgtttttattcttttttcttt 20038
>dbj|AP001985.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-648J7, complete sequence Length = 161972 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 71797 tgtttttattcttttttcttt 71817
>dbj|AP005434.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-721O19, complete sequence Length = 163308 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 68249 tgtttttattcttttttcttt 68269
>dbj|AP000617.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-26H5, complete sequences Length = 100785 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttcttt 32 ||||||||||||||||||||| Sbjct: 60624 tgtttttattcttttttcttt 60644
>gb|AC107371.17| Mus musculus chromosome 7, clone RP24-66D2, complete sequence Length = 214373 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ttttattcttttttctttctt 35 ||||||||||||||||||||| Sbjct: 196781 ttttattcttttttctttctt 196761
>gb|AC111041.11| Mus musculus chromosome 7, clone RP24-67N23, complete sequence Length = 175930 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ttttattcttttttctttctt 35 ||||||||||||||||||||| Sbjct: 66730 ttttattcttttttctttctt 66710
>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome Length = 1796226 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gtttttattcttttttcttt 32 |||||||||||||||||||| Sbjct: 1250826 gtttttattcttttttcttt 1250845
>gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome Length = 165372 Score = 40.1 bits (20), Expect = 5.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 219 agtaacgatcagtcgaagaacaccatgcattgatgg 254 |||||| || |||| ||| ||||||||||||||||| Sbjct: 86474 agtaacaatgagtctaagcacaccatgcattgatgg 86439
>gb|AC091400.4| Pan troglodytes clone RP43-13P21, complete sequence Length = 89312 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttttattcttttttctttcttaa 37 ||||||||||||||| |||||||| Sbjct: 11425 tttttattcttttttttttcttaa 11448
>gb|AC151117.4| Bos taurus BAC CH240-85N4 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 199710 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tgtatctgtgtttttattct 23 |||||||||||||||||||| Sbjct: 152107 tgtatctgtgtttttattct 152126
>gb|AC091474.2| Mus musculus chromosome X clone RP21-643D22 complete sequence Length = 198426 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttttattcttttttctttcttaa 37 ||||| |||||||||||||||||| Sbjct: 84503 tttttcttcttttttctttcttaa 84526
>gb|AC149645.4| Bos taurus BAC CH240-50L4 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 198061 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tgtatctgtgtttttattct 23 |||||||||||||||||||| Sbjct: 122444 tgtatctgtgtttttattct 122425
>gb|AC149762.2| Bos taurus BAC CH240-123C23 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 187366 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 tatctgtgtttttattcttt 25 |||||||||||||||||||| Sbjct: 96718 tatctgtgtttttattcttt 96737
>gb|AC125113.3| Mus musculus BAC clone RP24-251K23 from chromosome 6, complete sequence Length = 127380 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 tgtttttattcttttttctttctt 35 ||||||| |||||||||||||||| Sbjct: 408 tgttttttttcttttttctttctt 385
>gb|AC159708.13| Mus musculus 10 BAC RP23-110M21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 238622 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 tgtttttattcttttttctttctt 35 |||| ||||||||||||||||||| Sbjct: 227148 tgttgttattcttttttctttctt 227125
>gb|AC005081.3| Homo sapiens BAC clone CTA-270D13 from 7, complete sequence Length = 180290 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 tttttattcttttttctttcttaa 37 ||||||||||||||| |||||||| Sbjct: 130000 tttttattcttttttttttcttaa 129977
>gb|AC113095.14| Mus musculus chromosome 9, clone RP23-311A1, complete sequence Length = 205429 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 tttttattcttttttctttcttaa 37 ||||| |||||||||||||||||| Sbjct: 61282 ttttttttcttttttctttcttaa 61259
>gb|AC100724.10| Mus musculus chromosome 17, clone RP24-120E11, complete sequence Length = 179334 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 tgtttttattcttttttctttctt 35 ||||||| |||||||||||||||| Sbjct: 152826 tgttttttttcttttttctttctt 152803
>gb|AC117447.6| Homo sapiens 3 BAC RP11-256E13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 78229 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gtttttattcttttttcttt 32 |||||||||||||||||||| Sbjct: 69279 gtttttattcttttttcttt 69298
>gb|AC124391.3| Mus musculus BAC clone RP24-439L13 from chromosome 18, complete sequence Length = 153492 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 tgtttttattcttttttctttctt 35 |||||||| ||||||||||||||| Sbjct: 127899 tgtttttaatcttttttctttctt 127876
>gb|AC122520.2| Mus musculus BAC clone RP24-470M22 from 6, complete sequence Length = 153520 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 tgtttttattcttttttctttctt 35 ||||||| |||||||||||||||| Sbjct: 15127 tgttttttttcttttttctttctt 15150
>emb|AL512587.13| Mouse DNA sequence from clone RP23-467P7 on chromosome 2, complete sequence Length = 180204 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ttttattcttttttctttct 34 |||||||||||||||||||| Sbjct: 111860 ttttattcttttttctttct 111841
>ref|XM_862678.1| PREDICTED: Canis familiaris similar to casein kinase 1, alpha 1 isoform 1, transcript variant 15 (LOC479331), mRNA Length = 4369 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttttattcttttttctttcttaa 37 ||||| |||||||||||||||||| Sbjct: 3018 ttttttttcttttttctttcttaa 3041
>ref|XM_848577.1| PREDICTED: Canis familiaris similar to casein kinase 1, alpha 1 isoform 1, transcript variant 2 (LOC479331), mRNA Length = 4491 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttttattcttttttctttcttaa 37 ||||| |||||||||||||||||| Sbjct: 3140 ttttttttcttttttctttcttaa 3163
>ref|XM_862662.1| PREDICTED: Canis familiaris similar to casein kinase 1, alpha 1 isoform 1, transcript variant 14 (LOC479331), mRNA Length = 3934 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttttattcttttttctttcttaa 37 ||||| |||||||||||||||||| Sbjct: 2583 ttttttttcttttttctttcttaa 2606
>ref|XM_862652.1| PREDICTED: Canis familiaris similar to casein kinase 1, alpha 1 isoform 1, transcript variant 13 (LOC479331), mRNA Length = 4061 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttttattcttttttctttcttaa 37 ||||| |||||||||||||||||| Sbjct: 2710 ttttttttcttttttctttcttaa 2733
>ref|XM_862643.1| PREDICTED: Canis familiaris similar to casein kinase 1, alpha 1 isoform 1, transcript variant 12 (LOC479331), mRNA Length = 4061 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttttattcttttttctttcttaa 37 ||||| |||||||||||||||||| Sbjct: 2710 ttttttttcttttttctttcttaa 2733
>ref|XM_862631.1| PREDICTED: Canis familiaris similar to casein kinase 1, alpha 1 isoform 1, transcript variant 11 (LOC479331), mRNA Length = 4061 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttttattcttttttctttcttaa 37 ||||| |||||||||||||||||| Sbjct: 2710 ttttttttcttttttctttcttaa 2733
>ref|XM_862622.1| PREDICTED: Canis familiaris similar to casein kinase 1, alpha 1 isoform 1, transcript variant 10 (LOC479331), mRNA Length = 4055 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttttattcttttttctttcttaa 37 ||||| |||||||||||||||||| Sbjct: 2704 ttttttttcttttttctttcttaa 2727
>ref|XM_862612.1| PREDICTED: Canis familiaris similar to casein kinase 1, alpha 1 isoform 1, transcript variant 9 (LOC479331), mRNA Length = 4061 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttttattcttttttctttcttaa 37 ||||| |||||||||||||||||| Sbjct: 2710 ttttttttcttttttctttcttaa 2733
>ref|XM_862602.1| PREDICTED: Canis familiaris similar to casein kinase 1, alpha 1 isoform 1, transcript variant 8 (LOC479331), mRNA Length = 4061 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttttattcttttttctttcttaa 37 ||||| |||||||||||||||||| Sbjct: 2710 ttttttttcttttttctttcttaa 2733
>ref|XM_862593.1| PREDICTED: Canis familiaris similar to casein kinase 1, alpha 1 isoform 1, transcript variant 7 (LOC479331), mRNA Length = 4033 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttttattcttttttctttcttaa 37 ||||| |||||||||||||||||| Sbjct: 2682 ttttttttcttttttctttcttaa 2705
>ref|XM_862583.1| PREDICTED: Canis familiaris similar to casein kinase 1, alpha 1 isoform 1, transcript variant 6 (LOC479331), mRNA Length = 3898 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttttattcttttttctttcttaa 37 ||||| |||||||||||||||||| Sbjct: 2547 ttttttttcttttttctttcttaa 2570
>ref|XM_536470.2| PREDICTED: Canis familiaris similar to casein kinase 1, alpha 1 isoform 1, transcript variant 1 (LOC479331), mRNA Length = 4407 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttttattcttttttctttcttaa 37 ||||| |||||||||||||||||| Sbjct: 3056 ttttttttcttttttctttcttaa 3079
>gb|AC005062.1| Homo sapiens BAC clone CTB-95A14 from 7, complete sequence Length = 119927 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gtttttattcttttttcttt 32 |||||||||||||||||||| Sbjct: 53765 gtttttattcttttttcttt 53746
>gb|AC117598.7| Mus musculus chromosome 1, clone RP23-398H16, complete sequence Length = 196300 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tttattcttttttctttctt 35 |||||||||||||||||||| Sbjct: 85359 tttattcttttttctttctt 85340
>emb|CR318653.8| Zebrafish DNA sequence from clone DKEY-19B23 in linkage group 7, complete sequence Length = 235090 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 tgtttttattcttttttctttctt 35 |||||||||| ||||||||||||| Sbjct: 180682 tgtttttatttttttttctttctt 180659
>gb|AC182019.3| Felis catus clone RP86-75P21, complete sequence Length = 58123 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 tttttattcttttttctttc 33 |||||||||||||||||||| Sbjct: 15635 tttttattcttttttctttc 15616
>emb|BX682235.2| Human DNA sequence from clone WI2-83379A6 on chromosome X, complete sequence Length = 40361 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttctt 31 |||||||||||||||||||| Sbjct: 3866 tgtttttattcttttttctt 3885
>emb|AL591602.7| Human DNA sequence from clone RP5-1092E23 on chromosome 1 Contains part of the gene for a novel protein and a zinc finger protein pseudogene, complete sequence Length = 149988 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gtttttattcttttttcttt 32 |||||||||||||||||||| Sbjct: 103097 gtttttattcttttttcttt 103078
>emb|AL590101.9| Human DNA sequence from clone RP11-318L16 on chromosome 1 Contains the 3' end of a novel gene (FLJ10876), the TRAF5 gene for TNF receptor-associated factor 5, a novel gene (MGC14801), a sorting nexin 25 (SNX25) pseudogene and a actin related protein 2/3 complex, subunit 3 21kDa (ARPC3) pseudogene, complete sequence Length = 180169 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttc 33 |||||||||||||||||||| Sbjct: 99238 tttttattcttttttctttc 99257
>emb|AL445672.15| Human DNA sequence from clone RP11-66D1 on chromosome 9, complete sequence Length = 113031 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tgtttttattcttttttctt 31 |||||||||||||||||||| Sbjct: 101873 tgtttttattcttttttctt 101854
>emb|AL356499.16| Human DNA sequence from clone RP1-315J21 on chromosome X Contains the 3' end of a novel gene, complete sequence Length = 142557 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gtttttattcttttttcttt 32 |||||||||||||||||||| Sbjct: 93969 gtttttattcttttttcttt 93950
>emb|AL355595.10| Human DNA sequence from clone RP11-276G3 on chromosome 13 Contains a novel gene and a novel pseudogene, complete sequence Length = 119343 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttc 33 |||||||||||||||||||| Sbjct: 13784 tttttattcttttttctttc 13803
>emb|AL354956.13| Human DNA sequence from clone RP5-1113E3 on chromosome 1p36.21-36.33 Contains the 3' end of the CORT gene for cortistatin, a novel gene, the DFFA gene for DNA fragmentation factor 45kDa alpha polypeptide and the 5' end of the PEX14 gene for peroxisomal biogenesis factor 14, complete sequence Length = 58039 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 attcttttttctttcttaag 38 |||||||||||||||||||| Sbjct: 36810 attcttttttctttcttaag 36829
>emb|AL136126.34| Human DNA sequence from clone RP1-89D4 on chromosome 11p12-14.1, complete sequence Length = 78947 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tttattcttttttctttctt 35 |||||||||||||||||||| Sbjct: 4349 tttattcttttttctttctt 4330
>emb|AL136525.17| Human DNA sequence from clone RP11-147H23 on chromosome 13 Contains the 3' end of gene for a novel protein similar to phosphoinositide-binding protein and the 3' end of a novel gene for a novel protein similar to oxidoreductase, complete sequence Length = 145340 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tttattcttttttctttctt 35 |||||||||||||||||||| Sbjct: 31917 tttattcttttttctttctt 31936
>emb|AL121996.15|HSG118G19 Human DNA sequence from clone GS1-118G19 on chromosome 1q25.1-31.1 Contains the 5' end of the gene for hemicentin, complete sequence Length = 87461 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 tatcctttcttccttaattcatta 334 |||||||||||||||| ||||||| Sbjct: 34212 tatcctttcttccttacttcatta 34235
>emb|AL109659.20|HSJ1024N4 Human DNA sequence from clone RP5-1024N4 on chromosome 1p32.1-33 Contains two novel genes, a novel pseudogene, a novel gene (LOC200010), a novel gene similar to connexin and one CpG island, complete sequence Length = 181678 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gtttttattcttttttcttt 32 |||||||||||||||||||| Sbjct: 166174 gtttttattcttttttcttt 166193
>emb|AL049177.5|HS552K20 Human DNA sequence from clone RP4-552K20 on chromosome Xq26.3-27.2 Contains the 5' end of the MAGEC3 gene for MAGE family testis and tumor-specific protein-like, complete sequence Length = 51918 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttc 33 |||||||||||||||||||| Sbjct: 10110 tttttattcttttttctttc 10129
>emb|AL049544.4|HSDJ240B8 Human DNA sequence from clone RP1-240B8 on chromosome 6 Contains the 3' end of the KHDRBS2 gene for KH domain containing RNA binding signal transduction associated protein 2 and a novel gene, complete sequence Length = 103610 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 tgtttttattcttttttctttctt 35 ||||||| |||||||||||||||| Sbjct: 12725 tgttttttttcttttttctttctt 12702
>emb|AL024497.5|HS283K11 Human DNA sequence from clone RP1-283K11 on chromosome 6q23.1-24.3 Contains part of the EYA4 gene for eyes absent homolog 4 (Drosophila) (Deafness, autosomal nonsyndromic sensorineural, 10 (DFNA10)), the 3' end of a novel gene and two novel genes, complete sequence Length = 140682 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gtttttattcttttttcttt 32 |||||||||||||||||||| Sbjct: 13372 gtttttattcttttttcttt 13391
>gb|AC127142.3| Rattus norvegicus 4 BAC CH230-41K13 (Children's Hospital Oakland Research Institute) complete sequence Length = 238669 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tatgtatctgtgtttttatt 21 |||||||||||||||||||| Sbjct: 197630 tatgtatctgtgtttttatt 197649
>emb|BX323824.17| Zebrafish DNA sequence from clone DKEY-37F18 in linkage group 25, complete sequence Length = 168743 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 cttttttctttcttaagtta 41 |||||||||||||||||||| Sbjct: 45375 cttttttctttcttaagtta 45394
>gb|AC027820.12| Homo sapiens chromosome 17, clone RP11-198F11, complete sequence Length = 154353 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 ctgtgtttttattcttttttcttt 32 |||||||||| ||||||||||||| Sbjct: 17433 ctgtgttttttttcttttttcttt 17410
>gb|AC162804.2| Mus musculus BAC clone RP23-192H11 from chromosome 18, complete sequence Length = 183966 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 tgtttttattcttttttctttctt 35 |||||||| ||||||||||||||| Sbjct: 170677 tgtttttaatcttttttctttctt 170700
>emb|BX908767.8| Zebrafish DNA sequence from clone DKEY-66B12 in linkage group 3, complete sequence Length = 177868 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 tctgtgtttttattcttttt 27 |||||||||||||||||||| Sbjct: 46284 tctgtgtttttattcttttt 46265
>gb|AC165066.2| Phakopsora pachyrhizi clone JGIAFNA-401O2, complete sequence Length = 39855 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 tttttattcttttttctttcttaa 37 ||||||||||||||||||| |||| Sbjct: 20455 tttttattcttttttctttgttaa 20432
>gb|AC093010.7| Homo sapiens 3 BAC RP11-553L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161077 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttc 33 |||||||||||||||||||| Sbjct: 100804 tttttattcttttttctttc 100823
>emb|BX470191.8| Zebrafish DNA sequence from clone CH211-89N7 in linkage group 7, complete sequence Length = 181294 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 151 attttttccattcctctgtgtaaa 174 |||||||||||| ||||||||||| Sbjct: 149125 attttttccattgctctgtgtaaa 149102
>gb|AC106881.9| Homo sapiens BAC clone RP11-710C12 from 4, complete sequence Length = 150889 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttctt 31 |||||||||||||||||||| Sbjct: 115857 tgtttttattcttttttctt 115876
>emb|BX248240.14| Zebrafish DNA sequence from clone CH211-162I19 in linkage group 4 Contains the gene for a novel protein similar to vertebrate ceramide kinase (CERK), the gene for a novel protein similar to mouse cDNA sequence BC021523 (BC021523) and a CpG island, complete sequence Length = 153756 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tgtttttattcttttttctt 31 |||||||||||||||||||| Sbjct: 5044 tgtttttattcttttttctt 5063
>gb|AC023421.7| Homo sapiens chromosome 18, clone RP11-116O18, complete sequence Length = 163365 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gtttttattcttttttcttt 32 |||||||||||||||||||| Sbjct: 33310 gtttttattcttttttcttt 33291
>gb|AC069064.18| Homo sapiens 3 BAC RP11-436P4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 64139 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tttttattcttttttctttc 33 |||||||||||||||||||| Sbjct: 61607 tttttattcttttttctttc 61626
>emb|AL732438.17| Mouse DNA sequence from clone RP23-317K5 on chromosome X, complete sequence Length = 157834 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tttattcttttttctttctt 35 |||||||||||||||||||| Sbjct: 91154 tttattcttttttctttctt 91135
>gb|AC011475.6| Homo sapiens chromosome 19 clone CTC-539A10, complete sequence Length = 179953 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tttattcttttttctttctt 35 |||||||||||||||||||| Sbjct: 127069 tttattcttttttctttctt 127050
>emb|BX296538.9| Zebrafish DNA sequence from clone DKEY-275P19 in linkage group 25, complete sequence Length = 192787 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 tgtttttattcttttttctttctt 35 ||||||| |||||||||||||||| Sbjct: 72233 tgtttttgttcttttttctttctt 72256
>gb|AC115620.3| Homo sapiens BAC clone RP11-305K4 from 4, complete sequence Length = 129984 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tttattcttttttctttctt 35 |||||||||||||||||||| Sbjct: 121737 tttattcttttttctttctt 121756
>gb|AC016822.9| Homo sapiens chromosome 10 clone RP11-430K23, complete sequence Length = 172367 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 tttttattcttttttctttcttaa 37 ||||| |||||||||||||||||| Sbjct: 5490 ttttttttcttttttctttcttaa 5513
>gb|AC073917.19| Homo sapiens 12q BAC RP11-415D21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163836 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ttatgtatctgtgtttttat 20 |||||||||||||||||||| Sbjct: 132288 ttatgtatctgtgtttttat 132307
>gb|AC092668.2| Homo sapiens BAC clone RP11-553F8 from 4, complete sequence Length = 167570 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gtttttattcttttttcttt 32 |||||||||||||||||||| Sbjct: 110672 gtttttattcttttttcttt 110653
>gb|AF483622.1| Homo sapiens replication factor C (activator 1) 2 (40kD) (RFC2) gene, complete cds Length = 23628 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 tttttattcttttttctttcttaa 37 ||||||||||||||| |||||||| Sbjct: 11336 tttttattcttttttttttcttaa 11313
>gb|AC106807.2| Homo sapiens chromosome 5 clone RP11-513C4, complete sequence Length = 176040 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ttttattcttttttctttct 34 |||||||||||||||||||| Sbjct: 242 ttttattcttttttctttct 261
>dbj|AK143944.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:F530003O13 product:unclassifiable, full insert sequence Length = 996 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tttattcttttttctttctt 35 |||||||||||||||||||| Sbjct: 29 tttattcttttttctttctt 10
>gb|AC093926.6| Genomic sequence for Mus musculus, clone RP23-342N3, complete sequence Length = 210913 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 13 gtttttattcttttttctttcttaagtt 40 ||||||| |||||||||||| ||||||| Sbjct: 201625 gtttttactcttttttcttttttaagtt 201652
>gb|AC171368.3| Cavia porcellus clone CH234-176E17, complete sequence Length = 179405 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gtttttattcttttttcttt 32 |||||||||||||||||||| Sbjct: 161270 gtttttattcttttttcttt 161251
>gb|AC051638.24| Mus musculus chromosome 6, clone RP23-177J17, complete sequence Length = 231841 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 tatgtatctgtgtttttattcttt 25 ||||||||||||| |||||||||| Sbjct: 54919 tatgtatctgtgtgtttattcttt 54942
>emb|BX324003.7| Zebrafish DNA sequence from clone DKEY-81I14 in linkage group 17, complete sequence Length = 247607 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 acataaggtaagtattgtat 131 |||||||||||||||||||| Sbjct: 125975 acataaggtaagtattgtat 125994 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,216,888 Number of Sequences: 3902068 Number of extensions: 5216888 Number of successful extensions: 179406 Number of sequences better than 10.0: 294 Number of HSP's better than 10.0 without gapping: 301 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 177471 Number of HSP's gapped (non-prelim): 1909 length of query: 398 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 376 effective length of database: 17,147,199,772 effective search space: 6447347114272 effective search space used: 6447347114272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
